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SummaryGeometryRelated PDB entries

SDC

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
O01C04sing1.34Å1.20Å
O01H01sing0.97Å0.95Å
NP2C03sing1.47Å1.50Å
NP2HP21sing1.01Å1.00Å
NP2HP22sing1.01Å1.00Å
C03C04sing1.51Å1.55Å
C03C06sing1.53Å1.53Å
C03H03sing1.09Å1.10Å
C04O05doub1.21Å1.35Å
C06S07sing1.81Å1.81Å
C06H061sing1.09Å1.10Å
C06H062sing1.09Å1.10Å
S07C08sing1.81Å1.84Å
C08C09sing1.53Å1.53Å
C08H081sing1.09Å1.10Å
C08H082sing1.09Å1.10Å
C09S10sing1.81Å1.80Å
C09H091sing1.09Å1.10Å
C09H092sing1.09Å1.10Å
S10O11doub1.42Å1.40Å
S10N12sing1.66Å1.64Å
S10O13doub1.42Å1.44Å
N12H121sing0.97Å1.00Å
N12H122sing0.97Å1.00Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
C04O01H01109.5°117.0°
O01C04C03128.0°120.0°
O01C04O05123.3°120.0°
C03NP2HP21109.5°111.0°
C03NP2HP22109.5°111.0°
NP2C03C04112.2°109.5°
NP2C03C06104.7°109.5°
NP2C03H03112.2°109.5°
HP21NP2HP22109.4°111.0°
C04C03C06113.3°109.5°
C04C03H03103.5°109.5°
C03C04O05108.7°120.0°
C06C03H03111.2°109.4°
C03C06S07107.3°109.5°
C03C06H061110.2°109.4°
C03C06H062110.6°109.5°
S07C06H061110.2°109.5°
S07C06H062110.7°109.5°
C06S07C0898.7°103.0°
H061C06H062107.8°109.5°
S07C08C09105.3°109.5°
S07C08H081110.9°109.5°
S07C08H082111.8°109.5°
C09C08H081110.9°109.4°
C09C08H082111.8°109.5°
C08C09S10111.7°109.5°
C08C09H091108.7°109.4°
C08C09H092108.3°109.5°
H081C08H082106.3°109.4°
S10C09H091108.7°109.5°
S10C09H092108.2°109.5°
C09S10O11113.4°110.5°
C09S10N12104.2°104.5°
C09S10O13114.6°110.5°
H091C09H092111.2°109.4°
O11S10N12106.6°104.3°
O11S10O13118.0°121.1°
N12S10O1397.1°104.2°
S10N12H121109.5°119.9°
S10N12H122109.5°120.0°
H121N12H122109.5°120.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
O01C04C03NP2138.2°160.0°
O01C04C03O05179.4°179.9°
O01C04C03C0619.8°79.9°
O01C04C03H03100.7°40.0°
H01O01C04C03179.4°180.0°
H01O01C04O050.0°0.0°
C03NP2HP21HP22120.0°123.9°
NP2C03C04C06118.3°120.1°
NP2C03C04H03121.2°120.0°
NP2C03C06H03121.4°120.0°
NP2C03C04O0542.4°20.1°
NP2C03C06S07151.8°59.9°
NP2C03C06H06131.7°60.0°
NP2C03C06H06287.4°180.0°
HP21NP2C03C04105.4°63.9°
HP21NP2C03C06131.3°176.0°
HP21NP2C03H0310.6°56.1°
HP22NP2C03C0414.6°60.0°
HP22NP2C03C06108.7°60.1°
HP22NP2C03H03130.6°180.0°
C04C03C06H03116.0°120.0°
C04C03C06S0785.6°180.0°
C04C03C06H061154.4°60.0°
C04C03C06H06235.2°59.9°
C06C03C04O05160.7°100.0°
C03C06S07H061120.0°119.9°
C03C06S07H062120.8°120.1°
C03C06H061H062120.8°120.0°
C03C06S07C08156.7°180.0°
H03C03C04O0578.8°140.0°
H03C03C06S0730.4°60.0°
H03C03C06H06189.6°NaN°
H03C03C06H062151.3°60.0°
S07C06H061H062120.9°120.0°
C06S07C08C09135.1°180.0°
C06S07C08H08115.1°60.0°
C06S07C08H082103.3°60.0°
H061C06S07C0883.2°60.0°
H062C06S07C0835.9°60.0°
S07C08C09H081120.0°120.0°
S07C08C09H082121.6°120.1°
S07C08H081H082121.7°120.1°
S07C08C09S10160.1°180.0°
S07C08C09H09140.1°60.0°
S07C08C09H09280.9°59.9°
C09C08H081H082121.7°119.9°
C08C09S10H091120.0°120.0°
C08C09S10H092119.1°120.0°
C08C09H091H092119.1°119.9°
C08C09S10O11132.7°68.4°
C08C09S10N12111.8°180.0°
C08C09S10O136.9°68.4°
H081C08C09S1079.9°60.0°
H081C08C09H091160.1°180.0°
H081C08C09H09239.1°60.1°
H082C08C09S1038.5°59.9°
H082C08C09H09181.5°60.1°
H082C08C09H092157.5°180.0°
S10C09H091H092119.1°120.1°
C09S10O11N12114.1°111.8°
C09S10O11O13138.1°131.5°
C09S10N12O13117.7°116.1°
C09S10N12H121104.0°0.1°
C09S10N12H12216.0°180.0°
H091C09S10O1112.7°51.6°
H091C09S10N12128.2°60.0°
H091C09S10O13126.9°171.6°
H092C09S10O11108.3°171.6°
H092C09S10N127.2°60.0°
H092C09S10O13112.1°51.6°
O11S10N12O13122.1°127.9°
O11S10N12H12116.2°116.0°
O11S10N12H122136.2°63.9°
S10N12H121H122120.0°179.9°
O13S10N12H121138.3°116.1°
O13S10N12H122101.7°64.0°

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PDB entries from 2024-07-17

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