SDB
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
O | C | doub | 1.21Å | 1.24Å | |
C | CA1 | sing | 1.51Å | 1.57Å | |
C | OXT | sing | 1.34Å | 1.30Å | |
CA1 | CB1 | sing | 1.54Å | 1.53Å | |
CA1 | N1 | sing | 1.47Å | 1.47Å | |
CB1 | CG | sing | 1.53Å | 1.53Å | |
CG | NE | sing | 1.46Å | 1.46Å | |
NE | C1 | doub | 1.28Å | 1.27Å | |
N1 | C1 | sing | 1.37Å | 1.35Å | |
C1 | CA | sing | 1.51Å | 1.54Å | |
CA | N | sing | 1.47Å | 1.49Å | |
CA | CB | sing | 1.53Å | 1.53Å | |
CB | OG | sing | 1.43Å | 1.45Å | |
CA1 | HA1 | sing | 1.09Å | 1.10Å | |
OXT | HOT | sing | 0.97Å | 0.95Å | |
CB1 | HB11 | sing | 1.09Å | 1.10Å | |
CB1 | HB12 | sing | 1.09Å | 1.10Å | |
N1 | H1 | sing | 0.97Å | 1.00Å | |
CG | HG1C | sing | 1.09Å | 1.10Å | |
CG | HG2C | sing | 1.09Å | 1.10Å | |
CA | HA | sing | 1.09Å | 1.10Å | |
N | HN1 | sing | 1.01Å | 1.00Å | |
N | HN2 | sing | 1.01Å | 1.00Å | |
CB | HB1C | sing | 1.09Å | 1.10Å | |
CB | HB2C | sing | 1.09Å | 1.10Å | |
OG | HG | sing | 0.97Å | 0.95Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
O | C | CA1 | 113.4° | 120.0° |
O | C | OXT | 99.3° | 120.0° |
CA1 | C | OXT | 140.2° | 120.0° |
C | CA1 | CB1 | 117.4° | 109.9° |
C | CA1 | N1 | 115.4° | 109.8° |
C | CA1 | HA1 | 98.7° | 109.9° |
C | OXT | HOT | 109.5° | 117.0° |
CB1 | CA1 | N1 | 110.1° | 107.3° |
CA1 | CB1 | CG | 108.3° | 108.4° |
CB1 | CA1 | HA1 | 105.6° | 109.9° |
CA1 | CB1 | HB11 | 109.9° | 109.7° |
CA1 | CB1 | HB12 | 110.1° | 109.7° |
CA1 | N1 | C1 | 120.1° | 118.7° |
N1 | CA1 | HA1 | 108.1° | 109.9° |
CA1 | N1 | H1 | 119.9° | 120.6° |
CB1 | CG | NE | 103.3° | 110.6° |
CG | CB1 | HB11 | 109.9° | 109.7° |
CG | CB1 | HB12 | 110.1° | 109.7° |
CB1 | CG | HG1C | 111.6° | 109.3° |
CB1 | CG | HG2C | 112.9° | 109.3° |
CG | NE | C1 | 125.3° | 123.9° |
NE | CG | HG1C | 111.6° | 109.2° |
NE | CG | HG2C | 112.9° | 109.2° |
NE | C1 | N1 | 116.8° | 122.5° |
NE | C1 | CA | 123.6° | 118.7° |
N1 | C1 | CA | 119.6° | 118.8° |
C1 | N1 | H1 | 119.9° | 120.6° |
C1 | CA | N | 125.1° | 109.5° |
C1 | CA | CB | 109.4° | 109.5° |
C1 | CA | HA | 96.1° | 109.5° |
N | CA | CB | 101.9° | 109.4° |
N | CA | HA | 104.5° | 109.5° |
CA | N | HN1 | 109.5° | 111.0° |
CA | N | HN2 | 109.5° | 110.9° |
CA | CB | OG | 105.5° | 109.5° |
CB | CA | HA | 121.7° | 109.5° |
CA | CB | HB1C | 110.8° | 109.4° |
CA | CB | HB2C | 111.7° | 109.5° |
OG | CB | HB1C | 110.8° | 109.5° |
OG | CB | HB2C | 111.6° | 109.5° |
CB | OG | HG | 109.5° | 114.0° |
HB11 | CB1 | HB12 | 108.5° | 109.7° |
HG1C | CG | HG2C | 104.8° | 109.2° |
HN1 | N | HN2 | 109.5° | 111.0° |
HB1C | CB | HB2C | 106.5° | 109.5° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
O | C | CA1 | OXT | 142.5° | 179.7° |
O | C | CA1 | CB1 | 57.4° | 100.0° |
O | C | CA1 | N1 | 75.0° | 17.9° |
O | C | CA1 | HA1 | 170.1° | 138.9° |
O | C | OXT | HOT | 0.0° | 0.1° |
C | CA1 | CB1 | N1 | 134.8° | 119.4° |
C | CA1 | CB1 | HA1 | 108.8° | 121.1° |
C | CA1 | N1 | HA1 | 109.4° | 121.1° |
C | CA1 | CB1 | CG | 179.4° | 178.5° |
C | CA1 | N1 | C1 | 131.5° | 161.6° |
CA1 | C | OXT | HOT | 145.5° | 179.8° |
C | CA1 | CB1 | HB11 | 59.3° | 58.7° |
C | CA1 | CB1 | HB12 | 60.2° | 61.8° |
C | CA1 | N1 | H1 | 48.5° | 18.5° |
OXT | C | CA1 | CB1 | 85.1° | 79.7° |
OXT | C | CA1 | N1 | 142.5° | 162.4° |
OXT | C | CA1 | HA1 | 27.6° | 41.3° |
CB1 | CA1 | N1 | HA1 | 114.9° | 119.5° |
CA1 | CB1 | CG | HB11 | 120.0° | 119.8° |
CA1 | CB1 | CG | HB12 | 120.5° | 119.7° |
CA1 | CB1 | CG | NE | 61.6° | 49.1° |
CB1 | CA1 | N1 | C1 | 4.3° | 42.1° |
CA1 | CB1 | HB11 | HB12 | 120.4° | 120.5° |
CB1 | CA1 | N1 | H1 | 175.8° | 137.9° |
CA1 | CB1 | CG | HG1C | 178.4° | 169.4° |
CA1 | CB1 | CG | HG2C | 60.7° | 71.2° |
N1 | CA1 | CB1 | CG | 44.6° | 59.1° |
CA1 | N1 | C1 | NE | 35.6° | 12.6° |
CA1 | N1 | C1 | H1 | 180.0° | 179.9° |
CA1 | N1 | C1 | CA | 144.5° | 167.3° |
N1 | CA1 | CB1 | HB11 | 75.5° | 60.7° |
N1 | CA1 | CB1 | HB12 | 165.1° | 178.8° |
CB1 | CG | NE | HG1C | 120.0° | 120.3° |
CB1 | CG | NE | HG2C | 122.2° | 120.3° |
CB1 | CG | NE | C1 | 35.5° | 20.4° |
CG | CB1 | CA1 | HA1 | 71.9° | 60.4° |
CG | CB1 | HB11 | HB12 | 120.5° | 120.6° |
CB1 | CG | HG1C | HG2C | 122.5° | 119.5° |
CG | NE | C1 | N1 | 13.3° | 0.5° |
CG | NE | C1 | CA | 166.9° | 179.4° |
NE | CG | CB1 | HB11 | 58.4° | 70.7° |
NE | CG | CB1 | HB12 | 177.9° | 168.8° |
NE | CG | HG1C | HG2C | 122.5° | 119.4° |
NE | C1 | N1 | CA | 179.8° | 180.0° |
NE | C1 | CA | N | 1.6° | 155.1° |
NE | C1 | CA | CB | 119.3° | 85.0° |
NE | C1 | N1 | H1 | 144.4° | 167.4° |
C1 | NE | CG | HG1C | 155.5° | 140.7° |
C1 | NE | CG | HG2C | 86.7° | 99.9° |
NE | C1 | CA | HA | 114.0° | 35.1° |
N1 | C1 | CA | N | 178.2° | 25.0° |
N1 | C1 | CA | CB | 60.9° | 95.0° |
C1 | N1 | CA1 | HA1 | 119.2° | 77.4° |
N1 | C1 | CA | HA | 65.8° | 145.0° |
C1 | CA | N | CB | 124.1° | 120.0° |
C1 | CA | N | HA | 108.4° | 120.0° |
C1 | CA | CB | HA | 110.5° | 120.1° |
C1 | CA | CB | OG | 140.9° | 175.0° |
CA | C1 | N1 | H1 | 35.5° | 12.6° |
C1 | CA | N | HN1 | 115.4° | 59.9° |
C1 | CA | N | HN2 | 4.6° | 64.0° |
C1 | CA | CB | HB1C | 20.9° | 55.0° |
C1 | CA | CB | HB2C | 97.6° | 64.9° |
N | CA | CB | HA | 115.4° | 119.9° |
N | CA | CB | OG | 85.0° | 65.0° |
CA | N | HN1 | HN2 | 120.0° | 123.9° |
N | CA | CB | HB1C | 155.0° | 175.0° |
N | CA | CB | HB2C | 36.5° | 55.0° |
CA | CB | OG | HB1C | 120.0° | 119.9° |
CA | CB | OG | HB2C | 121.5° | 120.0° |
CB | CA | N | HN1 | 8.8° | 60.1° |
CB | CA | N | HN2 | 128.8° | 176.0° |
CA | CB | HB1C | HB2C | 121.6° | 120.0° |
CA | CB | OG | HG | 135.4° | 180.0° |
OG | CB | CA | HA | 30.4° | 54.9° |
OG | CB | HB1C | HB2C | 121.6° | 120.0° |
HA1 | CA1 | CB1 | HB11 | 168.1° | 179.9° |
HA1 | CA1 | CB1 | HB12 | 48.6° | 59.4° |
HA1 | CA1 | N1 | H1 | 60.8° | 102.6° |
HB11 | CB1 | CG | HG1C | 61.6° | 49.6° |
HB11 | CB1 | CG | HG2C | 179.3° | 169.0° |
HB12 | CB1 | CG | HG1C | 57.9° | 70.9° |
HB12 | CB1 | CG | HG2C | 59.8° | 48.5° |
HA | CA | N | HN1 | 136.2° | 180.0° |
HA | CA | N | HN2 | 103.8° | 56.1° |
HA | CA | CB | HB1C | 89.6° | 65.0° |
HA | CA | CB | HB2C | 151.9° | 175.0° |
HB1C | CB | OG | HG | 104.6° | 60.0° |
HB2C | CB | OG | HG | 13.9° | 60.0° |