Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| N | CA | sing | 1.47Å | 1.47Å | |
| N | H | sing | 1.01Å | 1.02Å | |
| N | H2 | sing | 1.01Å | 1.02Å | |
| OD | CB | sing | 1.43Å | 1.41Å | |
| OD | HD | sing | 0.97Å | 0.95Å | |
| CB | CA | sing | 1.53Å | 1.53Å | |
| CB | HB3 | sing | 1.09Å | 1.12Å | |
| CB | HB2 | sing | 1.09Å | 1.11Å | |
| CA | C | sing | 1.51Å | 1.52Å | |
| CA | HA | sing | 1.09Å | 1.12Å | |
| C | O | doub | 1.21Å | 1.22Å | |
| C | OXT | sing | 1.34Å | 1.31Å | |
| OXT | HXT | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| CA | N | H | 109.4° | 106.7° |
| CA | N | H2 | 112.2° | 106.7° |
| N | CA | CB | 109.4° | 109.5° |
| N | CA | C | 115.4° | 109.4° |
| N | CA | HA | 104.9° | 109.4° |
| H | N | H2 | 112.2° | 106.7° |
| CB | OD | HD | 110.8° | 106.8° |
| OD | CB | CA | 110.8° | 109.5° |
| OD | CB | HB3 | 111.7° | 109.5° |
| OD | CB | HB2 | 111.7° | 109.5° |
| CA | CB | HB3 | 111.7° | 109.4° |
| CA | CB | HB2 | 111.7° | 109.5° |
| CB | CA | C | 108.2° | 109.5° |
| CB | CA | HA | 112.7° | 109.5° |
| HB3 | CB | HB2 | 98.7° | 109.4° |
| C | CA | HA | 106.3° | 109.5° |
| CA | C | O | 120.7° | 120.0° |
| CA | C | OXT | 115.8° | 120.0° |
| O | C | OXT | 123.1° | 120.0° |
| C | OXT | HXT | 115.8° | 120.0° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| CA | N | H | H2 | 125.2° | 113.8° |
| N | CA | CB | OD | 35.8° | 60.0° |
| N | CA | CB | C | 126.5° | 120.0° |
| N | CA | CB | HA | 116.3° | 120.0° |
| N | CA | CB | HB3 | 161.0° | 60.0° |
| N | CA | CB | HB2 | 89.5° | 180.0° |
| N | CA | C | HA | 115.8° | 119.9° |
| N | CA | C | O | 27.5° | 30.0° |
| N | CA | C | OXT | 145.2° | 150.0° |
| H | N | CA | CB | 180.0° | 53.7° |
| H | N | CA | C | 57.7° | 173.7° |
| H | N | CA | HA | 58.9° | 66.3° |
| H2 | N | CA | CB | 54.8° | 60.0° |
| H2 | N | CA | C | 177.1° | 60.0° |
| H2 | N | CA | HA | 66.3° | 179.9° |
| OD | CB | CA | HB3 | 125.2° | 120.0° |
| OD | CB | CA | HB2 | 125.3° | 120.0° |
| OD | CB | HB3 | HB2 | 117.6° | 120.0° |
| OD | CB | CA | C | 162.3° | 179.9° |
| OD | CB | CA | HA | 80.5° | 60.0° |
| HD | OD | CB | CA | 179.9° | 180.0° |
| HD | OD | CB | HB3 | 54.7° | 60.0° |
| HD | OD | CB | HB2 | 54.8° | 59.9° |
| CA | CB | HB3 | HB2 | 117.6° | 120.0° |
| CB | CA | C | HA | 121.2° | 120.1° |
| CB | CA | C | O | 95.5° | 90.0° |
| CB | CA | C | OXT | 91.8° | 90.0° |
| HB3 | CB | CA | C | 72.5° | 59.9° |
| HB3 | CB | CA | HA | 44.7° | 180.0° |
| HB2 | CB | CA | C | 37.0° | 60.0° |
| HB2 | CB | CA | HA | 154.2° | 60.0° |
| CA | C | O | OXT | 172.2° | 180.0° |
| CA | C | OXT | HXT | 180.0° | 180.0° |
| HA | CA | C | O | 143.3° | 149.9° |
| HA | CA | C | OXT | 29.4° | 30.1° |
| O | C | OXT | HXT | 7.5° | 0.0° |
