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Summary Geometry Related PDB entries

SE2

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
O8	C8	doub	1.22Å	1.25Å
C8	O1	sing	1.35Å	1.37Å
C8	C7	sing	1.47Å	1.48Å
O1	C11	sing	1.35Å	1.37Å
C11	C10	sing	1.39Å	1.39Å	Aromatic
C11	C4	doub	1.41Å	1.49Å	Aromatic
C10	C1	doub	1.38Å	1.40Å	Aromatic
C1	C2	sing	1.39Å	1.40Å	Aromatic
C2	C3	doub	1.37Å	1.39Å	Aromatic
C3	C4	sing	1.40Å	1.39Å	Aromatic
C4	C5	sing	1.47Å	1.39Å
C5	C7	doub	1.37Å	1.39Å
C7	O11	sing	1.36Å	1.36Å
C10	H10	sing	1.08Å	1.08Å
C1	H1	sing	1.08Å	1.08Å
C2	H2	sing	1.08Å	1.08Å
C3	H3	sing	1.08Å	1.08Å
C5	H5	sing	1.08Å	1.08Å
O11	H11	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O8	C8	O1	120.7°	120.8°
O8	C8	C7	119.1°	120.9°
O1	C8	C7	120.2°	118.3°
C8	O1	C11	120.5°	116.3°
C8	C7	C5	119.8°	117.2°
C8	C7	O11	119.6°	121.4°
O1	C11	C10	121.1°	120.8°
O1	C11	C4	120.1°	119.8°
C10	C11	C4	118.8°	119.5°
C11	C10	C1	119.8°	119.7°
C11	C10	H10	120.1°	120.1°
C11	C4	C3	119.2°	119.9°
C11	C4	C5	119.7°	119.2°
C10	C1	C2	121.5°	120.7°
C1	C10	H10	120.1°	120.2°
C10	C1	H1	119.2°	119.7°
C1	C2	C3	120.7°	120.5°
C2	C1	H1	119.3°	119.7°
C1	C2	H2	119.7°	119.7°
C2	C3	C4	120.0°	119.7°
C3	C2	H2	119.7°	119.7°
C2	C3	H3	120.0°	120.1°
C3	C4	C5	121.1°	120.9°
C4	C3	H3	120.0°	120.1°
C4	C5	C7	119.7°	117.3°
C4	C5	H5	120.1°	121.4°
C5	C7	O11	120.6°	121.5°
C7	C5	H5	120.1°	121.3°
C7	O11	H11	109.5°	114.0°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O8	C8	O1	C7	179.9°	179.7°
O8	C8	O1	C11	179.6°	138.5°
O8	C8	C7	C5	179.8°	152.3°
O8	C8	C7	O11	0.0°	27.5°
C8	O1	C11	C10	180.0°	152.3°
C8	O1	C11	C4	0.3°	27.7°
O1	C8	C7	C5	0.1°	28.0°
O1	C8	C7	O11	179.9°	152.2°
C7	C8	O1	C11	0.3°	41.8°
C8	C7	C5	C4	0.1°	0.5°
C8	C7	C5	O11	179.8°	179.8°
C8	C7	C5	H5	179.9°	179.8°
C8	C7	O11	H11	0.0°	0.0°
O1	C11	C10	C4	179.7°	179.9°
O1	C11	C10	C1	179.7°	179.7°
O1	C11	C4	C3	179.8°	179.6°
O1	C11	C4	C5	0.1°	0.6°
O1	C11	C10	H10	0.3°	0.3°
C11	C10	C1	H10	180.0°	180.0°
C11	C10	C1	C2	0.0°	0.0°
C10	C11	C4	C3	0.1°	0.4°
C10	C11	C4	C5	179.8°	179.5°
C11	C10	C1	H1	180.0°	180.0°
C4	C11	C10	C1	0.1°	0.2°
C11	C4	C3	C2	0.1°	0.2°
C11	C4	C3	C5	179.9°	179.9°
C11	C4	C5	C7	0.1°	12.7°
C4	C11	C10	H10	180.0°	179.8°
C11	C4	C3	H3	179.9°	179.7°
C11	C4	C5	H5	179.9°	167.0°
C10	C1	C2	H1	180.0°	180.0°
C10	C1	C2	C3	0.1°	0.2°
C10	C1	C2	H2	180.0°	179.9°
C1	C2	C3	H2	180.0°	179.9°
C1	C2	C3	C4	0.0°	0.1°
C2	C1	C10	H10	180.0°	179.9°
C1	C2	C3	H3	180.0°	180.0°
C2	C3	C4	H3	180.0°	179.9°
C2	C3	C4	C5	179.8°	179.7°
C3	C2	C1	H1	179.9°	179.8°
C3	C4	C5	C7	180.0°	167.1°
C4	C3	C2	H2	180.0°	180.0°
C3	C4	C5	H5	0.0°	13.1°
C4	C5	C7	H5	180.0°	179.7°
C4	C5	C7	O11	179.7°	179.7°
C5	C4	C3	H3	0.2°	0.4°
C5	C7	O11	H11	179.8°	179.8°
O11	C7	C5	H5	0.3°	0.1°
H10	C10	C1	H1	0.0°	0.1°
H1	C1	C2	H2	0.0°	0.1°
H2	C2	C3	H3	0.0°	0.1°

223166

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