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SAO

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
N6C6sing1.38Å1.33Å
C6C5doub1.41Å1.42ÅAromatic
C6N1sing1.33Å1.35ÅAromatic
N7C5sing1.35Å1.39ÅAromatic
N7C8doub1.30Å1.32ÅAromatic
C5C4sing1.40Å1.38ÅAromatic
N1C2doub1.32Å1.34ÅAromatic
C8N9sing1.36Å1.36ÅAromatic
C4N9sing1.37Å1.38ÅAromatic
C4N3doub1.33Å1.34ÅAromatic
C2N3sing1.32Å1.34ÅAromatic
N9C1'sing1.46Å1.46Å
C1'C2'sing1.56Å1.53Å
C1'O4'sing1.44Å1.41Å
C2'O2'sing1.43Å1.43Å
C2'C3'sing1.55Å1.54Å
O4'C4'sing1.44Å1.45Å
C5'C4'sing1.53Å1.52Å
C5'SDsing1.81Å1.81Å
C3'C4'sing1.54Å1.54Å
C3'O3'sing1.43Å1.43Å
SDCGsing1.81Å1.82Å
CGCBsing1.53Å1.53Å
CBCAsing1.53Å1.53Å
NCAsing1.47Å1.49Å
CACsing1.51Å1.53Å
OCdoub1.21Å1.26Å
COXTsing1.34Å1.26Å
NHN2sing1.01Å1.00Å
NH3sing1.01Å1.00Å
NHN1sing1.01Å1.00Å
CAHAsing1.09Å1.10Å
CBHB1sing1.09Å1.10Å
CBHB2sing1.09Å1.10Å
CGHG2sing1.09Å1.10Å
CGHG1sing1.09Å1.10Å
OXTH1sing0.97Å0.95Å
C5'H5'2sing1.09Å1.10Å
C5'H5'1sing1.09Å1.10Å
C4'H4'sing1.09Å1.10Å
C3'H3'sing1.09Å1.10Å
O3'HO3'sing0.97Å0.95Å
C2'H2'sing1.09Å1.10Å
O2'HO2'sing0.97Å0.95Å
C1'H1'sing1.09Å1.10Å
C8H8sing1.08Å1.08Å
N6HN61sing0.97Å1.00Å
N6HN62sing0.97Å1.00Å
C2H2sing1.08Å1.08Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
N6C6C5124.1°120.8°
N6C6N1118.7°120.8°
C6N6HN61109.5°120.0°
C6N6HN62109.5°120.0°
C5C6N1117.2°118.4°
C6C5N7131.2°134.6°
C6C5C4116.9°118.2°
C6N1C2118.9°121.2°
C5N7C8102.2°109.4°
N7C5C4111.9°107.2°
N7C8N9115.1°110.0°
N7C8H8122.5°125.0°
C5C4N9105.3°106.0°
C5C4N3127.3°119.1°
N1C2N3128.9°122.5°
N1C2H2115.6°118.8°
C8N9C4105.4°107.4°
C8N9C1'127.5°126.3°
N9C8H8122.4°125.0°
N9C4N3127.4°134.9°
C4N9C1'127.1°126.3°
C4N3C2110.8°120.7°
N3C2H2115.5°118.8°
N9C1'C2'114.7°110.6°
N9C1'O4'108.6°110.7°
N9C1'H1'109.5°110.7°
C2'C1'O4'105.1°103.4°
C1'C2'O2'111.6°110.9°
C1'C2'C3'101.3°102.1°
C1'C2'H2'109.8°110.9°
C2'C1'H1'108.6°110.6°
C1'O4'C4'108.9°107.0°
O4'C1'H1'110.2°110.6°
O2'C2'C3'112.6°110.9°
O2'C2'H2'111.3°110.8°
C2'O2'HO2'109.5°114.0°
C2'C3'C4'103.7°104.2°
C2'C3'O3'111.3°110.5°
C2'C3'H3'109.6°110.6°
C3'C2'H2'109.7°111.0°
O4'C4'C5'107.3°109.9°
O4'C4'C3'106.6°107.4°
O4'C4'H4'109.9°109.8°
C4'C5'SD111.8°109.5°
C5'C4'C3'115.4°109.9°
C4'C5'H5'2108.9°109.5°
C4'C5'H5'1108.9°109.5°
C5'C4'H4'108.9°109.9°
C5'SDCG104.4°103.0°
SDC5'H5'2108.9°109.5°
SDC5'H5'1108.9°109.4°
C4'C3'O3'111.4°110.5°
C3'C4'H4'108.7°109.9°
C4'C3'H3'109.5°110.4°
O3'C3'H3'111.2°110.4°
C3'O3'HO3'109.5°114.0°
SDCGCB105.0°109.5°
SDCGHG2110.6°109.5°
SDCGHG1110.6°109.5°
CGCBCA114.6°109.5°
CGCBHB1108.2°109.5°
CGCBHB2108.2°109.5°
CBCGHG2110.6°109.5°
CBCGHG1110.6°109.5°
CBCAN111.3°109.5°
CBCAC112.4°109.5°
CBCAHA107.6°109.5°
CACBHB1108.2°109.5°
CACBHB2108.2°109.5°
NCAC109.6°109.4°
CANHN2109.5°109.5°
CANH3109.5°109.5°
CANHN1109.4°109.5°
NCAHA108.1°109.5°
CACO117.6°120.0°
CACOXT116.7°120.0°
CCAHA107.6°109.5°
OCOXT125.7°120.0°
COXTH1109.5°117.0°
HN2NH3109.5°109.4°
HN2NHN1109.5°109.4°
H3NHN1109.5°109.5°
HB1CBHB2109.5°109.4°
HG2CGHG1109.5°109.4°
H5'2C5'H5'1109.5°109.5°
HN61N6HN62109.5°120.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
N6C6C5N1178.9°180.0°
N6C6C5N70.8°0.0°
N6C6C5C4178.6°179.7°
N6C6N1C2178.7°180.0°
C6N6HN61HN62120.0°180.0°
C6C5N7C4179.4°179.8°
C6C5N7C8179.2°180.0°
C5C6N1C20.2°0.0°
C6C5C4N9179.4°179.8°
C6C5C4N30.2°0.5°
C5C6N6HN61178.8°0.0°
C5C6N6HN6261.2°180.0°
N1C6C5N7179.7°180.0°
N1C6C5C40.3°0.2°
C6N1C2N30.0°0.0°
N1C6N6HN610.0°179.9°
N1C6N6HN62120.0°0.0°
C6N1C2H2180.0°180.0°
C5N7C8N90.2°0.0°
N7C5C4N90.1°0.3°
N7C5C4N3179.7°179.7°
C5N7C8H8179.8°180.0°
C8N7C5C40.2°0.2°
N7C8N9H8180.0°180.0°
N7C8N9C40.2°0.2°
N7C8N9C1'179.2°180.0°
C5C4N9C80.1°0.3°
C5C4N9N3179.7°179.2°
C5C4N3C20.0°0.5°
C5C4N9C1'179.3°179.9°
N1C2N3C40.1°0.3°
N1C2N3H2180.0°180.0°
C8N9C4C1'179.4°179.8°
C8N9C4N3179.6°179.5°
C8N9C1'C2'47.1°95.0°
C8N9C1'O4'70.0°19.1°
C8N9C1'H1'169.6°142.1°
N9C4N3C2179.6°179.6°
C4N9C1'C2'133.6°84.8°
C4N9C1'O4'109.2°161.2°
C4N9C1'H1'11.2°38.2°
C4N9C8H8179.8°179.8°
N3C4N9C1'1.0°0.7°
C4N3C2H2179.9°179.7°
N9C1'C2'O4'119.1°118.6°
N9C1'C2'H1'122.9°123.0°
N9C1'O4'H1'120.0°123.1°
N9C1'C2'O2'82.4°86.3°
N9C1'C2'C3'157.6°155.5°
N9C1'O4'C4'156.2°158.4°
N9C1'C2'H2'41.6°37.3°
C1'N9C8H80.8°0.0°
C2'C1'O4'H1'116.9°118.4°
C1'C2'O2'C3'113.2°112.7°
C1'C2'O2'H2'123.1°123.6°
C1'C2'C3'H2'116.1°118.2°
C2'C1'O4'C4'33.0°39.9°
C1'C2'C3'C4'29.2°20.9°
C1'C2'C3'O3'90.7°97.8°
C1'C2'C3'H3'146.0°139.6°
C1'C2'O2'HO2'180.0°174.2°
O4'C1'C2'O2'158.5°155.1°
O4'C1'C2'C3'38.4°36.9°
C1'O4'C4'C5'137.6°145.9°
C1'O4'C4'C3'13.5°26.4°
C1'O4'C4'H4'104.1°93.1°
O4'C1'C2'H2'77.5°81.3°
O2'C2'C3'H2'124.6°123.6°
O2'C2'C3'C4'148.6°139.1°
O2'C2'C3'O3'28.7°20.4°
O2'C2'C3'H3'94.6°102.2°
O2'C2'C1'H1'40.5°36.7°
C2'C3'C4'O4'11.2°1.9°
C2'C3'C4'C5'107.8°121.4°
C2'C3'C4'O3'119.8°118.7°
C2'C3'C4'H3'116.9°118.8°
C2'C3'O3'H3'122.4°122.7°
C2'C3'C4'H4'129.6°117.5°
C2'C3'O3'HO3'180.0°65.3°
C3'C2'O2'HO2'66.9°61.5°
C3'C2'C1'H1'79.5°81.4°
O4'C4'C5'C3'118.5°118.0°
O4'C4'C5'H4'119.0°121.0°
O4'C4'C5'SD163.5°66.7°
O4'C4'C3'H4'118.4°119.5°
O4'C4'C3'O3'108.6°120.6°
O4'C4'C5'H5'276.2°53.3°
O4'C4'C5'H5'143.2°173.3°
O4'C4'C3'H3'128.0°116.9°
C4'O4'C1'H1'83.9°78.5°
C4'C5'SDH5'2120.3°120.1°
C4'C5'SDH5'1120.4°120.0°
C5'C4'C3'H4'122.6°121.0°
C5'C4'C3'O3'132.5°119.9°
C4'C5'SDCG75.0°180.0°
C4'C5'H5'2H5'1118.9°120.0°
C5'C4'C3'H3'9.1°2.6°
SDC5'C4'C3'78.0°175.3°
C5'SDCGCB105.6°180.0°
C5'SDCGHG2135.1°60.0°
C5'SDCGHG113.7°60.0°
SDC5'H5'2H5'1118.9°120.0°
SDC5'C4'H4'44.5°54.3°
C4'C3'O3'H3'122.4°122.5°
C3'C4'C5'H5'242.4°64.7°
C3'C4'C5'H5'1161.7°55.4°
C4'C3'O3'HO3'64.9°180.0°
C4'C3'C2'H2'86.9°97.3°
O3'C3'C4'H4'9.8°1.2°
O3'C3'C2'H2'153.3°144.0°
SDCGCBHG2119.3°120.0°
SDCGCBHG1119.3°120.0°
SDCGCBCA165.0°180.0°
SDCGCBHB174.3°60.0°
SDCGCBHB244.2°60.0°
SDCGHG2HG1122.0°120.0°
CGSDC5'H5'2164.7°60.0°
CGSDC5'H5'145.4°60.0°
CGCBCAHB1120.7°120.0°
CGCBCAHB2120.8°120.0°
CGCBCAN64.2°65.0°
CGCBCAC59.1°175.0°
CGCBCAHA177.4°55.0°
CGCBHB1HB2117.7°120.0°
CBCGHG2HG1122.1°120.0°
CBCANC124.9°120.0°
CBCANHA118.0°120.0°
CBCACHA118.4°120.0°
CBCACO85.6°100.0°
CBCACOXT95.2°80.0°
CBCANHN2180.0°60.0°
CBCANH360.0°60.0°
CBCANHN160.0°180.0°
CACBHB1HB2117.7°120.0°
CACBCGHG245.7°60.0°
CACBCGHG175.7°60.0°
NCACHA117.4°120.0°
NCACO38.7°20.0°
NCACOXT140.5°160.0°
CANHN2H3120.0°120.0°
CANHN2HN1120.0°120.0°
CANH3HN1120.0°120.1°
NCACBHB156.5°55.0°
NCACBHB2175.0°175.0°
CACOOXT179.1°179.9°
CCANHN255.1°60.0°
CCANH364.9°180.0°
CCANHN1175.1°60.0°
CCACBHB1179.8°65.0°
CCACBHB261.7°55.0°
CACOXTH1179.1°180.0°
OCCAHA156.1°140.0°
OCOXTH10.0°0.1°
OXTCCAHA23.1°40.1°
HN2NH3HN1120.0°119.9°
HN2NCAHA61.9°180.0°
H3NCAHA178.0°60.0°
HN1NCAHA58.1°60.0°
HACACBHB161.8°175.0°
HACACBHB256.7°65.0°
HB1CBCGHG2166.5°180.0°
HB1CBCGHG145.0°60.1°
HB2CBCGHG275.0°60.1°
HB2CBCGHG1163.5°180.0°
H5'2C5'C4'H4'164.9°174.3°
H5'1C5'C4'H4'75.8°65.7°
H4'C4'C3'H3'113.5°123.6°
H3'C3'O3'HO3'57.6°57.5°
H3'C3'C2'H2'30.0°21.4°
H2'C2'O2'HO2'56.8°62.2°
H2'C2'C1'H1'164.5°160.3°

239149

PDB entries from 2025-07-23

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