Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
N1 | C2 | doub | 1.32Å | 1.35Å | Aromatic |
N1 | C6 | sing | 1.32Å | 1.35Å | Aromatic |
C2 | C2A | sing | 1.51Å | 1.50Å | |
C2 | C3 | sing | 1.39Å | 1.40Å | Aromatic |
C2A | H2A1 | sing | 1.09Å | 1.11Å | |
C2A | H2A2 | sing | 1.09Å | 1.12Å | |
C2A | H2A3 | sing | 1.09Å | 1.11Å | |
C3 | O3 | sing | 1.36Å | 1.38Å | |
C3 | C4 | doub | 1.39Å | 1.42Å | Aromatic |
O3 | HO3 | sing | 0.97Å | 0.95Å | |
C4 | C4A | sing | 1.51Å | 1.52Å | |
C4 | C5 | sing | 1.38Å | 1.41Å | Aromatic |
C4A | N | sing | 1.47Å | 1.43Å | |
C4A | H4A1 | sing | 1.09Å | 1.11Å | |
C4A | H4A2 | sing | 1.09Å | 1.12Å | |
C5 | C6 | doub | 1.38Å | 1.40Å | Aromatic |
C5 | C5A | sing | 1.51Å | 1.51Å | |
C6 | H6 | sing | 1.08Å | 1.10Å | |
C5A | O4P | sing | 1.43Å | 1.42Å | |
C5A | H5A1 | sing | 1.09Å | 1.11Å | |
C5A | H5A2 | sing | 1.09Å | 1.12Å | |
O4P | P | sing | 1.61Å | 1.55Å | |
P | O1P | doub | 1.48Å | 1.48Å | |
P | O2P | sing | 1.61Å | 1.48Å | |
P | O3P | sing | 1.61Å | 1.50Å | |
O2P | HOP2 | sing | 0.97Å | 0.95Å | |
O3P | HOP3 | sing | 0.97Å | 0.95Å | |
N | CA | sing | 1.47Å | 1.32Å | |
N | HN | sing | 1.01Å | 1.02Å | |
CA | C | sing | 1.52Å | 1.46Å | |
CA | CB | sing | 1.55Å | 1.52Å | |
CA | HA | sing | 1.09Å | 1.12Å | |
C | O | doub | 1.21Å | 1.22Å | |
C | ND | sing | 1.35Å | 1.33Å | |
ND | OG | sing | 1.41Å | 1.41Å | |
ND | HND | sing | 0.97Å | 1.02Å | |
OG | CB | sing | 1.44Å | 1.42Å | |
CB | HB1 | sing | 1.09Å | 1.11Å | |
CB | HB2 | sing | 1.09Å | 1.11Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
C2 | N1 | C6 | 117.9° | 121.8° |
N1 | C2 | C2A | 116.1° | 119.7° |
N1 | C2 | C3 | 122.6° | 120.7° |
N1 | C6 | C5 | 123.6° | 120.9° |
N1 | C6 | H6 | 116.4° | 119.5° |
C2A | C2 | C3 | 121.3° | 119.6° |
C2 | C2A | H2A1 | 116.1° | 109.5° |
C2 | C2A | H2A2 | 109.8° | 109.5° |
C2 | C2A | H2A3 | 109.8° | 109.5° |
C2 | C3 | O3 | 118.3° | 120.5° |
C2 | C3 | C4 | 119.4° | 119.0° |
H2A1 | C2A | H2A2 | 109.7° | 109.5° |
H2A1 | C2A | H2A3 | 109.8° | 109.5° |
H2A2 | C2A | H2A3 | 100.4° | 109.5° |
O3 | C3 | C4 | 122.2° | 120.5° |
C3 | O3 | HO3 | 118.3° | 106.9° |
C3 | C4 | C4A | 123.0° | 120.8° |
C3 | C4 | C5 | 117.3° | 118.4° |
C4A | C4 | C5 | 119.7° | 120.8° |
C4 | C4A | N | 113.6° | 109.4° |
C4 | C4A | H4A1 | 110.7° | 109.5° |
C4 | C4A | H4A2 | 110.7° | 109.5° |
C4 | C5 | C6 | 118.9° | 119.2° |
C4 | C5 | C5A | 121.5° | 120.4° |
N | C4A | H4A1 | 110.7° | 109.4° |
N | C4A | H4A2 | 110.7° | 109.5° |
C4A | N | CA | 125.1° | 106.7° |
C4A | N | HN | 106.7° | 106.7° |
H4A1 | C4A | H4A2 | 99.6° | 109.5° |
C6 | C5 | C5A | 119.5° | 120.4° |
C5 | C6 | H6 | 120.0° | 119.6° |
C5 | C5A | O4P | 108.2° | 109.4° |
C5 | C5A | H5A1 | 112.7° | 109.4° |
C5 | C5A | H5A2 | 112.7° | 109.4° |
O4P | C5A | H5A1 | 112.7° | 109.6° |
O4P | C5A | H5A2 | 112.7° | 109.4° |
C5A | O4P | P | 118.2° | 106.8° |
H5A1 | C5A | H5A2 | 97.8° | 109.5° |
O4P | P | O1P | 108.4° | 109.5° |
O4P | P | O2P | 109.0° | 109.5° |
O4P | P | O3P | 109.2° | 109.5° |
O1P | P | O2P | 110.1° | 109.4° |
O1P | P | O3P | 109.8° | 109.5° |
O2P | P | O3P | 110.3° | 109.5° |
P | O2P | HOP2 | 109.1° | 106.8° |
P | O3P | HOP3 | 109.1° | 106.8° |
CA | N | HN | 106.7° | 106.7° |
N | CA | C | 125.7° | 110.8° |
N | CA | CB | 129.5° | 110.8° |
N | CA | HA | 11.8° | 110.6° |
C | CA | CB | 104.7° | 103.0° |
C | CA | HA | 136.0° | 110.7° |
CA | C | O | 123.7° | 126.4° |
CA | C | ND | 107.6° | 107.4° |
CB | CA | HA | 119.0° | 110.7° |
CA | CB | OG | 104.3° | 102.6° |
CA | CB | HB1 | 114.2° | 110.8° |
CA | CB | HB2 | 114.1° | 110.8° |
O | C | ND | 128.6° | 126.2° |
C | ND | OG | 112.3° | 111.7° |
C | ND | HND | 121.3° | 124.1° |
OG | ND | HND | 126.4° | 124.2° |
ND | OG | CB | 108.3° | 107.8° |
OG | CB | HB1 | 114.2° | 110.8° |
OG | CB | HB2 | 114.2° | 110.8° |
HB1 | CB | HB2 | 96.3° | 110.8° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
N1 | C2 | C2A | C3 | 179.9° | 179.7° |
N1 | C2 | C2A | H2A1 | 180.0° | 90.0° |
N1 | C2 | C2A | H2A2 | 54.8° | 150.0° |
N1 | C2 | C2A | H2A3 | 54.7° | 30.0° |
N1 | C2 | C3 | O3 | 176.0° | 180.0° |
N1 | C2 | C3 | C4 | 3.2° | 0.6° |
C2 | N1 | C6 | C5 | 0.2° | 0.0° |
C2 | N1 | C6 | H6 | 179.8° | 180.0° |
C6 | N1 | C2 | C2A | 176.3° | 179.9° |
C6 | N1 | C2 | C3 | 3.6° | 0.3° |
N1 | C6 | C5 | C4 | 4.3° | 0.0° |
N1 | C6 | C5 | H6 | 180.0° | 180.0° |
N1 | C6 | C5 | C5A | 176.6° | 180.0° |
C2 | C2A | H2A1 | H2A2 | 125.2° | 120.0° |
C2 | C2A | H2A1 | H2A3 | 125.3° | 120.0° |
C2 | C2A | H2A2 | H2A3 | 115.6° | 120.0° |
C2A | C2 | C3 | O3 | 4.1° | 0.3° |
C2A | C2 | C3 | C4 | 176.7° | 179.8° |
C3 | C2 | C2A | H2A1 | 0.1° | 90.4° |
C3 | C2 | C2A | H2A2 | 125.4° | 29.7° |
C3 | C2 | C2A | H2A3 | 125.2° | 149.7° |
C2 | C3 | O3 | C4 | 179.2° | 179.5° |
C2 | C3 | O3 | HO3 | 180.0° | 90.6° |
C2 | C3 | C4 | C4A | 177.6° | 179.7° |
C2 | C3 | C4 | C5 | 1.0° | 0.5° |
H2A1 | C2A | H2A2 | H2A3 | 115.6° | 120.0° |
O3 | C3 | C4 | C4A | 1.5° | 0.2° |
O3 | C3 | C4 | C5 | 179.8° | 180.0° |
C4 | C3 | O3 | HO3 | 0.8° | 89.9° |
C3 | C4 | C4A | C5 | 178.6° | 179.8° |
C3 | C4 | C4A | N | 5.1° | 89.7° |
C3 | C4 | C4A | H4A1 | 130.4° | 30.2° |
C3 | C4 | C4A | H4A2 | 120.1° | 150.2° |
C3 | C4 | C5 | C6 | 4.5° | 0.3° |
C3 | C4 | C5 | C5A | 176.4° | 179.8° |
C4 | C4A | N | H4A1 | 125.3° | 119.9° |
C4 | C4A | N | H4A2 | 125.3° | 120.0° |
C4 | C4A | H4A1 | H4A2 | 116.5° | 120.0° |
C4A | C4 | C5 | C6 | 174.2° | 179.9° |
C4A | C4 | C5 | C5A | 4.9° | 0.0° |
C4 | C4A | N | CA | 163.9° | 180.0° |
C4 | C4A | N | HN | 38.6° | 66.2° |
C5 | C4 | C4A | N | 176.3° | 90.1° |
C5 | C4 | C4A | H4A1 | 51.0° | 150.0° |
C5 | C4 | C4A | H4A2 | 58.5° | 30.0° |
C4 | C5 | C6 | C5A | 179.1° | 180.0° |
C4 | C5 | C6 | H6 | 175.6° | 180.0° |
C4 | C5 | C5A | O4P | 78.5° | 180.0° |
C4 | C5 | C5A | H5A1 | 46.7° | 60.0° |
C4 | C5 | C5A | H5A2 | 156.2° | 60.1° |
N | C4A | H4A1 | H4A2 | 116.5° | 120.1° |
C4A | N | CA | HN | 125.3° | 113.8° |
C4A | N | CA | C | 178.5° | 93.8° |
C4A | N | CA | CB | 0.1° | 152.5° |
C4A | N | CA | HA | 28.4° | 29.3° |
H4A1 | C4A | N | CA | 38.6° | 60.1° |
H4A1 | C4A | N | HN | 86.7° | 173.8° |
H4A2 | C4A | N | CA | 70.9° | 60.0° |
H4A2 | C4A | N | HN | 163.8° | 53.8° |
C6 | C5 | C5A | O4P | 100.5° | 0.0° |
C6 | C5 | C5A | H5A1 | 134.3° | 120.1° |
C6 | C5 | C5A | H5A2 | 24.7° | 119.9° |
C5A | C5 | C6 | H6 | 3.4° | 0.0° |
C5 | C5A | O4P | H5A1 | 125.3° | 120.0° |
C5 | C5A | O4P | H5A2 | 125.2° | 119.9° |
C5 | C5A | H5A1 | H5A2 | 118.6° | 120.0° |
C5 | C5A | O4P | P | 157.3° | 180.0° |
O4P | C5A | H5A1 | H5A2 | 118.6° | 120.0° |
C5A | O4P | P | O1P | 174.7° | 60.1° |
C5A | O4P | P | O2P | 65.5° | 180.0° |
C5A | O4P | P | O3P | 55.0° | 59.9° |
H5A1 | C5A | O4P | P | 32.0° | 60.0° |
H5A2 | C5A | O4P | P | 77.5° | 60.1° |
O4P | P | O1P | O2P | 119.2° | 120.0° |
O4P | P | O1P | O3P | 119.2° | 120.0° |
O4P | P | O2P | O3P | 119.8° | 120.0° |
O4P | P | O2P | HOP2 | 180.0° | 180.0° |
O4P | P | O3P | HOP3 | 180.0° | 60.0° |
O1P | P | O2P | O3P | 121.3° | 120.0° |
O1P | P | O2P | HOP2 | 61.1° | 60.0° |
O1P | P | O3P | HOP3 | 61.2° | 180.0° |
O2P | P | O3P | HOP3 | 60.2° | 60.0° |
O3P | P | O2P | HOP2 | 60.2° | 60.0° |
N | CA | C | CB | 178.8° | 118.5° |
N | CA | C | HA | 7.6° | 123.1° |
N | CA | CB | HA | 6.4° | 123.2° |
N | CA | C | O | 15.8° | 46.2° |
N | CA | C | ND | 161.8° | 133.5° |
N | CA | CB | OG | 164.6° | 143.5° |
N | CA | CB | HB1 | 39.3° | 25.2° |
N | CA | CB | HB2 | 70.1° | 98.2° |
HN | N | CA | C | 53.2° | 20.0° |
HN | N | CA | CB | 125.2° | 93.7° |
HN | N | CA | HA | 153.7° | 143.1° |
C | CA | CB | HA | 174.9° | 118.3° |
CA | C | O | ND | 177.1° | 179.7° |
CA | C | ND | OG | 13.6° | 1.5° |
CA | C | ND | HND | 166.4° | 178.7° |
C | CA | CB | OG | 14.1° | 25.0° |
C | CA | CB | HB1 | 139.4° | 93.3° |
C | CA | CB | HB2 | 111.2° | 143.3° |
CB | CA | C | O | 165.4° | 164.8° |
CB | CA | C | ND | 17.0° | 14.9° |
CA | CB | OG | ND | 6.7° | 26.9° |
CA | CB | OG | HB1 | 125.3° | 118.2° |
CA | CB | OG | HB2 | 125.2° | 118.3° |
CA | CB | HB1 | HB2 | 120.0° | 123.4° |
HA | CA | C | O | 8.1° | 76.8° |
HA | CA | C | ND | 169.5° | 103.4° |
HA | CA | CB | OG | 171.0° | 93.3° |
HA | CA | CB | HB1 | 45.7° | 148.4° |
HA | CA | CB | HB2 | 63.7° | 25.0° |
O | C | ND | OG | 168.9° | 178.8° |
O | C | ND | HND | 11.1° | 1.1° |
C | ND | OG | HND | 180.0° | 179.9° |
C | ND | OG | CB | 4.2° | 18.9° |
ND | OG | CB | HB1 | 132.0° | 91.4° |
ND | OG | CB | HB2 | 118.6° | 145.2° |
HND | ND | OG | CB | 175.8° | 161.2° |
OG | CB | HB1 | HB2 | 120.1° | 123.4° |