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SH5

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
O3'C3'sing1.43Å1.45Å
O2'C2'sing1.43Å1.43Å
C2'C3'sing1.55Å1.49Å
C2'C1'sing1.55Å1.53Å
C3'C4'sing1.54Å1.52Å
C4'C5'sing1.53Å1.51Å
C4'O4'sing1.44Å1.44Å
OAMPALdoub1.48Å1.47Å
C5'O5'sing1.43Å1.41Å
C1'O4'sing1.44Å1.46Å
C1'N9sing1.46Å1.47Å
O5'PALsing1.61Å1.58Å
PALOANsing1.61Å1.54Å
PALOAKsing1.61Å1.61Å
N9C8sing1.36Å1.34ÅAromatic
N9C4sing1.37Å1.33ÅAromatic
C8N7doub1.30Å1.33ÅAromatic
OAKCAIsing1.34Å1.36Å
C4N3doub1.33Å1.35ÅAromatic
C4C5sing1.40Å1.34ÅAromatic
N3C2sing1.32Å1.39ÅAromatic
N7C5sing1.35Å1.34ÅAromatic
CAIOAJdoub1.21Å1.23Å
CAICAHsing1.51Å1.54Å
C5C6doub1.41Å1.34ÅAromatic
C2N1doub1.32Å1.40ÅAromatic
CAHCAGsing1.53Å1.53Å
C6N1sing1.33Å1.34ÅAromatic
C6N6sing1.38Å1.33Å
CAGCAFsing1.53Å1.53Å
CAFCAEsing1.53Å1.53Å
CAECADsing1.53Å1.53Å
CADCACsing1.53Å1.53Å
CACCABsing1.53Å1.53Å
BRACABsing1.97Å1.96Å
CABH1sing1.09Å1.10Å
CABH2sing1.09Å1.10Å
CACH3sing1.09Å1.10Å
CACH4sing1.09Å1.10Å
CADH5sing1.09Å1.10Å
CADH6sing1.09Å1.10Å
CAEH7sing1.09Å1.10Å
CAEH8sing1.09Å1.10Å
CAFH9sing1.09Å1.10Å
CAFH10sing1.09Å1.10Å
CAGH11sing1.09Å1.10Å
CAGH12sing1.09Å1.10Å
CAHH13sing1.09Å1.10Å
CAHH14sing1.09Å1.10Å
OANH15sing0.97Å0.95Å
C5'H16sing1.09Å1.10Å
C5'H17sing1.09Å1.10Å
C4'H18sing1.09Å1.10Å
C3'H19sing1.09Å1.10Å
O3'H20sing0.97Å0.95Å
C2'H21sing1.09Å1.10Å
O2'H22sing0.97Å0.95Å
C1'H23sing1.09Å1.10Å
C8H24sing1.08Å1.08Å
C2H25sing1.08Å1.08Å
N6H26sing0.97Å1.00Å
N6H27sing0.97Å1.00Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O3'C3'C2'112.0°110.6°
O3'C3'C4'110.7°110.5°
O3'C3'H19111.9°110.5°
C3'O3'H20109.5°114.0°
O2'C2'C3'110.9°110.9°
O2'C2'C1'107.9°110.9°
O2'C2'H21113.0°110.9°
C2'O2'H22109.5°114.0°
C3'C2'C1'100.9°102.1°
C2'C3'C4'99.5°104.1°
C2'C3'H19111.3°110.5°
C3'C2'H21112.0°110.9°
C2'C1'O4'105.7°103.5°
C2'C1'N9113.1°110.6°
C1'C2'H21111.5°110.9°
C2'C1'H23108.8°110.6°
C3'C4'C5'109.1°109.8°
C3'C4'O4'105.5°107.3°
C3'C4'H18110.1°110.0°
C4'C3'H19110.9°110.5°
C5'C4'O4'110.7°109.9°
C4'C5'O5'109.4°109.5°
C4'C5'H16109.5°109.5°
C4'C5'H17109.5°109.5°
C5'C4'H18110.2°109.9°
C4'O4'C1'106.8°107.0°
O4'C4'H18111.2°109.9°
OAMPALO5'113.1°109.5°
OAMPALOAN114.3°109.5°
OAMPALOAK110.8°109.5°
C5'O5'PAL118.8°123.0°
O5'C5'H16109.5°109.5°
O5'C5'H17109.5°109.4°
O4'C1'N9109.9°110.6°
O4'C1'H23109.7°110.6°
C1'N9C8133.3°126.3°
C1'N9C4118.5°126.3°
N9C1'H23109.6°110.6°
O5'PALOAN105.2°109.4°
O5'PALOAK109.5°109.4°
OANPALOAK103.5°109.5°
PALOANH15109.5°114.0°
PALOAKCAI122.4°117.0°
C8N9C4108.2°107.4°
N9C8N7108.3°110.0°
N9C8H24125.8°125.0°
N9C4N3130.6°134.9°
N9C4C5107.7°106.0°
C8N7C5107.4°109.4°
N7C8H24125.8°125.0°
OAKCAIOAJ124.1°120.0°
OAKCAICAH112.3°120.0°
N3C4C5121.7°119.1°
C4N3C2119.0°120.6°
C4C5N7108.4°107.2°
C4C5C6119.7°118.2°
N3C2N1118.2°122.4°
N3C2H25120.9°118.8°
N7C5C6131.9°134.7°
OAJCAICAH123.7°120.0°
CAICAHCAG114.1°109.5°
CAICAHH13108.3°109.5°
CAICAHH14108.3°109.5°
C5C6N1121.7°118.5°
C5C6N6117.4°120.8°
C2N1C6119.6°121.2°
N1C2H25120.9°118.8°
CAHCAGCAF108.5°109.4°
CAHCAGH11109.7°109.4°
CAHCAGH12109.7°109.5°
CAGCAHH13108.3°109.5°
CAGCAHH14108.3°109.5°
N1C6N6120.9°120.7°
C6N6H26109.5°120.0°
C6N6H27109.5°120.0°
CAGCAFCAE110.3°109.5°
CAGCAFH9109.3°109.5°
CAGCAFH10109.2°109.5°
CAFCAGH11109.7°109.5°
CAFCAGH12109.7°109.5°
CAFCAECAD110.3°109.5°
CAFCAEH7109.3°109.5°
CAFCAEH8109.3°109.4°
CAECAFH9109.2°109.5°
CAECAFH10109.3°109.4°
CAECADCAC110.3°109.4°
CAECADH5109.2°109.5°
CAECADH6109.3°109.5°
CADCAEH7109.3°109.5°
CADCAEH8109.2°109.5°
CADCACCAB109.9°109.5°
CADCACH3109.4°109.5°
CADCACH4109.4°109.5°
CACCADH5109.3°109.4°
CACCADH6109.3°109.5°
CACCABBRA112.3°109.5°
CACCABH1108.8°109.4°
CACCABH2108.7°109.4°
CABCACH3109.3°109.5°
CABCACH4109.3°109.5°
BRACABH1108.8°109.5°
BRACABH2108.7°109.5°
H1CABH2109.5°109.5°
H3CACH4109.5°109.5°
H5CADH6109.5°109.5°
H7CAEH8109.5°109.4°
H9CAFH10109.5°109.4°
H11CAGH12109.5°109.6°
H13CAHH14109.5°109.4°
H16C5'H17109.5°109.5°
H26N6H27109.4°120.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O3'C3'C2'O2'47.5°20.4°
O3'C3'C2'C4'117.0°118.7°
O3'C3'C2'H19126.1°122.6°
O3'C3'C2'C1'161.7°97.8°
O3'C3'C4'H19124.8°122.6°
O3'C3'C4'C5'81.6°119.8°
O3'C3'C4'O4'159.5°120.8°
O3'C3'C4'H1839.4°1.3°
O3'C3'C2'H2179.7°144.0°
O2'C2'C3'C1'114.1°118.2°
O2'C2'C3'H21127.2°123.6°
O2'C2'C1'H21124.6°123.6°
O2'C2'C3'C4'69.5°139.1°
O2'C2'C1'O4'82.4°155.2°
O2'C2'C1'N9157.3°86.3°
O2'C2'C3'H19173.6°102.3°
O2'C2'C1'H2335.3°36.7°
C3'C2'C1'H21119.0°118.2°
C2'C3'C4'H19117.2°118.7°
C2'C3'C4'C5'160.4°121.5°
C2'C3'C4'O4'41.5°2.0°
C3'C2'C1'O4'34.0°37.0°
C3'C2'C1'N986.3°155.5°
C2'C3'C4'H1878.5°117.5°
C2'C3'O3'H20180.0°65.3°
C3'C2'O2'H22180.0°61.5°
C3'C2'C1'H23151.7°81.5°
C1'C2'C3'C4'44.7°20.9°
C2'C1'O4'C4'8.2°40.1°
C2'C1'O4'N9122.3°118.5°
C2'C1'O4'H23117.2°118.5°
C2'C1'N9H23121.6°123.0°
C2'C1'N9C88.2°95.0°
C2'C1'N9C4171.4°84.8°
C1'C2'C3'H1972.3°139.6°
C1'C2'O2'H2270.3°174.2°
C3'C4'C5'O4'115.6°117.8°
C3'C4'C5'H18121.0°121.1°
C3'C4'O4'H18119.3°119.6°
C3'C4'C5'O5'175.0°175.7°
C3'C4'O4'C1'20.7°26.5°
C3'C4'C5'H1665.1°64.3°
C3'C4'C5'H1755.0°55.7°
C4'C3'O3'H2069.9°180.0°
C4'C3'C2'H21163.3°97.3°
C5'C4'O4'H18122.8°121.0°
C4'C5'O5'H16120.0°120.0°
C4'C5'O5'H17120.0°120.0°
C5'C4'O4'C1'138.6°145.9°
C4'C5'O5'PAL166.2°180.0°
C4'C5'H16H17120.1°120.0°
C5'C4'C3'H1943.2°2.8°
O4'C4'C5'O5'59.3°66.5°
C4'O4'C1'N9114.2°158.6°
O4'C4'C5'H16179.3°53.5°
O4'C4'C5'H1760.7°173.6°
O4'C4'C3'H1975.7°116.7°
C4'O4'C1'H23125.3°78.4°
OAMPALO5'C5'46.9°54.9°
OAMPALO5'OAN125.4°120.0°
OAMPALO5'OAK124.0°120.0°
OAMPALOANOAK120.6°120.1°
OAMPALOAKCAI170.5°55.0°
OAMPALOANH150.0°180.0°
C5'O5'PALOAN172.2°65.1°
C5'O5'PALOAK77.2°175.0°
O5'C5'H16H17120.0°120.0°
O5'C5'C4'H1864.1°54.5°
O4'C1'N9H23120.6°123.0°
O4'C1'N9C8109.6°19.1°
O4'C1'N9C470.8°161.2°
C1'O4'C4'H1898.6°93.1°
O4'C1'C2'H21153.0°81.2°
C1'N9C8C4179.6°179.8°
C1'N9C8N7179.9°180.0°
C1'N9C4N30.4°0.0°
C1'N9C4C5179.7°179.9°
N9C1'C2'H2132.7°37.3°
C1'N9C8H240.1°0.0°
O5'PALOANOAK114.8°119.9°
O5'PALOAKCAI64.2°175.0°
O5'PALOANH15124.6°60.0°
PALO5'C5'H1646.2°59.9°
PALO5'C5'H1773.8°60.1°
OANPALOAKCAI47.6°65.0°
PALOAKCAIOAJ15.9°0.0°
PALOAKCAICAH164.7°180.0°
OAKPALOANH15120.6°59.9°
N9C8N7H24180.0°180.0°
C8N9C4N3180.0°179.8°
C8N9C4C50.0°0.3°
N9C8N7C50.5°0.0°
C8N9C1'H23129.8°142.0°
C4N9C8N70.3°0.2°
N9C4N3C5180.0°179.9°
N9C4N3C2179.9°179.9°
N9C4C5N70.3°0.3°
N9C4C5C6179.7°179.9°
C4N9C1'H2349.8°38.2°
C4N9C8H24179.7°179.8°
C8N7C5C40.5°0.2°
C8N7C5C6179.6°180.0°
OAKCAIOAJCAH179.3°180.0°
OAKCAICAHCAG173.5°180.0°
OAKCAICAHH1365.8°60.0°
OAKCAICAHH1452.8°60.0°
N3C4C5N7179.7°179.7°
N3C4C5C60.3°0.1°
C4N3C2N10.3°0.0°
C4N3C2H25179.7°180.0°
C5C4N3C20.1°0.2°
C4C5N7C6180.0°179.8°
C4C5C6N10.4°0.4°
C4C5C6N6179.5°179.8°
N3C2N1H25180.0°180.0°
N3C2N1C60.2°0.3°
N7C5C6N1179.6°179.3°
N7C5C6N60.5°0.0°
C5N7C8H24179.6°180.0°
OAJCAICAHCAG5.9°0.0°
OAJCAICAHH13114.8°120.1°
OAJCAICAHH14126.6°120.0°
CAICAHCAGH13120.7°120.0°
CAICAHCAGH14120.7°120.0°
CAICAHCAGCAF160.1°180.0°
CAICAHCAGH1140.3°60.0°
CAICAHCAGH1280.0°60.0°
CAICAHH13H14117.9°120.0°
C5C6N1C20.1°0.5°
C5C6N1N6179.9°179.4°
C5C6N6H26179.9°0.0°
C5C6N6H2760.1°180.0°
C2N1C6N6179.8°179.9°
CAHCAGCAFH11119.8°119.9°
CAHCAGCAFH12119.8°120.0°
CAHCAGCAFCAE179.1°180.0°
CAHCAGCAFH960.7°60.0°
CAHCAGCAFH1059.0°60.0°
CAHCAGH11H12120.4°120.0°
CAGCAHH13H14117.9°120.0°
C6N1C2H25179.7°179.7°
N1C6N6H260.0°179.4°
N1C6N6H27120.0°0.7°
C6N6H26H27120.0°180.0°
CAGCAFCAEH9120.1°120.0°
CAGCAFCAEH10120.1°120.0°
CAGCAFCAECAD170.2°180.0°
CAGCAFCAEH750.0°60.0°
CAGCAFCAEH869.7°60.0°
CAGCAFH9H10119.6°120.1°
CAFCAGH11H12120.5°120.0°
CAFCAGCAHH1379.2°60.0°
CAFCAGCAHH1439.4°60.0°
CAFCAECADH7120.2°120.0°
CAFCAECADH8120.1°120.0°
CAFCAECADCAC154.3°180.0°
CAFCAECADH585.5°60.0°
CAFCAECADH634.2°60.0°
CAFCAEH7H8119.6°119.9°
CAECAFH9H10119.6°119.9°
CAECAFCAGH1159.3°60.0°
CAECAFCAGH1261.0°60.1°
CAECADCACH5120.1°119.9°
CAECADCACH6120.1°120.0°
CAECADCACCAB169.2°180.0°
CAECADCACH370.7°60.0°
CAECADCACH449.2°60.0°
CAECADH5H6119.6°120.1°
CADCAEH7H8119.6°120.0°
CADCAECAFH969.7°60.0°
CADCAECAFH1050.0°60.0°
CADCACCABH3120.1°120.0°
CADCACCABH4120.1°120.0°
CADCACCABBRA62.7°180.0°
CADCACCABH1176.8°60.0°
CADCACCABH257.7°60.0°
CADCACH3H4119.8°120.0°
CACCADH5H6119.6°120.0°
CACCADCAEH734.2°60.0°
CACCADCAEH885.6°60.0°
CACCABBRAH1120.4°120.0°
CACCABBRAH2120.4°120.0°
CACCABH1H2118.7°119.9°
CABCACH3H4119.8°120.0°
CABCACCADH549.1°60.0°
CABCACCADH670.6°60.0°
BRACABH1H2118.7°120.1°
BRACABCACH357.4°60.0°
BRACABCACH4177.2°60.0°
H1CABCACH363.1°180.0°
H1CABCACH456.8°60.0°
H2CABCACH3177.8°60.0°
H2CABCACH462.4°179.9°
H3CACCADH5169.2°180.0°
H3CACCADH649.4°60.0°
H4CACCADH570.9°59.9°
H4CACCADH6169.3°180.0°
H5CADCAEH7154.3°179.9°
H5CADCAEH834.6°59.9°
H6CADCAEH786.0°60.0°
H6CADCAEH8154.3°180.0°
H7CAECAFH9170.1°180.0°
H7CAECAFH1070.1°60.1°
H8CAECAFH950.4°60.1°
H8CAECAFH10170.1°180.0°
H9CAFCAGH11179.4°179.9°
H9CAFCAGH1259.1°60.0°
H10CAFCAGH1160.8°59.9°
H10CAFCAGH12178.8°180.0°
H11CAGCAHH13161.0°179.9°
H11CAGCAHH1480.4°60.0°
H12CAGCAHH1340.7°60.0°
H12CAGCAHH14159.3°180.0°
H16C5'C4'H1855.9°174.6°
H17C5'C4'H18176.0°65.4°
H18C4'C3'H19164.2°123.8°
H19C3'O3'H2054.3°57.4°
H19C3'C2'H2146.4°21.3°
H21C2'O2'H2253.4°62.1°
H21C2'C1'H2389.3°160.3°

223166

PDB entries from 2024-07-31

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