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SKM

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
O12C8sing1.43Å1.43Å
O12H12sing0.97Å0.95Å
C8C6sing1.53Å1.54Å
C8C9sing1.53Å1.54Å
C8H8sing1.09Å1.11Å
C6O7sing1.43Å1.43Å
C6C5sing1.53Å1.54Å
C6H6sing1.09Å1.11Å
O7HO7sing0.97Å0.95Å
C5C4sing1.50Å1.54Å
C5H51sing1.09Å1.12Å
C5H52sing1.09Å1.12Å
C4C1sing1.47Å1.54Å
C4C10doub1.32Å1.35Å
C1O2sing1.35Å1.29Å
C1O3doub1.22Å1.29Å
O2HO2sing0.97Å0.95Å
C10C9sing1.50Å1.54Å
C10H10sing1.08Å1.10Å
C9O11sing1.43Å1.43Å
C9H9sing1.09Å1.12Å
O11H11sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C8O12H12108.9°106.8°
O12C8C6108.9°110.0°
O12C8C9109.9°109.6°
O12C8H8109.7°109.7°
C6C8C9109.9°108.5°
C6C8H8109.7°109.3°
C8C6O7110.0°109.6°
C8C6C5109.3°108.7°
C8C6H6109.5°109.7°
C9C8H8108.7°109.6°
C8C9C10111.3°110.3°
C8C9O11109.9°109.1°
C8C9H9108.0°109.4°
O7C6C5110.4°109.6°
O7C6H6108.4°109.6°
C6O7HO7110.0°106.8°
C5C6H6109.1°109.6°
C6C5C4112.7°110.1°
C6C5H51111.0°109.4°
C6C5H52111.0°109.4°
C4C5H51111.0°109.4°
C4C5H52111.1°109.4°
C5C4C1119.1°118.1°
C5C4C10122.2°123.8°
H51C5H5299.3°109.3°
C1C4C10118.6°118.1°
C4C1O2120.0°120.0°
C4C1O3120.5°120.0°
C4C10C9123.1°123.8°
C4C10H10111.3°118.1°
O2C1O3119.5°120.0°
C1O2HO2120.0°120.0°
C9C10H10125.6°118.1°
C10C9O11109.7°109.4°
C10C9H9108.2°109.4°
O11C9H9109.6°109.3°
C9O11H11109.9°106.8°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O12C8C6C9120.4°119.9°
O12C8C6H8120.1°120.5°
O12C8C9H8120.1°120.5°
O12C8C6O7177.2°52.5°
O12C8C6C555.7°172.3°
O12C8C6H663.8°67.9°
O12C8C9C1070.8°169.7°
O12C8C9O1151.0°49.5°
O12C8C9H9170.6°70.0°
H12O12C8C6180.0°179.3°
H12O12C8C959.6°60.1°
H12O12C8H859.9°60.4°
C6C8C9H8120.1°119.4°
C8C6O7C5120.7°119.2°
C8C6O7H6119.8°120.4°
C8C6C5H6119.8°119.8°
C8C6O7HO7180.0°179.6°
C8C6C5C446.3°49.7°
C8C6C5H5179.0°70.5°
C8C6C5H52171.6°169.9°
C6C8C9C1049.0°49.5°
C6C8C9O11170.8°70.7°
C6C8C9H969.6°169.8°
C9C8C6O756.7°172.4°
C9C8C6C564.7°67.8°
C9C8C6H6175.8°52.0°
C8C9C10C417.3°17.1°
C8C9C10O11121.9°120.0°
C8C9C10H9118.5°120.3°
C8C9C10H10162.7°162.9°
C8C9O11H9118.5°119.5°
C8C9O11H11180.0°179.3°
H8C8C6O762.8°68.0°
H8C8C6C5175.8°51.8°
H8C8C6H656.3°171.6°
H8C8C9C10169.1°69.9°
H8C8C9O1169.1°170.0°
H8C8C9H950.4°50.4°
O7C6C5H6119.1°120.4°
O7C6C5C474.8°169.5°
O7C6C5H51159.9°49.3°
O7C6C5H5250.5°70.3°
C5C6O7HO759.3°60.4°
C6C5C4H51125.3°120.2°
C6C5C4H52125.3°120.2°
C6C5H51H52116.9°119.7°
C6C5C4C1168.7°162.8°
C6C5C4C1014.8°17.2°
H6C6O7HO760.2°59.9°
H6C6C5C4166.1°70.2°
H6C6C5H5140.8°169.6°
H6C6C5H5268.6°50.0°
C4C5H51H52116.9°119.7°
C5C4C1C10176.6°180.0°
C5C4C1O213.1°0.0°
C5C4C1O3168.7°180.0°
C5C4C10C90.2°0.5°
C5C4C10H10179.8°179.6°
H51C5C4C166.1°77.0°
H51C5C4C10110.4°103.0°
H52C5C4C143.4°42.6°
H52C5C4C10140.1°137.4°
C4C1O2O3178.3°179.9°
C4C1O2HO2180.0°179.9°
C1C4C10C9176.4°179.5°
C1C4C10H103.7°0.4°
C10C4C1O2163.6°180.0°
C10C4C1O314.7°0.0°
C4C10C9H10180.0°180.0°
C4C10C9O11139.2°102.9°
C4C10C9H9101.2°137.4°
O3C1O2HO21.7°0.0°
C10C9O11H9118.7°119.7°
C10C9O11H1157.2°60.0°
H10C10C9O1140.8°77.1°
H10C10C9H978.8°42.6°
H9C9O11H1161.5°59.7°

218853

PDB entries from 2024-04-24

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