SGP
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| P | S1P | doub | 1.86Å | 1.99Å | |
| P | O1P | sing | 1.61Å | 1.41Å | |
| P | O3' | sing | 1.63Å | 1.54Å | |
| P | O2' | sing | 1.63Å | 1.60Å | |
| O1P | HOP1 | sing | 0.97Å | 0.95Å | |
| O5' | C5' | sing | 1.43Å | 1.43Å | |
| O5' | HO5' | sing | 0.97Å | 0.95Å | |
| C5' | C4' | sing | 1.53Å | 1.49Å | |
| C5' | H5'1 | sing | 1.09Å | 1.11Å | |
| C5' | H5'2 | sing | 1.09Å | 1.11Å | |
| C4' | O4' | sing | 1.44Å | 1.46Å | |
| C4' | C3' | sing | 1.54Å | 1.51Å | |
| C4' | H4' | sing | 1.09Å | 1.11Å | |
| O4' | C1' | sing | 1.44Å | 1.40Å | |
| C3' | O3' | sing | 1.45Å | 1.54Å | |
| C3' | C2' | sing | 1.55Å | 1.55Å | |
| C3' | H3' | sing | 1.09Å | 1.11Å | |
| C2' | O2' | sing | 1.44Å | 1.43Å | |
| C2' | C1' | sing | 1.55Å | 1.53Å | |
| C2' | H2' | sing | 1.09Å | 1.12Å | |
| C1' | N9 | sing | 1.46Å | 1.39Å | |
| C1' | H1' | sing | 1.09Å | 1.11Å | |
| N9 | C8 | sing | 1.37Å | 1.35Å | Aromatic |
| N9 | C4 | sing | 1.37Å | 1.38Å | Aromatic |
| C8 | N7 | doub | 1.30Å | 1.32Å | Aromatic |
| C8 | H8 | sing | 1.08Å | 1.10Å | |
| N7 | C5 | sing | 1.36Å | 1.39Å | Aromatic |
| C5 | C6 | sing | 1.41Å | 1.40Å | |
| C5 | C4 | doub | 1.40Å | 1.38Å | Aromatic |
| C6 | O6 | doub | 1.22Å | 1.23Å | |
| C6 | N1 | sing | 1.35Å | 1.37Å | |
| N1 | C2 | sing | 1.36Å | 1.39Å | |
| N1 | HN1 | sing | 0.97Å | 1.02Å | |
| C2 | N2 | sing | 1.37Å | 1.35Å | |
| C2 | N3 | doub | 1.31Å | 1.30Å | |
| N2 | HN21 | sing | 0.97Å | 1.02Å | |
| N2 | HN22 | sing | 0.97Å | 1.02Å | |
| N3 | C4 | sing | 1.34Å | 1.37Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| S1P | P | O1P | 112.5° | 112.1° |
| S1P | P | O3' | 118.4° | 110.7° |
| S1P | P | O2' | 106.1° | 110.8° |
| O1P | P | O3' | 105.8° | 110.7° |
| O1P | P | O2' | 115.7° | 110.6° |
| P | O1P | HOP1 | 112.5° | 106.8° |
| O3' | P | O2' | 97.9° | 101.5° |
| P | O3' | C3' | 109.9° | 102.1° |
| P | O2' | C2' | 118.9° | 105.6° |
| C5' | O5' | HO5' | 117.7° | 106.9° |
| O5' | C5' | C4' | 117.7° | 109.5° |
| O5' | C5' | H5'1 | 109.2° | 109.5° |
| O5' | C5' | H5'2 | 109.2° | 109.4° |
| C4' | C5' | H5'1 | 109.2° | 109.5° |
| C4' | C5' | H5'2 | 109.3° | 109.4° |
| C5' | C4' | O4' | 119.5° | 109.9° |
| C5' | C4' | C3' | 118.7° | 110.0° |
| C5' | C4' | H4' | 91.9° | 109.8° |
| H5'1 | C5' | H5'2 | 100.8° | 109.5° |
| O4' | C4' | C3' | 100.2° | 107.4° |
| O4' | C4' | H4' | 113.3° | 109.9° |
| C4' | O4' | C1' | 109.6° | 107.0° |
| C3' | C4' | H4' | 114.2° | 109.8° |
| C4' | C3' | O3' | 111.4° | 107.9° |
| C4' | C3' | C2' | 103.8° | 104.0° |
| C4' | C3' | H3' | 112.3° | 112.4° |
| O4' | C1' | C2' | 105.3° | 103.6° |
| O4' | C1' | N9 | 111.2° | 110.6° |
| O4' | C1' | H1' | 121.8° | 110.6° |
| O3' | C3' | C2' | 110.6° | 107.3° |
| O3' | C3' | H3' | 105.8° | 112.3° |
| C2' | C3' | H3' | 113.1° | 112.5° |
| C3' | C2' | O2' | 100.7° | 109.6° |
| C3' | C2' | C1' | 104.0° | 102.3° |
| C3' | C2' | H2' | 116.7° | 112.5° |
| O2' | C2' | C1' | 105.4° | 109.8° |
| O2' | C2' | H2' | 115.6° | 111.2° |
| C1' | C2' | H2' | 112.8° | 111.0° |
| C2' | C1' | N9 | 128.4° | 110.7° |
| C2' | C1' | H1' | 99.3° | 110.6° |
| N9 | C1' | H1' | 91.4° | 110.5° |
| C1' | N9 | C8 | 126.3° | 126.2° |
| C1' | N9 | C4 | 130.0° | 126.3° |
| C8 | N9 | C4 | 103.5° | 107.5° |
| N9 | C8 | N7 | 116.0° | 109.8° |
| N9 | C8 | H8 | 123.1° | 125.1° |
| N9 | C4 | C5 | 108.2° | 106.1° |
| N9 | C4 | N3 | 124.6° | 134.2° |
| N7 | C8 | H8 | 120.9° | 125.1° |
| C8 | N7 | C5 | 103.7° | 109.3° |
| N7 | C5 | C6 | 134.2° | 134.1° |
| N7 | C5 | C4 | 108.6° | 107.3° |
| C6 | C5 | C4 | 117.2° | 118.7° |
| C5 | C6 | O6 | 129.7° | 120.9° |
| C5 | C6 | N1 | 115.2° | 118.3° |
| C5 | C4 | N3 | 127.0° | 119.6° |
| O6 | C6 | N1 | 115.1° | 120.8° |
| C6 | N1 | C2 | 123.1° | 120.3° |
| C6 | N1 | HN1 | 117.9° | 119.8° |
| C2 | N1 | HN1 | 119.0° | 119.9° |
| N1 | C2 | N2 | 114.8° | 119.0° |
| N1 | C2 | N3 | 123.6° | 121.9° |
| N2 | C2 | N3 | 121.5° | 119.0° |
| C2 | N2 | HN21 | 114.8° | 120.0° |
| C2 | N2 | HN22 | 110.2° | 120.0° |
| C2 | N3 | C4 | 113.7° | 121.1° |
| HN21 | N2 | HN22 | 110.3° | 120.0° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| S1P | P | O1P | O3' | 130.7° | 124.1° |
| S1P | P | O1P | O2' | 122.2° | 124.2° |
| S1P | P | O3' | O2' | 113.2° | 117.6° |
| S1P | P | O1P | HOP1 | 180.0° | 62.3° |
| S1P | P | O3' | C3' | 118.4° | 82.3° |
| S1P | P | O2' | C2' | 136.0° | 95.6° |
| O1P | P | O3' | O2' | 119.6° | 117.4° |
| O1P | P | O3' | C3' | 114.4° | 152.7° |
| O1P | P | O2' | C2' | 98.4° | 139.5° |
| O3' | P | O1P | HOP1 | 49.3° | 61.9° |
| P | O3' | C3' | C4' | 117.6° | 147.2° |
| P | O3' | C3' | C2' | 2.6° | 35.7° |
| P | O3' | C3' | H3' | 120.1° | 88.4° |
| O3' | P | O2' | C2' | 13.4° | 22.0° |
| O2' | P | O1P | HOP1 | 57.8° | 173.6° |
| O2' | P | O3' | C3' | 5.2° | 35.3° |
| P | O2' | C2' | C3' | 14.9° | 1.6° |
| P | O2' | C2' | C1' | 93.1° | 113.2° |
| P | O2' | C2' | H2' | 141.7° | 123.5° |
| O5' | C5' | C4' | H5'1 | 125.3° | 120.0° |
| O5' | C5' | C4' | H5'2 | 125.3° | 119.9° |
| O5' | C5' | H5'1 | H5'2 | 114.9° | 120.0° |
| O5' | C5' | C4' | O4' | 91.8° | 61.4° |
| O5' | C5' | C4' | C3' | 30.9° | 179.5° |
| O5' | C5' | C4' | H4' | 149.9° | 59.6° |
| HO5' | O5' | C5' | C4' | 180.0° | 180.0° |
| HO5' | O5' | C5' | H5'1 | 54.7° | 59.9° |
| HO5' | O5' | C5' | H5'2 | 54.7° | 60.0° |
| C4' | C5' | H5'1 | H5'2 | 115.0° | 120.0° |
| C5' | C4' | O4' | C3' | 131.4° | 119.6° |
| C5' | C4' | O4' | H4' | 106.5° | 121.0° |
| C5' | C4' | C3' | H4' | 106.7° | 121.0° |
| C5' | C4' | O4' | C1' | 89.4° | 146.1° |
| C5' | C4' | C3' | O3' | 145.5° | 124.4° |
| C5' | C4' | C3' | C2' | 95.4° | 121.8° |
| C5' | C4' | C3' | H3' | 27.1° | 0.1° |
| H5'1 | C5' | C4' | O4' | 142.9° | 178.6° |
| H5'1 | C5' | C4' | C3' | 94.4° | 60.5° |
| H5'1 | C5' | C4' | H4' | 24.6° | 60.4° |
| H5'2 | C5' | C4' | O4' | 33.4° | 58.5° |
| H5'2 | C5' | C4' | C3' | 156.1° | 59.5° |
| H5'2 | C5' | C4' | H4' | 84.8° | 179.5° |
| O4' | C4' | C3' | H4' | 121.4° | 119.4° |
| O4' | C4' | C3' | O3' | 82.6° | 116.0° |
| O4' | C4' | C3' | C2' | 36.5° | 2.2° |
| O4' | C4' | C3' | H3' | 159.0° | 119.7° |
| C4' | O4' | C1' | C2' | 29.3° | 39.8° |
| C4' | O4' | C1' | N9 | 113.5° | 158.4° |
| C4' | O4' | C1' | H1' | 140.8° | 78.8° |
| C3' | C4' | O4' | C1' | 42.1° | 26.4° |
| C4' | C3' | O3' | C2' | 115.0° | 111.5° |
| C4' | C3' | O3' | H3' | 122.2° | 124.4° |
| C4' | C3' | C2' | H3' | 121.9° | 121.9° |
| C4' | C3' | C2' | O2' | 129.7° | 137.0° |
| C4' | C3' | C2' | C1' | 20.7° | 20.5° |
| C4' | C3' | C2' | H2' | 104.3° | 98.7° |
| H4' | C4' | O4' | C1' | 164.1° | 92.9° |
| H4' | C4' | C3' | O3' | 38.8° | 3.4° |
| H4' | C4' | C3' | C2' | 157.9° | 117.2° |
| H4' | C4' | C3' | H3' | 79.6° | 120.9° |
| O4' | C1' | C2' | C3' | 4.1° | 36.6° |
| O4' | C1' | C2' | O2' | 101.5° | 153.0° |
| O4' | C1' | C2' | N9 | 134.0° | 118.6° |
| O4' | C1' | C2' | H1' | 126.7° | 118.6° |
| O4' | C1' | C2' | H2' | 131.5° | 83.6° |
| O4' | C1' | N9 | H1' | 125.1° | 122.9° |
| O4' | C1' | N9 | C8 | 18.0° | 26.4° |
| O4' | C1' | N9 | C4 | 157.2° | 153.6° |
| O3' | C3' | C2' | H3' | 118.4° | 124.0° |
| O3' | C3' | C2' | O2' | 10.1° | 22.9° |
| O3' | C3' | C2' | C1' | 99.0° | 93.6° |
| O3' | C3' | C2' | H2' | 136.1° | 147.2° |
| C3' | C2' | O2' | C1' | 108.0° | 111.7° |
| C3' | C2' | O2' | H2' | 126.7° | 125.1° |
| C3' | C2' | C1' | H2' | 127.4° | 120.3° |
| C3' | C2' | C1' | N9 | 129.9° | 155.3° |
| C3' | C2' | C1' | H1' | 130.8° | 81.9° |
| H3' | C3' | C2' | O2' | 108.3° | 101.1° |
| H3' | C3' | C2' | C1' | 142.6° | 142.4° |
| H3' | C3' | C2' | H2' | 17.7° | 23.2° |
| O2' | C2' | C1' | H2' | 127.0° | 123.4° |
| O2' | C2' | C1' | N9 | 124.5° | 88.4° |
| O2' | C2' | C1' | H1' | 25.3° | 34.5° |
| C2' | C1' | N9 | H1' | 103.0° | 122.9° |
| C2' | C1' | N9 | C8 | 113.9° | 87.9° |
| C2' | C1' | N9 | C4 | 70.9° | 92.1° |
| H2' | C2' | C1' | N9 | 2.5° | 35.0° |
| H2' | C2' | C1' | H1' | 101.7° | 157.8° |
| C1' | N9 | C8 | C4 | 176.2° | 180.0° |
| C1' | N9 | C8 | N7 | 176.5° | 180.0° |
| C1' | N9 | C8 | H8 | 3.6° | 0.0° |
| C1' | N9 | C4 | C5 | 176.4° | 180.0° |
| C1' | N9 | C4 | N3 | 8.0° | 0.1° |
| H1' | C1' | N9 | C8 | 143.1° | 149.3° |
| H1' | C1' | N9 | C4 | 32.1° | 30.8° |
| N9 | C8 | N7 | H8 | 180.0° | 180.0° |
| N9 | C8 | N7 | C5 | 0.0° | 0.0° |
| C8 | N9 | C4 | C5 | 0.4° | 0.0° |
| C8 | N9 | C4 | N3 | 176.0° | 179.9° |
| C4 | N9 | C8 | N7 | 0.2° | 0.0° |
| C4 | N9 | C8 | H8 | 179.8° | 179.9° |
| N9 | C4 | C5 | N7 | 0.4° | 0.0° |
| N9 | C4 | C5 | C6 | 179.1° | 180.0° |
| N9 | C4 | C5 | N3 | 175.5° | 179.9° |
| N9 | C4 | N3 | C2 | 179.6° | 180.0° |
| C8 | N7 | C5 | C6 | 178.7° | 180.0° |
| C8 | N7 | C5 | C4 | 0.2° | 0.0° |
| H8 | C8 | N7 | C5 | 180.0° | 180.0° |
| N7 | C5 | C6 | C4 | 178.4° | 179.9° |
| N7 | C5 | C6 | O6 | 0.3° | 0.0° |
| N7 | C5 | C6 | N1 | 178.4° | 179.7° |
| N7 | C5 | C4 | N3 | 175.9° | 180.0° |
| C5 | C6 | O6 | N1 | 178.0° | 179.8° |
| C5 | C6 | N1 | C2 | 2.2° | 0.5° |
| C5 | C6 | N1 | HN1 | 177.8° | 180.0° |
| C6 | C5 | C4 | N3 | 5.4° | 0.1° |
| C4 | C5 | C6 | O6 | 178.7° | 180.0° |
| C4 | C5 | C6 | N1 | 3.3° | 0.2° |
| C5 | C4 | N3 | C2 | 5.5° | 0.1° |
| O6 | C6 | N1 | C2 | 179.4° | 179.7° |
| O6 | C6 | N1 | HN1 | 0.6° | 0.2° |
| C6 | N1 | C2 | HN1 | 180.0° | 179.5° |
| C6 | N1 | C2 | N2 | 178.8° | 179.8° |
| C6 | N1 | C2 | N3 | 2.8° | 0.5° |
| N1 | C2 | N2 | N3 | 178.4° | 179.7° |
| N1 | C2 | N2 | HN21 | 180.0° | 179.8° |
| N1 | C2 | N2 | HN22 | 54.7° | 0.7° |
| N1 | C2 | N3 | C4 | 4.0° | 0.2° |
| HN1 | N1 | C2 | N2 | 1.2° | 0.3° |
| HN1 | N1 | C2 | N3 | 177.2° | 180.0° |
| C2 | N2 | HN21 | HN22 | 125.2° | 179.5° |
| N2 | C2 | N3 | C4 | 177.7° | 179.9° |
| N3 | C2 | N2 | HN21 | 1.6° | 0.1° |
| N3 | C2 | N2 | HN22 | 123.7° | 179.7° |
