Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

SDO

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
P24O26sing1.61Å1.55Å
P24O23sing1.61Å1.55Å
P24O27sing1.61Å1.55Å
O27C28sing1.43Å1.46Å
C28C29sing1.53Å1.54Å
C29C30sing1.53Å1.51Å
C29C31sing1.53Å1.53Å
C29C32sing1.53Å1.59Å
C32O33sing1.43Å1.43Å
C32C34sing1.51Å1.54Å
C34O35doub1.21Å1.24Å
C34N36sing1.35Å1.31Å
N36C37sing1.46Å1.46Å
C37C38sing1.53Å1.54Å
C38C39sing1.51Å1.54Å
C39O40doub1.21Å1.23Å
C39N41sing1.35Å1.33Å
N41C42sing1.46Å1.45Å
C42C43sing1.53Å1.51Å
C43S1sing1.81Å1.82Å
S1C1sing1.81Å1.82Å
C1C2sing1.53Å1.52Å
C2C3sing1.51Å1.59Å
C3O3doub1.21Å1.23Å
C3C4sing1.51Å1.59Å
C4C5sing1.53Å1.53Å
C5C6sing1.53Å1.54Å
C6C7sing1.51Å1.55Å
C7O7doub1.21Å1.23Å
C7C8sing1.51Å1.52Å
O26H1sing0.97Å0.95Å
O23H2sing0.97Å0.95Å
C28H28Asing1.09Å1.10Å
C28H28Bsing1.09Å1.10Å
C30H30Asing1.09Å1.10Å
C30H30Bsing1.09Å1.10Å
C30H30Csing1.09Å1.10Å
C31H31Asing1.09Å1.10Å
C31H31Bsing1.09Å1.10Å
C31H31Csing1.09Å1.10Å
C32H32Asing1.09Å1.10Å
O33H33Asing0.97Å0.95Å
N36H36Asing0.97Å1.00Å
C37H37Asing1.09Å1.10Å
C37H37Bsing1.09Å1.10Å
C38H38Asing1.09Å1.10Å
C38H38Bsing1.09Å1.10Å
N41H41Asing0.97Å1.00Å
C42H42Asing1.09Å1.10Å
C42H42Bsing1.09Å1.10Å
C43H43Asing1.09Å1.10Å
C43H43Bsing1.09Å1.10Å
C1H1Asing1.09Å1.10Å
C1H1Bsing1.09Å1.10Å
C2H2Asing1.09Å1.10Å
C2H2Bsing1.09Å1.10Å
C4H4Asing1.09Å1.10Å
C4H4Bsing1.09Å1.10Å
C5H5Asing1.09Å1.10Å
C5H5Bsing1.09Å1.10Å
C6H6Asing1.09Å1.10Å
C6H6Bsing1.09Å1.10Å
C8H8Asing1.09Å1.10Å
C8H8Bsing1.09Å1.10Å
C8H8Csing1.09Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O26P24O23117.8°102.0°
O26P24O27108.1°102.0°
P24O26H1109.5°114.1°
O23P24O27107.7°102.0°
P24O23H2109.5°114.0°
P24O27C28118.3°123.0°
O27C28C29111.2°109.5°
O27C28H28A109.0°109.5°
O27C28H28B109.0°109.4°
C28C29C30107.2°109.5°
C28C29C31109.1°109.5°
C28C29C32112.9°109.4°
C29C28H28A109.1°109.5°
C29C28H28B109.0°109.4°
C30C29C31109.4°109.5°
C30C29C32109.8°109.4°
C29C30H30A109.5°109.5°
C29C30H30B109.5°109.5°
C29C30H30C109.5°109.5°
C31C29C32108.4°109.5°
C29C31H31A109.5°109.5°
C29C31H31B109.5°109.4°
C29C31H31C109.5°109.5°
C29C32O33109.3°109.5°
C29C32C34113.0°109.5°
C29C32H32A108.3°109.5°
O33C32C34106.7°109.4°
O33C32H32A110.5°109.5°
C32O33H33A109.5°114.0°
C32C34O35119.4°120.0°
C32C34N36118.4°120.0°
C34C32H32A109.0°109.5°
O35C34N36122.2°120.0°
C34N36C37124.1°120.0°
C34N36H36A117.9°120.0°
N36C37C38113.4°109.5°
C37N36H36A117.9°120.0°
N36C37H37A108.5°109.5°
N36C37H37B108.5°109.5°
C37C38C39114.8°109.5°
C38C37H37A108.5°109.5°
C38C37H37B108.5°109.5°
C37C38H38A108.1°109.4°
C37C38H38B108.1°109.4°
C38C39O40121.1°120.0°
C38C39N41116.1°120.0°
C39C38H38A108.1°109.5°
C39C38H38B108.1°109.6°
O40C39N41122.9°120.0°
C39N41C42123.7°120.0°
C39N41H41A118.1°120.0°
N41C42C43112.4°109.5°
C42N41H41A118.1°120.0°
N41C42H42A108.7°109.5°
N41C42H42B108.8°109.5°
C42C43S1119.2°109.5°
C43C42H42A108.7°109.5°
C43C42H42B108.7°109.5°
C42C43H43A107.0°109.4°
C42C43H43B107.0°109.5°
C43S1C1116.6°103.0°
S1C43H43A107.0°109.5°
S1C43H43B107.0°109.5°
S1C1C2119.0°109.5°
S1C1H1A107.1°109.5°
S1C1H1B107.0°109.5°
C1C2C3120.0°109.5°
C2C1H1A107.0°109.4°
C2C1H1B107.0°109.5°
C1C2H2A106.8°109.5°
C1C2H2B106.8°109.5°
C2C3O3116.1°120.0°
C2C3C4127.3°120.0°
C3C2H2A106.7°109.5°
C3C2H2B106.8°109.4°
O3C3C4116.6°120.0°
C3C4C5119.8°109.5°
C3C4H4A106.8°109.4°
C3C4H4B106.8°109.4°
C4C5C6112.9°109.5°
C5C4H4A106.8°109.5°
C5C4H4B106.8°109.5°
C4C5H5A108.6°109.5°
C4C5H5B108.6°109.5°
C5C6C7117.1°109.5°
C6C5H5A108.6°109.4°
C6C5H5B108.6°109.5°
C5C6H6A107.5°109.4°
C5C6H6B107.5°109.5°
C6C7O7119.7°120.0°
C6C7C8120.4°120.0°
C7C6H6A107.6°109.5°
C7C6H6B107.6°109.4°
O7C7C8119.9°120.0°
C7C8H8A109.5°109.4°
C7C8H8B109.5°109.5°
C7C8H8C109.5°109.5°
H28AC28H28B109.5°109.5°
H30AC30H30B109.5°109.4°
H30AC30H30C109.5°109.4°
H30BC30H30C109.5°109.5°
H31AC31H31B109.5°109.5°
H31AC31H31C109.5°109.5°
H31BC31H31C109.5°109.5°
H37AC37H37B109.5°109.4°
H38AC38H38B109.5°109.4°
H42AC42H42B109.4°109.4°
H43AC43H43B109.5°109.4°
H1AC1H1B109.5°109.5°
H2AC2H2B109.4°109.4°
H4AC4H4B109.5°109.5°
H5AC5H5B109.5°109.5°
H6AC6H6B109.4°109.5°
H8AC8H8B109.5°109.4°
H8AC8H8C109.5°109.5°
H8BC8H8C109.4°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O26P24O23O27122.5°105.3°
O26P24O27C2856.1°89.7°
O26P24O23H2180.0°74.7°
O23P24O27C28175.7°165.0°
O23P24O26H1180.0°180.0°
P24O27C28C29172.2°180.0°
O27P24O26H157.8°74.8°
O27P24O23H257.5°180.0°
P24O27C28H28A67.5°59.9°
P24O27C28H28B52.0°60.1°
O27C28C29H28A120.3°120.0°
O27C28C29H28B120.3°119.9°
O27C28C29C30178.1°60.0°
O27C28C29C3163.5°60.1°
O27C28C29C3257.1°180.0°
O27C28H28AH28B119.2°120.0°
C28C29C30C31118.2°120.0°
C28C29C30C32123.0°120.0°
C28C29C31C32123.3°120.0°
C28C29C32O33179.0°65.5°
C28C29C32C3462.3°54.4°
C29C28H28AH28B119.2°120.0°
C28C29C30H30A180.0°57.1°
C28C29C30H30B60.0°177.0°
C28C29C30H30C60.0°62.9°
C28C29C31H31A180.0°52.8°
C28C29C31H31B60.0°172.8°
C28C29C31H31C60.0°67.2°
C28C29C32H32A58.5°174.4°
C30C29C31C32119.7°120.0°
C30C29C32O3361.4°54.5°
C30C29C32C3457.3°174.5°
C30C29C28H28A57.9°180.0°
C30C29C28H28B61.6°59.9°
C29C30H30AH30B120.0°120.0°
C29C30H30AH30C120.0°120.0°
C29C30H30BH30C120.0°120.1°
C30C29C31H31A63.0°172.8°
C30C29C31H31B57.0°67.2°
C30C29C31H31C177.0°52.9°
C30C29C32H32A178.1°65.5°
C31C29C32O3358.0°174.5°
C31C29C32C34176.7°65.5°
C31C29C28H28A176.2°60.0°
C31C29C28H28B56.7°180.0°
C31C29C30H30A61.8°62.9°
C31C29C30H30B178.2°57.0°
C31C29C30H30C58.2°177.1°
C29C31H31AH31B120.0°120.0°
C29C31H31AH31C120.0°120.0°
C29C31H31BH31C120.0°120.0°
C31C29C32H32A62.5°54.5°
C29C32O33C34122.6°120.0°
C29C32O33H32A119.1°120.0°
C29C32C34H32A120.5°120.0°
C29C32C34O35114.2°107.8°
C29C32C34N3665.2°72.2°
C32C29C28H28A63.2°60.0°
C32C29C28H28B177.3°60.1°
C32C29C30H30A57.0°177.1°
C32C29C30H30B63.0°63.0°
C32C29C30H30C177.0°57.1°
C32C29C31H31A56.7°67.2°
C32C29C31H31B176.7°52.8°
C32C29C31H31C63.3°172.8°
C29C32O33H33A119.8°59.9°
O33C32C34H32A119.3°120.0°
O33C32C34O356.0°12.2°
O33C32C34N36174.6°167.8°
C32C34O35N36179.4°180.0°
C32C34N36C37179.8°174.9°
C34C32O33H33A2.7°60.1°
C32C34N36H36A0.1°5.1°
O35C34N36C370.8°5.1°
O35C34C32H32A125.3°132.2°
O35C34N36H36A179.3°174.9°
C34N36C37H36A180.0°180.0°
C34N36C37C38134.9°180.0°
N36C34C32H32A55.3°47.8°
C34N36C37H37A14.3°60.0°
C34N36C37H37B104.6°60.0°
N36C37C38H37A120.5°120.1°
N36C37C38H37B120.6°120.0°
N36C37C38C3977.3°180.0°
N36C37H37AH37B118.2°120.0°
N36C37C38H38A162.0°60.0°
N36C37C38H38B43.5°59.9°
C37C38C39H38A120.8°120.0°
C37C38C39H38B120.8°120.0°
C37C38C39O40178.2°0.0°
C37C38C39N411.8°180.0°
C38C37N36H36A45.2°0.0°
C38C37H37AH37B118.2°120.0°
C37C38H38AH38B117.6°119.9°
C38C39O40N41179.9°180.0°
C38C39N41C42180.0°179.9°
C39C38C37H37A43.3°60.0°
C39C38C37H37B162.2°59.9°
C39C38H38AH38B117.6°120.1°
C38C39N41H41A0.0°0.0°
O40C39N41C420.0°0.0°
O40C39C38H38A61.1°120.0°
O40C39C38H38B57.4°120.0°
O40C39N41H41A180.0°180.0°
C39N41C42H41A180.0°180.0°
C39N41C42C43172.9°180.0°
N41C39C38H38A119.0°60.1°
N41C39C38H38B122.5°60.0°
C39N41C42H42A52.4°60.0°
C39N41C42H42B66.7°60.0°
N41C42C43H42A120.4°120.0°
N41C42C43H42B120.5°120.0°
N41C42C43S1166.0°180.0°
N41C42H42AH42B118.7°120.0°
N41C42C43H43A44.6°60.0°
N41C42C43H43B72.6°60.0°
C42C43S1H43A121.4°120.0°
C42C43S1H43B121.4°120.1°
C42C43S1C10.2°180.0°
C43C42N41H41A7.1°0.0°
C43C42H42AH42B118.6°120.0°
C42C43H43AH43B115.6°120.0°
C43S1C1C20.0°180.0°
S1C43C42H42A73.5°60.0°
S1C43C42H42B45.6°60.0°
S1C43H43AH43B115.6°120.0°
C43S1C1H1A121.3°60.0°
C43S1C1H1B121.4°59.9°
S1C1C2H1A121.3°120.0°
S1C1C2H1B121.3°120.0°
S1C1C2C3179.9°180.0°
C1S1C43H43A121.2°60.0°
C1S1C43H43B121.5°59.9°
S1C1H1AH1B115.7°120.0°
S1C1C2H2A58.6°60.0°
S1C1C2H2B58.4°60.0°
C1C2C3H2A121.5°120.0°
C1C2C3H2B121.5°120.0°
C1C2C3O3179.3°0.0°
C1C2C3C40.2°180.0°
C2C1H1AH1B115.7°120.0°
C1C2H2AH2B115.3°120.0°
C2C3O3C4179.2°179.9°
C2C3C4C50.0°180.0°
C3C2C1H1A58.6°60.0°
C3C2C1H1B58.7°60.0°
C3C2H2AH2B115.2°119.9°
C2C3C4H4A121.4°59.9°
C2C3C4H4B121.5°60.0°
O3C3C4C5179.1°0.0°
O3C3C2H2A59.2°120.0°
O3C3C2H2B57.8°120.1°
O3C3C4H4A59.5°120.0°
O3C3C4H4B57.6°120.1°
C3C4C5H4A121.5°120.0°
C3C4C5H4B121.5°120.0°
C3C4C5C6170.2°180.0°
C4C3C2H2A121.7°59.9°
C4C3C2H2B121.3°60.0°
C3C4H4AH4B115.3°119.9°
C3C4C5H5A49.7°60.0°
C3C4C5H5B69.3°60.0°
C4C5C6H5A120.5°120.0°
C4C5C6H5B120.5°120.1°
C4C5C6C772.7°180.0°
C5C4H4AH4B115.3°120.0°
C4C5H5AH5B118.5°120.0°
C4C5C6H6A48.5°60.0°
C4C5C6H6B166.2°60.0°
C5C6C7H6A121.1°120.0°
C5C6C7H6B121.1°120.0°
C5C6C7O7179.6°0.0°
C5C6C7C80.2°180.0°
C6C5C4H4A68.3°60.1°
C6C5C4H4B48.7°60.0°
C6C5H5AH5B118.4°120.0°
C5C6H6AH6B116.5°120.0°
C6C7O7C8179.8°179.9°
C7C6C5H5A166.8°60.0°
C7C6C5H5B47.8°60.0°
C7C6H6AH6B116.6°120.0°
C6C7C8H8A179.8°90.1°
C6C7C8H8B60.2°150.0°
C6C7C8H8C59.8°30.0°
O7C7C6H6A58.5°120.0°
O7C7C6H6B59.3°120.0°
O7C7C8H8A0.0°90.0°
O7C7C8H8B120.0°30.0°
O7C7C8H8C120.0°150.0°
C8C7C6H6A121.3°60.0°
C8C7C6H6B120.9°60.1°
C7C8H8AH8B120.0°120.0°
C7C8H8AH8C120.0°120.0°
C7C8H8BH8C120.0°120.1°
H30AC30H30BH30C120.0°120.0°
H31AC31H31BH31C120.0°120.0°
H32AC32O33H33A121.0°180.0°
H36AN36C37H37A165.7°120.0°
H36AN36C37H37B75.4°120.0°
H37AC37C38H38A77.5°180.0°
H37AC37C38H38B164.1°60.1°
H37BC37C38H38A41.4°60.0°
H37BC37C38H38B77.0°180.0°
H41AN41C42H42A127.6°120.0°
H41AN41C42H42B113.3°120.0°
H42AC42C43H43A165.1°180.0°
H42AC42C43H43B47.8°60.1°
H42BC42C43H43A75.8°60.0°
H42BC42C43H43B166.9°180.0°
H1AC1C2H2A180.0°180.0°
H1AC1C2H2B62.9°60.0°
H1BC1C2H2A62.7°60.1°
H1BC1C2H2B179.8°180.0°
H4AC4C5H5A171.2°180.0°
H4AC4C5H5B52.2°60.0°
H4BC4C5H5A71.8°60.0°
H4BC4C5H5B169.2°180.0°
H5AC5C6H6A72.1°180.0°
H5AC5C6H6B45.7°60.0°
H5BC5C6H6A168.9°60.1°
H5BC5C6H6B73.3°179.9°
H8AC8H8BH8C120.0°120.0°

238582

PDB entries from 2025-07-09

PDB statisticsPDBj update infoContact PDBjnumon