SIO
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| CA4 | OA4 | doub | 1.21Å | 1.22Å | |
| O4 | CA4 | sing | 1.34Å | 1.45Å | |
| CA4 | CM4 | sing | 1.51Å | 1.49Å | |
| CM4 | HM4 | sing | 1.09Å | 1.10Å | |
| CM4 | HM4A | sing | 1.09Å | 1.10Å | |
| CM4 | HM4B | sing | 1.09Å | 1.10Å | |
| C4 | O4 | sing | 1.45Å | 1.43Å | |
| C5 | C4 | sing | 1.53Å | 1.53Å | |
| C3 | C4 | sing | 1.53Å | 1.53Å | |
| C4 | H4 | sing | 1.09Å | 1.10Å | |
| C6 | C5 | sing | 1.53Å | 1.53Å | |
| C5 | N5 | sing | 1.46Å | 1.46Å | |
| C5 | H5 | sing | 1.09Å | 1.10Å | |
| N5 | C10 | sing | 1.35Å | 1.33Å | |
| N5 | HN5 | sing | 0.97Å | 1.00Å | |
| O10 | C10 | doub | 1.21Å | 1.22Å | |
| C10 | C11 | sing | 1.51Å | 1.51Å | |
| C11 | H111 | sing | 1.09Å | 1.10Å | |
| C11 | H113 | sing | 1.09Å | 1.10Å | |
| C11 | H112 | sing | 1.09Å | 1.10Å | |
| C2 | C3 | sing | 1.53Å | 1.53Å | |
| C3 | H32 | sing | 1.09Å | 1.10Å | |
| C3 | H31 | sing | 1.09Å | 1.10Å | |
| O2 | C2 | sing | 1.43Å | 1.43Å | |
| O6 | C2 | sing | 1.43Å | 1.43Å | |
| C2 | C1 | sing | 1.51Å | 1.52Å | |
| CM2 | O2 | sing | 1.43Å | 1.41Å | |
| CM2 | HM2 | sing | 1.09Å | 1.10Å | |
| CM2 | HM2A | sing | 1.09Å | 1.10Å | |
| CM2 | HM2B | sing | 1.09Å | 1.10Å | |
| O1A | C1 | doub | 1.21Å | 1.26Å | |
| C1 | O1B | sing | 1.34Å | 1.25Å | |
| O1B | HO1B | sing | 0.97Å | 0.95Å | |
| O6 | C6 | sing | 1.43Å | 1.43Å | |
| C7 | C6 | sing | 1.53Å | 1.51Å | |
| C6 | H6 | sing | 1.09Å | 1.10Å | |
| O7 | C7 | sing | 1.43Å | 1.42Å | |
| C8 | C7 | sing | 1.53Å | 1.52Å | |
| C7 | H7 | sing | 1.09Å | 1.10Å | |
| O7 | HO7 | sing | 0.97Å | 0.95Å | |
| C9 | C8 | sing | 1.53Å | 1.52Å | |
| C8 | O8 | sing | 1.43Å | 1.43Å | |
| C8 | H8 | sing | 1.09Å | 1.10Å | |
| O8 | HO8 | sing | 0.97Å | 0.95Å | |
| C9 | O9 | sing | 1.45Å | 1.43Å | |
| C9 | H92 | sing | 1.09Å | 1.10Å | |
| C9 | H91 | sing | 1.09Å | 1.10Å | |
| CA9 | O9 | sing | 1.34Å | 1.45Å | |
| OA9 | CA9 | doub | 1.21Å | 1.23Å | |
| CA9 | CM9 | sing | 1.51Å | 1.51Å | |
| CM9 | HM9 | sing | 1.09Å | 1.10Å | |
| CM9 | HM9A | sing | 1.09Å | 1.10Å | |
| CM9 | HM9B | sing | 1.09Å | 1.10Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| OA4 | CA4 | O4 | 117.7° | 120.0° |
| OA4 | CA4 | CM4 | 122.6° | 120.0° |
| O4 | CA4 | CM4 | 119.7° | 120.0° |
| CA4 | O4 | C4 | 114.8° | 117.0° |
| CA4 | CM4 | HM4 | 109.5° | 109.4° |
| CA4 | CM4 | HM4A | 109.5° | 109.5° |
| CA4 | CM4 | HM4B | 109.5° | 109.5° |
| HM4 | CM4 | HM4A | 109.4° | 109.5° |
| HM4 | CM4 | HM4B | 109.5° | 109.5° |
| HM4A | CM4 | HM4B | 109.5° | 109.5° |
| O4 | C4 | C5 | 110.2° | 109.6° |
| O4 | C4 | C3 | 107.4° | 109.5° |
| O4 | C4 | H4 | 111.4° | 109.5° |
| C5 | C4 | C3 | 112.3° | 109.1° |
| C5 | C4 | H4 | 106.4° | 109.6° |
| C4 | C5 | C6 | 110.9° | 109.2° |
| C4 | C5 | N5 | 104.3° | 109.5° |
| C4 | C5 | H5 | 111.6° | 109.5° |
| C3 | C4 | H4 | 109.2° | 109.5° |
| C4 | C3 | C2 | 114.5° | 109.1° |
| C4 | C3 | H32 | 107.8° | 109.5° |
| C4 | C3 | H31 | 107.8° | 109.5° |
| C6 | C5 | N5 | 108.3° | 109.5° |
| C6 | C5 | H5 | 107.8° | 109.5° |
| C5 | C6 | O6 | 110.3° | 109.4° |
| C5 | C6 | C7 | 114.1° | 109.5° |
| C5 | C6 | H6 | 104.4° | 109.5° |
| N5 | C5 | H5 | 114.0° | 109.6° |
| C5 | N5 | C10 | 120.0° | 120.0° |
| C5 | N5 | HN5 | 120.0° | 120.1° |
| C10 | N5 | HN5 | 120.0° | 120.0° |
| N5 | C10 | O10 | 121.6° | 120.0° |
| N5 | C10 | C11 | 116.3° | 120.0° |
| O10 | C10 | C11 | 122.1° | 120.0° |
| C10 | C11 | H111 | 109.5° | 109.5° |
| C10 | C11 | H113 | 109.5° | 109.5° |
| C10 | C11 | H112 | 109.5° | 109.5° |
| H111 | C11 | H113 | 109.4° | 109.4° |
| H111 | C11 | H112 | 109.5° | 109.4° |
| H113 | C11 | H112 | 109.5° | 109.5° |
| C2 | C3 | H32 | 107.8° | 109.5° |
| C2 | C3 | H31 | 107.8° | 109.6° |
| C3 | C2 | O2 | 108.5° | 109.5° |
| C3 | C2 | O6 | 109.6° | 109.4° |
| C3 | C2 | C1 | 109.9° | 109.5° |
| H32 | C3 | H31 | 111.1° | 109.5° |
| O2 | C2 | O6 | 108.1° | 109.4° |
| O2 | C2 | C1 | 109.6° | 109.5° |
| C2 | O2 | CM2 | 110.6° | 114.0° |
| O6 | C2 | C1 | 111.2° | 109.5° |
| C2 | O6 | C6 | 115.0° | 114.1° |
| C2 | C1 | O1A | 119.5° | 120.0° |
| C2 | C1 | O1B | 118.1° | 120.0° |
| O2 | CM2 | HM2 | 109.5° | 109.5° |
| O2 | CM2 | HM2A | 109.5° | 109.5° |
| O2 | CM2 | HM2B | 109.5° | 109.5° |
| HM2 | CM2 | HM2A | 109.4° | 109.5° |
| HM2 | CM2 | HM2B | 109.4° | 109.5° |
| HM2A | CM2 | HM2B | 109.5° | 109.5° |
| O1A | C1 | O1B | 122.4° | 120.0° |
| C1 | O1B | HO1B | 109.5° | 117.0° |
| O6 | C6 | C7 | 104.8° | 109.5° |
| O6 | C6 | H6 | 113.7° | 109.4° |
| C7 | C6 | H6 | 109.8° | 109.5° |
| C6 | C7 | O7 | 109.5° | 109.5° |
| C6 | C7 | C8 | 109.7° | 109.5° |
| C6 | C7 | H7 | 109.3° | 109.5° |
| O7 | C7 | C8 | 109.2° | 109.5° |
| O7 | C7 | H7 | 109.7° | 109.5° |
| C7 | O7 | HO7 | 109.5° | 114.0° |
| C8 | C7 | H7 | 109.5° | 109.4° |
| C7 | C8 | C9 | 111.1° | 109.5° |
| C7 | C8 | O8 | 107.4° | 109.5° |
| C7 | C8 | H8 | 109.9° | 109.4° |
| C9 | C8 | O8 | 109.8° | 109.5° |
| C9 | C8 | H8 | 107.5° | 109.5° |
| C8 | C9 | O9 | 107.2° | 109.5° |
| C8 | C9 | H92 | 110.2° | 109.5° |
| C8 | C9 | H91 | 110.2° | 109.4° |
| O8 | C8 | H8 | 111.2° | 109.4° |
| C8 | O8 | HO8 | 109.5° | 114.0° |
| O9 | C9 | H92 | 110.2° | 109.5° |
| O9 | C9 | H91 | 110.3° | 109.4° |
| C9 | O9 | CA9 | 120.0° | 117.0° |
| H92 | C9 | H91 | 108.7° | 109.5° |
| O9 | CA9 | OA9 | 117.5° | 120.0° |
| O9 | CA9 | CM9 | 117.9° | 120.0° |
| OA9 | CA9 | CM9 | 124.6° | 120.0° |
| CA9 | CM9 | HM9 | 109.5° | 109.5° |
| CA9 | CM9 | HM9A | 109.4° | 109.5° |
| CA9 | CM9 | HM9B | 109.5° | 109.5° |
| HM9 | CM9 | HM9A | 109.5° | 109.5° |
| HM9 | CM9 | HM9B | 109.4° | 109.4° |
| HM9A | CM9 | HM9B | 109.5° | 109.5° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| OA4 | CA4 | O4 | CM4 | 179.8° | 179.8° |
| OA4 | CA4 | CM4 | HM4 | 0.0° | 90.0° |
| OA4 | CA4 | CM4 | HM4A | 120.0° | 150.0° |
| OA4 | CA4 | CM4 | HM4B | 120.0° | 30.0° |
| OA4 | CA4 | O4 | C4 | 179.9° | 0.1° |
| O4 | CA4 | CM4 | HM4 | 179.8° | 89.8° |
| O4 | CA4 | CM4 | HM4A | 60.2° | 30.2° |
| O4 | CA4 | CM4 | HM4B | 59.8° | 150.3° |
| CA4 | O4 | C4 | C5 | 110.6° | 150.2° |
| CA4 | O4 | C4 | C3 | 126.8° | 90.2° |
| CA4 | O4 | C4 | H4 | 7.2° | 29.9° |
| CA4 | CM4 | HM4 | HM4A | 120.0° | 120.0° |
| CA4 | CM4 | HM4 | HM4B | 120.0° | 120.0° |
| CA4 | CM4 | HM4A | HM4B | 120.0° | 120.0° |
| CM4 | CA4 | O4 | C4 | 0.0° | 179.7° |
| HM4 | CM4 | HM4A | HM4B | 120.0° | 120.0° |
| O4 | C4 | C5 | C3 | 119.6° | 119.9° |
| O4 | C4 | C5 | H4 | 120.9° | 120.2° |
| O4 | C4 | C3 | H4 | 121.0° | 120.1° |
| O4 | C4 | C5 | C6 | 165.5° | 176.8° |
| O4 | C4 | C5 | N5 | 78.1° | 63.3° |
| O4 | C4 | C5 | H5 | 45.4° | 56.9° |
| O4 | C4 | C3 | C2 | 165.1° | 176.9° |
| O4 | C4 | C3 | H32 | 74.9° | 63.2° |
| O4 | C4 | C3 | H31 | 45.1° | 56.9° |
| C5 | C4 | C3 | H4 | 117.8° | 119.9° |
| C4 | C5 | C6 | N5 | 113.9° | 119.9° |
| C4 | C5 | C6 | H5 | 122.4° | 119.9° |
| C4 | C5 | N5 | H5 | 121.9° | 120.2° |
| C4 | C5 | N5 | C10 | 98.7° | 85.1° |
| C4 | C5 | N5 | HN5 | 81.3° | 95.0° |
| C5 | C4 | C3 | C2 | 43.9° | 56.9° |
| C5 | C4 | C3 | H32 | 163.9° | 176.9° |
| C5 | C4 | C3 | H31 | 76.1° | 63.0° |
| C4 | C5 | C6 | O6 | 54.4° | 57.5° |
| C4 | C5 | C6 | C7 | 172.0° | 177.5° |
| C4 | C5 | C6 | H6 | 68.1° | 62.4° |
| C3 | C4 | C5 | C6 | 45.9° | 56.9° |
| C3 | C4 | C5 | N5 | 162.3° | 176.8° |
| C3 | C4 | C5 | H5 | 74.2° | 63.0° |
| C4 | C3 | C2 | H32 | 120.0° | 119.9° |
| C4 | C3 | C2 | H31 | 120.0° | 119.9° |
| C4 | C3 | H32 | H31 | 118.0° | 120.1° |
| C4 | C3 | C2 | O2 | 165.9° | 177.6° |
| C4 | C3 | C2 | O6 | 48.1° | 57.6° |
| C4 | C3 | C2 | C1 | 74.3° | 62.4° |
| H4 | C4 | C5 | C6 | 73.5° | 63.0° |
| H4 | C4 | C5 | N5 | 42.8° | 56.9° |
| H4 | C4 | C5 | H5 | 166.3° | 177.1° |
| H4 | C4 | C3 | C2 | 73.9° | 63.0° |
| H4 | C4 | C3 | H32 | 46.1° | 56.9° |
| H4 | C4 | C3 | H31 | 166.1° | 177.0° |
| C6 | C5 | N5 | H5 | 120.0° | 120.2° |
| C6 | C5 | N5 | C10 | 143.2° | 155.3° |
| C6 | C5 | N5 | HN5 | 36.9° | 24.6° |
| C5 | C6 | O6 | C2 | 63.2° | 61.1° |
| C5 | C6 | O6 | C7 | 123.2° | 120.0° |
| C5 | C6 | O6 | H6 | 116.8° | 120.0° |
| C5 | C6 | C7 | H6 | 116.8° | 120.1° |
| C5 | C6 | C7 | O7 | 47.1° | 54.9° |
| C5 | C6 | C7 | C8 | 167.0° | 174.9° |
| C5 | C6 | C7 | H7 | 73.0° | 65.1° |
| C5 | N5 | C10 | HN5 | 180.0° | 179.9° |
| C5 | N5 | C10 | O10 | 2.6° | 0.0° |
| C5 | N5 | C10 | C11 | 178.7° | 180.0° |
| N5 | C5 | C6 | O6 | 168.2° | 177.4° |
| N5 | C5 | C6 | C7 | 74.2° | 62.6° |
| N5 | C5 | C6 | H6 | 45.7° | 57.5° |
| H5 | C5 | N5 | C10 | 23.2° | 35.1° |
| H5 | C5 | N5 | HN5 | 156.8° | 144.8° |
| H5 | C5 | C6 | O6 | 68.0° | 62.4° |
| H5 | C5 | C6 | C7 | 49.6° | 57.6° |
| H5 | C5 | C6 | H6 | 169.5° | 177.7° |
| N5 | C10 | O10 | C11 | 178.7° | 180.0° |
| N5 | C10 | C11 | H111 | 178.8° | 0.0° |
| N5 | C10 | C11 | H113 | 61.3° | 120.0° |
| N5 | C10 | C11 | H112 | 58.8° | 120.0° |
| HN5 | N5 | C10 | O10 | 177.4° | 179.9° |
| HN5 | N5 | C10 | C11 | 1.3° | 0.1° |
| O10 | C10 | C11 | H111 | 0.0° | 180.0° |
| O10 | C10 | C11 | H113 | 120.0° | 60.0° |
| O10 | C10 | C11 | H112 | 120.0° | 60.0° |
| C10 | C11 | H111 | H113 | 120.0° | 120.0° |
| C10 | C11 | H111 | H112 | 120.0° | 120.0° |
| C10 | C11 | H113 | H112 | 120.0° | 120.1° |
| H111 | C11 | H113 | H112 | 120.0° | 119.9° |
| C2 | C3 | H32 | H31 | 117.9° | 120.2° |
| C3 | C2 | O2 | O6 | 118.7° | 119.9° |
| C3 | C2 | O2 | C1 | 120.0° | 120.1° |
| C3 | C2 | O6 | C1 | 121.7° | 120.0° |
| C3 | C2 | O2 | CM2 | 166.6° | 65.0° |
| C3 | C2 | C1 | O1A | 154.3° | 124.1° |
| C3 | C2 | C1 | O1B | 26.2° | 55.9° |
| C3 | C2 | O6 | C6 | 58.8° | 61.2° |
| H32 | C3 | C2 | O2 | 74.1° | 62.5° |
| H32 | C3 | C2 | O6 | 168.1° | 177.5° |
| H32 | C3 | C2 | C1 | 45.7° | 57.5° |
| H31 | C3 | C2 | O2 | 45.9° | 57.6° |
| H31 | C3 | C2 | O6 | 71.9° | 62.3° |
| H31 | C3 | C2 | C1 | 165.7° | 177.7° |
| O2 | C2 | O6 | C1 | 120.3° | 120.0° |
| C2 | O2 | CM2 | HM2 | 180.0° | 54.4° |
| C2 | O2 | CM2 | HM2A | 60.0° | 174.4° |
| C2 | O2 | CM2 | HM2B | 60.0° | 65.6° |
| O2 | C2 | C1 | O1A | 86.6° | 4.1° |
| O2 | C2 | C1 | O1B | 92.9° | 175.9° |
| O2 | C2 | O6 | C6 | 176.8° | 178.9° |
| O6 | C2 | O2 | CM2 | 47.9° | 54.9° |
| O6 | C2 | C1 | O1A | 32.8° | 115.9° |
| O6 | C2 | C1 | O1B | 147.7° | 64.1° |
| C2 | O6 | C6 | C7 | 173.6° | 178.9° |
| C2 | O6 | C6 | H6 | 53.6° | 58.8° |
| C1 | C2 | O2 | CM2 | 73.4° | 175.0° |
| C2 | C1 | O1A | O1B | 179.5° | 180.0° |
| C2 | C1 | O1B | HO1B | 179.5° | 179.9° |
| C1 | C2 | O6 | C6 | 62.9° | 58.8° |
| O2 | CM2 | HM2 | HM2A | 120.0° | 120.0° |
| O2 | CM2 | HM2 | HM2B | 120.0° | 120.0° |
| O2 | CM2 | HM2A | HM2B | 120.0° | 120.0° |
| HM2 | CM2 | HM2A | HM2B | 120.0° | 120.0° |
| O1A | C1 | O1B | HO1B | 0.0° | 0.1° |
| O6 | C6 | C7 | H6 | 122.5° | 120.0° |
| O6 | C6 | C7 | O7 | 73.6° | 65.0° |
| O6 | C6 | C7 | C8 | 46.2° | 55.0° |
| O6 | C6 | C7 | H7 | 166.3° | 175.0° |
| C6 | C7 | O7 | C8 | 120.1° | 120.1° |
| C6 | C7 | O7 | H7 | 119.9° | 120.0° |
| C6 | C7 | C8 | H7 | 119.9° | 120.0° |
| C6 | C7 | O7 | HO7 | 180.0° | 60.0° |
| C6 | C7 | C8 | C9 | 167.9° | 180.0° |
| C6 | C7 | C8 | O8 | 47.9° | 59.9° |
| C6 | C7 | C8 | H8 | 73.2° | 60.0° |
| H6 | C6 | C7 | O7 | 163.9° | 175.0° |
| H6 | C6 | C7 | C8 | 76.3° | 65.0° |
| H6 | C6 | C7 | H7 | 43.8° | 55.0° |
| O7 | C7 | C8 | H7 | 120.1° | 120.0° |
| O7 | C7 | C8 | C9 | 72.1° | 59.9° |
| O7 | C7 | C8 | O8 | 167.9° | 180.0° |
| O7 | C7 | C8 | H8 | 46.8° | 60.0° |
| C8 | C7 | O7 | HO7 | 59.9° | 60.1° |
| C7 | C8 | C9 | O8 | 118.6° | 120.1° |
| C7 | C8 | C9 | H8 | 120.3° | 120.0° |
| C7 | C8 | O8 | H8 | 120.3° | 119.9° |
| C7 | C8 | O8 | HO8 | 64.8° | 60.0° |
| C7 | C8 | C9 | O9 | 56.3° | 175.0° |
| C7 | C8 | C9 | H92 | 176.3° | 54.9° |
| C7 | C8 | C9 | H91 | 63.7° | 65.1° |
| H7 | C7 | O7 | HO7 | 60.1° | 180.0° |
| H7 | C7 | C8 | C9 | 48.0° | 60.0° |
| H7 | C7 | C8 | O8 | 72.0° | 60.1° |
| H7 | C7 | C8 | H8 | 166.9° | NaN° |
| C9 | C8 | O8 | H8 | 118.8° | 120.0° |
| C9 | C8 | O8 | HO8 | 174.4° | 60.1° |
| C8 | C9 | O9 | H92 | 120.0° | 120.1° |
| C8 | C9 | O9 | H91 | 120.0° | 119.9° |
| C8 | C9 | H92 | H91 | 120.9° | 120.0° |
| C8 | C9 | O9 | CA9 | 179.1° | 180.0° |
| O8 | C8 | C9 | O9 | 62.3° | 64.9° |
| O8 | C8 | C9 | H92 | 57.7° | 175.0° |
| O8 | C8 | C9 | H91 | 177.7° | 55.0° |
| H8 | C8 | O8 | HO8 | 55.5° | 179.9° |
| H8 | C8 | C9 | O9 | 176.6° | 55.0° |
| H8 | C8 | C9 | H92 | 63.4° | 65.0° |
| H8 | C8 | C9 | H91 | 56.6° | 175.0° |
| O9 | C9 | H92 | H91 | 120.9° | 120.0° |
| C9 | O9 | CA9 | OA9 | 10.3° | 0.1° |
| C9 | O9 | CA9 | CM9 | 170.1° | 180.0° |
| H92 | C9 | O9 | CA9 | 60.9° | 60.0° |
| H91 | C9 | O9 | CA9 | 59.1° | 60.0° |
| O9 | CA9 | OA9 | CM9 | 179.6° | 180.0° |
| O9 | CA9 | CM9 | HM9 | 179.6° | 0.0° |
| O9 | CA9 | CM9 | HM9A | 59.6° | 120.0° |
| O9 | CA9 | CM9 | HM9B | 60.4° | 119.9° |
| OA9 | CA9 | CM9 | HM9 | 0.0° | 180.0° |
| OA9 | CA9 | CM9 | HM9A | 120.0° | 60.0° |
| OA9 | CA9 | CM9 | HM9B | 120.0° | 60.0° |
| CA9 | CM9 | HM9 | HM9A | 120.0° | 120.0° |
| CA9 | CM9 | HM9 | HM9B | 120.0° | 120.0° |
| CA9 | CM9 | HM9A | HM9B | 120.0° | 120.0° |
| HM9 | CM9 | HM9A | HM9B | 120.0° | 120.0° |
