SG6

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C1	O5	sing	1.43Å	1.41Å
C1	C2	sing	1.53Å	1.46Å
C1	O1	sing	1.43Å	1.41Å
O5	C5	sing	1.43Å	1.44Å
C2	C3	sing	1.53Å	1.45Å
C2	O2	sing	1.43Å	1.40Å
C3	C4	sing	1.53Å	1.48Å
C3	O3	sing	1.43Å	1.40Å
C4	C5	sing	1.53Å	1.53Å
C4	O4	sing	1.45Å	1.41Å
C5	C6	sing	1.53Å	1.53Å
O4	C4C	sing	1.34Å	1.27Å
C4B	C4C	sing	1.51Å	1.49Å
C4C	O4D	doub	1.21Å	1.27Å
C6	O6	sing	1.43Å	1.38Å
O6	S5C	sing	1.52Å	1.48Å
S5C	O5D	doub	1.42Å	1.47Å
S5C	O5E	doub	1.42Å	1.46Å
S5C	N5F	sing	1.66Å	1.57Å
C1	H1	sing	1.09Å	1.10Å
C2	H2	sing	1.09Å	1.10Å
C3	H3	sing	1.09Å	1.10Å
C4	H4	sing	1.09Å	1.10Å
C5	H5	sing	1.09Å	1.10Å
O1	HO1	sing	0.97Å	0.95Å
O2	HO2	sing	0.97Å	0.95Å
O3	HO3	sing	0.97Å	0.95Å
C4B	H4B	sing	1.09Å	1.10Å
C4B	H4BA	sing	1.09Å	1.10Å
C4B	H4BB	sing	1.09Å	1.10Å
C6	H61	sing	1.09Å	1.10Å
C6	H62	sing	1.09Å	1.10Å
N5F	HN5F	sing	0.97Å	1.00Å
N5F	HN5A	sing	0.97Å	1.00Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O5	C1	C2	112.4°	109.4°
O5	C1	O1	113.5°	109.5°
C1	O5	C5	112.2°	114.1°
O5	C1	H1	104.9°	109.4°
C2	C1	O1	110.9°	109.5°
C1	C2	C3	115.3°	109.2°
C1	C2	O2	110.6°	109.5°
C2	C1	H1	107.9°	109.5°
C1	C2	H2	105.8°	109.6°
O1	C1	H1	106.6°	109.5°
C1	O1	HO1	109.5°	114.0°
O5	C5	C4	116.6°	109.4°
O5	C5	C6	111.0°	109.5°
O5	C5	H5	107.3°	109.5°
C3	C2	O2	113.0°	109.5°
C2	C3	C4	110.6°	109.0°
C2	C3	O3	113.2°	109.6°
C3	C2	H2	103.0°	109.5°
C2	C3	H3	109.1°	109.6°
O2	C2	H2	108.4°	109.6°
C2	O2	HO2	109.5°	114.0°
C4	C3	O3	116.8°	109.5°
C3	C4	C5	113.0°	109.2°
C3	C4	O4	113.3°	109.6°
C4	C3	H3	104.6°	109.5°
C3	C4	H4	105.7°	109.5°
O3	C3	H3	101.5°	109.6°
C3	O3	HO3	109.5°	113.9°
C5	C4	O4	113.6°	109.5°
C4	C5	C6	118.6°	109.5°
C5	C4	H4	105.2°	109.5°
C4	C5	H5	96.4°	109.5°
C4	O4	C4C	119.8°	117.0°
O4	C4	H4	105.0°	109.5°
C5	C6	O6	113.2°	109.5°
C6	C5	H5	104.3°	109.5°
C5	C6	H61	108.3°	109.5°
C5	C6	H62	108.3°	109.5°
O4	C4C	C4B	119.2°	120.0°
O4	C4C	O4D	121.4°	120.0°
C4B	C4C	O4D	118.6°	120.0°
C4C	C4B	H4B	109.5°	109.5°
C4C	C4B	H4BA	109.5°	109.5°
C4C	C4B	H4BB	109.5°	109.4°
C6	O6	S5C	123.3°	114.0°
O6	C6	H61	108.2°	109.4°
O6	C6	H62	108.2°	109.4°
O6	S5C	O5D	122.8°	106.4°
O6	S5C	O5E	91.6°	106.4°
O6	S5C	N5F	115.3°	107.2°
O5D	S5C	O5E	93.7°	123.1°
O5D	S5C	N5F	116.6°	106.4°
O5E	S5C	N5F	108.5°	106.4°
S5C	N5F	HN5F	109.5°	120.0°
S5C	N5F	HN5A	109.5°	120.0°
H4B	C4B	H4BA	109.4°	109.5°
H4B	C4B	H4BB	109.4°	109.5°
H4BA	C4B	H4BB	109.5°	109.4°
H61	C6	H62	110.7°	109.5°
HN5F	N5F	HN5A	109.4°	120.0°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O5	C1	C2	O1	128.3°	120.0°
O5	C1	C2	H1	115.2°	120.0°
O5	C1	O1	H1	115.0°	120.0°
O5	C1	C2	C3	58.1°	57.6°
O5	C1	C2	O2	172.2°	177.5°
C1	O5	C5	C4	45.1°	61.1°
C1	O5	C5	C6	174.9°	178.9°
O5	C1	C2	H2	55.0°	62.3°
C1	O5	C5	H5	61.5°	58.8°
O5	C1	O1	HO1	180.0°	60.0°
C2	C1	O1	H1	117.2°	120.1°
C2	C1	O5	C5	51.9°	61.2°
C1	C2	C3	O2	128.5°	119.9°
C1	C2	C3	H2	114.7°	120.0°
C1	C2	O2	H2	115.6°	120.2°
C1	C2	C3	C4	52.2°	57.0°
C1	C2	C3	O3	174.5°	176.8°
C1	C2	C3	H3	62.3°	62.9°
C2	C1	O1	HO1	52.3°	179.9°
C1	C2	O2	HO2	180.0°	60.0°
O1	C1	O5	C5	75.0°	58.9°
O1	C1	C2	C3	70.3°	62.4°
O1	C1	C2	O2	59.4°	57.5°
O1	C1	C2	H2	176.7°	177.7°
O5	C5	C4	C3	40.9°	57.6°
O5	C5	C4	C6	136.8°	120.0°
O5	C5	C4	H5	113.0°	119.9°
O5	C5	C4	O4	89.9°	62.3°
O5	C5	C6	H5	115.2°	120.0°
O5	C5	C6	O6	78.5°	65.0°
C5	O5	C1	H1	168.9°	178.8°
O5	C5	C4	H4	155.7°	177.5°
O5	C5	C6	H61	41.5°	175.0°
O5	C5	C6	H62	161.5°	55.0°
C3	C2	O2	H2	113.5°	120.1°
C2	C3	C4	O3	131.4°	119.8°
C2	C3	C4	H3	117.3°	119.9°
C2	C3	O3	H3	116.7°	120.3°
C2	C3	C4	C5	42.4°	57.0°
C2	C3	C4	O4	88.6°	62.9°
C3	C2	C1	H1	173.2°	177.6°
C2	C3	C4	H4	157.0°	176.9°
C3	C2	O2	HO2	49.1°	179.7°
C2	C3	O3	HO3	180.0°	60.1°
O2	C2	C3	C4	179.2°	176.9°
O2	C2	C3	O3	46.0°	63.3°
O2	C2	C1	H1	57.0°	62.5°
O2	C2	C3	H3	66.2°	57.0°
C4	C3	O3	H3	113.1°	120.2°
C3	C4	C5	O4	130.9°	119.9°
C3	C4	C5	H4	114.8°	119.9°
C3	C4	O4	H4	114.8°	120.2°
C3	C4	C5	C6	177.7°	177.6°
C3	C4	O4	C4C	131.6°	90.0°
C4	C3	C2	H2	62.5°	63.0°
C3	C4	C5	H5	72.0°	62.3°
C4	C3	O3	HO3	49.8°	179.6°
O3	C3	C4	C5	173.8°	176.8°
O3	C3	C4	O4	42.7°	56.9°
O3	C3	C2	H2	70.8°	56.9°
O3	C3	C4	H4	71.7°	63.3°
C5	C4	O4	H4	114.5°	120.1°
C4	C5	C6	H5	105.7°	120.0°
C5	C4	O4	C4C	97.6°	150.3°
C4	C5	C6	O6	60.5°	175.1°
C5	C4	C3	H3	74.9°	62.9°
C4	C5	C6	H61	179.5°	55.1°
C4	C5	C6	H62	59.5°	64.9°
O4	C4	C5	C6	46.9°	57.6°
C4	O4	C4C	C4B	173.5°	180.0°
C4	O4	C4C	O4D	4.2°	0.1°
O4	C4	C3	H3	154.0°	177.2°
O4	C4	C5	H5	157.1°	177.7°
C5	C6	O6	H61	120.0°	120.0°
C5	C6	O6	H62	120.0°	120.0°
C5	C6	O6	S5C	115.1°	180.0°
C6	C5	C4	H4	67.4°	62.5°
C5	C6	H61	H62	118.5°	120.0°
O4	C4C	C4B	O4D	169.6°	179.9°
C4C	O4	C4	H4	16.8°	30.2°
O4	C4C	C4B	H4B	169.6°	0.0°
O4	C4C	C4B	H4BA	70.4°	120.0°
O4	C4C	C4B	H4BB	49.6°	120.1°
C4C	C4B	H4B	H4BA	120.0°	120.1°
C4C	C4B	H4B	H4BB	120.0°	120.0°
C4C	C4B	H4BA	H4BB	120.0°	119.9°
O4D	C4C	C4B	H4B	0.0°	179.9°
O4D	C4C	C4B	H4BA	120.0°	59.9°
O4D	C4C	C4B	H4BB	120.0°	60.0°
C6	O6	S5C	O5D	171.5°	171.4°
C6	O6	S5C	O5E	93.1°	38.5°
C6	O6	S5C	N5F	18.3°	75.0°
O6	C6	C5	H5	166.3°	55.0°
O6	C6	H61	H62	118.4°	120.0°
O6	S5C	O5D	O5E	94.3°	122.9°
O6	S5C	O5D	N5F	152.9°	114.0°
O6	S5C	O5E	N5F	117.4°	114.1°
S5C	O6	C6	H61	4.9°	60.0°
S5C	O6	C6	H62	124.8°	60.0°
O6	S5C	N5F	HN5F	180.0°	150.0°
O6	S5C	N5F	HN5A	60.0°	30.1°
O5D	S5C	O5E	N5F	119.6°	123.0°
O5D	S5C	N5F	HN5F	25.1°	36.6°
O5D	S5C	N5F	HN5A	94.9°	143.6°
O5E	S5C	N5F	HN5F	79.0°	96.4°
O5E	S5C	N5F	HN5A	161.0°	83.5°
S5C	N5F	HN5F	HN5A	120.0°	179.9°
H1	C1	C2	H2	60.2°	57.7°
H1	C1	O1	HO1	65.0°	60.0°
H2	C2	C3	H3	177.0°	177.2°
H2	C2	O2	HO2	64.4°	60.2°
H3	C3	C4	H4	39.7°	57.0°
H3	C3	O3	HO3	63.3°	60.2°
H4	C4	C5	H5	42.8°	57.6°
H5	C5	C6	H61	73.7°	64.9°
H5	C5	C6	H62	46.3°	175.0°
H4B	C4B	H4BA	H4BB	120.0°	120.0°

Definition date:	2011-08-30
Last modified:	2020-07-17
Release status:	REL
Processing site:	PDBJ
Derived from:	3T84