SDP
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| N | CA | sing | 1.44Å | 1.46Å | |
| N | H | sing | 1.00Å | 1.02Å | |
| N | H2 | sing | 1.01Å | 1.02Å | |
| CA | CB | sing | 1.52Å | 1.53Å | |
| CA | C | sing | 1.51Å | 1.53Å | |
| CA | HA | sing | 1.10Å | 1.12Å | |
| CB | OG | sing | 1.42Å | 1.41Å | |
| CB | HB2 | sing | 1.10Å | 1.11Å | |
| CB | HB3 | sing | 1.10Å | 1.12Å | |
| OG | P | sing | 1.62Å | 1.58Å | |
| C | O | doub | 1.22Å | 1.23Å | |
| C | OXT | sing | 1.36Å | 61.51Å | |
| C31 | C32 | sing | 1.51Å | 1.52Å | |
| C31 | O1 | sing | 1.42Å | 1.46Å | |
| C31 | H311 | sing | 1.09Å | 1.12Å | |
| C31 | H312 | sing | 1.09Å | 1.12Å | |
| C32 | H321 | sing | 1.09Å | 1.12Å | |
| C32 | H322 | sing | 1.10Å | 1.11Å | |
| C32 | H323 | sing | 1.10Å | 1.11Å | |
| C41 | C42 | sing | 1.51Å | 1.54Å | |
| C41 | O2 | sing | 1.42Å | 1.43Å | |
| C41 | H411 | sing | 1.09Å | 1.12Å | |
| C41 | H412 | sing | 1.09Å | 1.12Å | |
| C42 | H421 | sing | 1.09Å | 1.11Å | |
| C42 | H422 | sing | 1.10Å | 1.11Å | |
| C42 | H423 | sing | 1.10Å | 1.11Å | |
| O1 | P | sing | 1.62Å | 1.64Å | |
| O2 | P | sing | 1.62Å | 1.64Å | |
| O3 | P | doub | 1.50Å | 1.47Å | |
| OXT | HXT | sing | 0.98Å | 0.00Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| CA | N | H | 110.8° | 119.0° |
| CA | N | H2 | 111.8° | 118.9° |
| N | CA | CB | 110.7° | 111.7° |
| N | CA | C | 115.5° | 107.3° |
| N | CA | HA | 104.0° | 105.4° |
| H | N | H2 | 111.7° | 120.7° |
| CB | CA | C | 108.8° | 110.5° |
| CB | CA | HA | 111.5° | 111.8° |
| CA | CB | OG | 108.9° | 109.2° |
| CA | CB | HB2 | 112.4° | 111.0° |
| CA | CB | HB3 | 112.4° | 111.6° |
| C | CA | HA | 106.2° | 110.0° |
| CA | C | O | 119.6° | 125.2° |
| CA | C | OXT | 56.0° | 111.9° |
| OG | CB | HB2 | 112.4° | 107.8° |
| OG | CB | HB3 | 112.4° | 108.7° |
| CB | OG | P | 125.0° | 120.1° |
| HB2 | CB | HB3 | 98.0° | 108.4° |
| OG | P | O1 | 110.4° | 104.5° |
| OG | P | O2 | 108.5° | 104.5° |
| OG | P | O3 | 108.5° | 114.4° |
| O | C | OXT | 114.0° | 122.9° |
| C | OXT | HXT | 90.0° | 115.2° |
| C32 | C31 | O1 | 109.2° | 109.0° |
| C32 | C31 | H311 | 112.3° | 110.5° |
| C32 | C31 | H312 | 112.3° | 110.6° |
| C31 | C32 | H321 | 109.2° | 110.9° |
| C31 | C32 | H322 | 112.3° | 110.6° |
| C31 | C32 | H323 | 112.3° | 110.6° |
| O1 | C31 | H311 | 112.3° | 108.8° |
| O1 | C31 | H312 | 112.3° | 108.8° |
| C31 | O1 | P | 125.3° | 118.5° |
| H311 | C31 | H312 | 98.0° | 109.1° |
| H321 | C32 | H322 | 112.3° | 108.9° |
| H321 | C32 | H323 | 112.3° | 108.9° |
| H322 | C32 | H323 | 98.2° | 106.9° |
| C42 | C41 | O2 | 104.1° | 109.0° |
| C42 | C41 | H411 | 114.3° | 110.6° |
| C42 | C41 | H412 | 114.3° | 110.6° |
| C41 | C42 | H421 | 104.1° | 110.9° |
| C41 | C42 | H422 | 114.2° | 110.6° |
| C41 | C42 | H423 | 114.3° | 110.7° |
| O2 | C41 | H411 | 114.2° | 108.8° |
| O2 | C41 | H412 | 114.2° | 108.8° |
| C41 | O2 | P | 126.7° | 118.4° |
| H411 | C41 | H412 | 96.2° | 109.2° |
| H421 | C42 | H422 | 114.3° | 108.8° |
| H421 | C42 | H423 | 114.3° | 108.8° |
| H422 | C42 | H423 | 96.3° | 106.9° |
| O1 | P | O2 | 111.0° | 102.9° |
| O1 | P | O3 | 106.2° | 114.6° |
| O2 | P | O3 | 112.2° | 114.6° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| CA | N | H | H2 | 125.3° | 166.3° |
| N | CA | CB | C | 128.0° | 119.4° |
| N | CA | CB | HA | 115.3° | 117.7° |
| N | CA | C | HA | 114.7° | 114.1° |
| N | CA | CB | OG | 59.1° | 178.1° |
| N | CA | CB | HB2 | 175.6° | 59.4° |
| N | CA | CB | HB3 | 66.1° | 61.7° |
| N | CA | C | O | 150.8° | 35.8° |
| N | CA | C | OXT | 50.4° | 146.4° |
| H | N | CA | CB | 180.0° | 110.1° |
| H | N | CA | C | 55.8° | 11.2° |
| H | N | CA | HA | 60.1° | 128.4° |
| H2 | N | CA | CB | 54.7° | 83.4° |
| H2 | N | CA | C | 179.0° | 155.3° |
| H2 | N | CA | HA | 65.1° | 38.1° |
| CB | CA | C | HA | 120.1° | 123.9° |
| CA | CB | OG | HB2 | 125.3° | 120.7° |
| CA | CB | OG | HB3 | 125.2° | 121.9° |
| CA | CB | HB2 | HB3 | 118.3° | 122.9° |
| CA | CB | OG | P | 114.2° | 180.0° |
| CB | CA | C | O | 84.0° | 86.1° |
| CB | CA | C | OXT | 175.7° | 91.7° |
| C | CA | CB | OG | 68.9° | 58.8° |
| C | CA | CB | HB2 | 56.4° | 60.0° |
| C | CA | CB | HB3 | 165.9° | 178.9° |
| CA | C | O | OXT | 63.1° | 177.6° |
| CA | C | OXT | HXT | 90.0° | 177.8° |
| HA | CA | CB | OG | 174.4° | 64.1° |
| HA | CA | CB | HB2 | 60.3° | 177.1° |
| HA | CA | CB | HB3 | 49.2° | 56.1° |
| HA | CA | C | O | 36.1° | 150.0° |
| HA | CA | C | OXT | 64.3° | 32.3° |
| OG | CB | HB2 | HB3 | 118.3° | 117.5° |
| CB | OG | P | O1 | 176.5° | 53.9° |
| CB | OG | P | O2 | 61.7° | 53.9° |
| CB | OG | P | O3 | 60.5° | 180.0° |
| HB2 | CB | OG | P | 120.5° | 59.3° |
| HB3 | CB | OG | P | 11.0° | 58.0° |
| OG | P | O1 | C31 | 89.8° | 66.0° |
| OG | P | O2 | C41 | 160.2° | 66.0° |
| OG | P | O1 | O2 | 120.4° | 108.9° |
| OG | P | O1 | O3 | 117.4° | 126.0° |
| OG | P | O2 | O3 | 119.8° | 126.0° |
| O | C | OXT | HXT | 90.0° | 0.1° |
| C32 | C31 | O1 | H311 | 125.3° | 120.6° |
| C32 | C31 | O1 | H312 | 125.3° | 120.7° |
| C32 | C31 | H311 | H312 | 118.2° | 121.8° |
| C31 | C32 | H321 | H322 | 125.3° | 121.9° |
| C31 | C32 | H321 | H323 | 125.2° | 121.9° |
| C31 | C32 | H322 | H323 | 118.2° | 120.5° |
| C32 | C31 | O1 | P | 170.5° | 180.0° |
| O1 | C31 | H311 | H312 | 118.2° | 118.5° |
| O1 | C31 | C32 | H321 | 180.0° | 180.0° |
| O1 | C31 | C32 | H322 | 54.7° | 59.1° |
| O1 | C31 | C32 | H323 | 54.8° | 59.1° |
| C31 | O1 | P | O2 | 149.9° | 174.9° |
| C31 | O1 | P | O3 | 27.6° | 60.0° |
| H311 | C31 | C32 | H321 | 54.7° | 60.5° |
| H311 | C31 | C32 | H322 | 70.6° | 178.7° |
| H311 | C31 | C32 | H323 | 179.9° | 60.4° |
| H311 | C31 | O1 | P | 45.2° | 59.4° |
| H312 | C31 | C32 | H321 | 54.7° | 60.4° |
| H312 | C31 | C32 | H322 | 180.0° | 60.4° |
| H312 | C31 | C32 | H323 | 70.5° | 178.7° |
| H312 | C31 | O1 | P | 64.2° | 59.3° |
| H321 | C32 | H322 | H323 | 118.2° | 117.4° |
| C42 | C41 | O2 | H411 | 125.3° | 120.6° |
| C42 | C41 | O2 | H412 | 125.3° | 120.6° |
| C42 | C41 | H411 | H412 | 120.2° | 121.8° |
| C41 | C42 | H421 | H422 | 125.2° | 121.9° |
| C41 | C42 | H421 | H423 | 125.3° | 122.0° |
| C41 | C42 | H422 | H423 | 120.2° | 120.6° |
| C42 | C41 | O2 | P | 132.8° | 180.0° |
| O2 | C41 | H411 | H412 | 120.1° | 118.6° |
| O2 | C41 | C42 | H421 | 180.0° | 180.0° |
| O2 | C41 | C42 | H422 | 54.7° | 59.2° |
| O2 | C41 | C42 | H423 | 54.7° | 59.1° |
| C41 | O2 | P | O1 | 78.3° | 174.9° |
| C41 | O2 | P | O3 | 40.4° | 60.0° |
| H411 | C41 | C42 | H421 | 54.7° | 60.5° |
| H411 | C41 | C42 | H422 | 70.5° | 178.6° |
| H411 | C41 | C42 | H423 | 180.0° | 60.4° |
| H411 | C41 | O2 | P | 7.5° | 59.4° |
| H412 | C41 | C42 | H421 | 54.8° | 60.5° |
| H412 | C41 | C42 | H422 | 180.0° | 60.3° |
| H412 | C41 | C42 | H423 | 70.5° | 178.6° |
| H412 | C41 | O2 | P | 101.9° | 59.4° |
| H421 | C42 | H422 | H423 | 120.2° | 117.3° |
| O1 | P | O2 | O3 | 118.7° | 125.1° |
