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SAJ

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
O2CC2Csing1.43Å1.40Å
O2C2doub1.22Å1.22Å
O3CC3Csing1.43Å1.41Å
C2CC3Csing1.54Å1.52Å
C2CC1Csing1.54Å1.52Å
C2N3sing1.35Å1.35Å
C2N1sing1.35Å1.42Å
N3C4sing1.35Å1.35Å
C3CC4Csing1.54Å1.53Å
C1CN1sing1.47Å1.47Å
C1CO4Csing1.44Å1.40Å
N1C6sing1.37Å1.37Å
C4O4doub1.22Å1.24Å
C4C5sing1.42Å1.42Å
C6C5doub1.35Å1.40Å
O4CC4Csing1.44Å1.42Å
C4CC5Csing1.53Å1.52Å
O5CC5Csing1.43Å1.41Å
O5CPAsing1.61Å1.56Å
O1APAdoub1.48Å1.48Å
PAO3Asing1.61Å1.62Å
PAO2Asing1.61Å1.47Å
O3APBsing1.61Å1.65Å
PBO2Bdoub1.48Å1.49Å
PBO1Bsing1.61Å1.44Å
PBO1'sing1.61Å1.69Å
O1'C1'sing1.43Å1.50Å
C1'C2'sing1.53Å1.48Å
C1'O5'sing1.43Å1.43Å
C2'N2'sing1.46Å1.46Å
C2'C3'sing1.53Å1.55Å
O7'C7'doub1.21Å1.23Å
O5'C5'sing1.43Å1.47Å
C7'N2'sing1.35Å1.43Å
C7'C8'sing1.51Å1.54Å
C3'O3'sing1.43Å1.42Å
C3'C4'sing1.53Å1.54Å
C5'C4'sing1.53Å1.53Å
C5'C6'sing1.51Å1.51Å
C4'O4'sing1.43Å1.38Å
O6BC6'doub1.21Å1.37Å
C6'O6Asing1.34Å1.37Å
N3H1sing0.97Å1.00Å
C5H2sing1.08Å1.08Å
C6H3sing1.08Å1.08Å
C1CH4sing1.09Å1.10Å
C2CH5sing1.09Å1.10Å
O2CH6sing0.97Å0.95Å
C3CH7sing1.09Å1.10Å
C4CH8sing1.09Å1.10Å
O3CH9sing0.97Å0.95Å
C5CH10sing1.09Å1.10Å
C5CH11sing1.09Å1.10Å
O2AH12sing0.97Å0.95Å
O1BH13sing0.97Å0.95Å
C1'H14sing1.09Å1.10Å
C2'H15sing1.09Å1.10Å
N2'H16sing0.97Å1.00Å
C8'H17sing1.09Å1.10Å
C8'H18sing1.09Å1.10Å
C8'H19sing1.09Å1.10Å
C3'H20sing1.09Å1.10Å
O3'H21sing0.97Å0.95Å
C4'H22sing1.09Å1.10Å
O4'H23sing0.97Å0.95Å
C5'H24sing1.09Å1.10Å
O6AH25sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O2CC2CC3C113.9°110.6°
O2CC2CC1C112.4°110.5°
O2CC2CH5110.3°110.5°
C2CO2CH6109.5°114.0°
O2C2N3121.1°119.5°
O2C2N1121.5°119.6°
O3CC3CC2C111.9°110.4°
O3CC3CC4C108.8°110.5°
O3CC3CH7112.2°110.5°
C3CO3CH9109.5°114.0°
C3CC2CC1C102.6°104.1°
C2CC3CC4C102.8°104.1°
C3CC2CH5108.6°110.5°
C2CC3CH7110.4°110.5°
C2CC1CN1119.0°110.4°
C2CC1CO4C104.4°104.8°
C2CC1CH4106.8°110.5°
C1CC2CH5108.6°110.5°
N3C2N1117.5°121.0°
C2N3C4126.0°120.2°
C2N3H1117.0°119.9°
C2N1C1C120.3°119.7°
C2N1C6117.8°120.6°
N3C4O4123.4°120.3°
N3C4C5117.9°119.4°
C4N3H1117.0°119.9°
C3CC4CO4C105.5°104.8°
C3CC4CC5C112.2°110.3°
C4CC3CH7110.4°110.6°
C3CC4CH8109.1°110.4°
N1C1CO4C110.6°110.3°
C1CN1C6121.9°119.7°
N1C1CH4107.4°110.3°
C1CO4CC4C112.7°105.2°
O4CC1CH4108.3°110.4°
N1C6C5123.9°119.7°
N1C6H3118.0°120.2°
O4C4C5118.7°120.3°
C4C5C6116.9°119.1°
C4C5H2121.5°120.5°
C6C5H2121.6°120.4°
C5C6H3118.0°120.1°
O4CC4CC5C110.2°110.4°
O4CC4CH8110.7°110.5°
C4CC5CO5C110.0°109.5°
C5CC4CH8109.2°110.3°
C4CC5CH10109.3°109.5°
C4CC5CH11109.3°109.5°
C5CO5CPA122.1°123.0°
O5CC5CH10109.4°109.5°
O5CC5CH11109.4°109.5°
O5CPAO1A108.2°109.5°
O5CPAO3A99.5°109.4°
O5CPAO2A108.2°109.5°
O1APAO3A111.6°109.5°
O1APAO2A118.6°109.5°
O3APAO2A109.0°109.4°
PAO3APB133.0°134.0°
PAO2AH12109.5°114.0°
O3APBO2B109.9°109.5°
O3APBO1B109.4°109.5°
O3APBO1'113.0°109.5°
O2BPBO1B112.8°109.5°
O2BPBO1'95.9°109.5°
O1BPBO1'115.3°109.4°
PBO1BH13109.5°114.0°
PBO1'C1'115.6°123.0°
O1'C1'C2'105.2°109.5°
O1'C1'O5'101.0°109.5°
O1'C1'H14110.7°109.5°
C2'C1'O5'116.4°109.4°
C1'C2'N2'107.8°109.6°
C1'C2'C3'110.8°109.1°
C2'C1'H14111.0°109.4°
C1'C2'H15110.7°109.5°
C1'O5'C5'114.0°114.1°
O5'C1'H14111.8°109.5°
N2'C2'C3'106.7°109.5°
C2'N2'C7'120.9°120.0°
N2'C2'H15111.0°109.6°
C2'N2'H16119.6°120.0°
C2'C3'O3'111.7°109.5°
C2'C3'C4'112.2°109.0°
C3'C2'H15109.8°109.5°
C2'C3'H20107.9°109.6°
O7'C7'N2'123.6°120.0°
O7'C7'C8'119.0°120.1°
O5'C5'C4'106.6°109.4°
O5'C5'C6'108.2°109.5°
O5'C5'H24109.5°109.5°
N2'C7'C8'117.4°120.0°
C7'N2'H16119.6°120.0°
C7'C8'H17109.5°109.5°
C7'C8'H18109.4°109.4°
C7'C8'H19109.5°109.5°
O3'C3'C4'107.5°109.5°
O3'C3'H20109.5°109.6°
C3'O3'H21109.5°114.0°
C3'C4'C5'108.8°109.2°
C3'C4'O4'111.3°109.6°
C4'C3'H20107.9°109.6°
C3'C4'H22107.3°109.5°
C4'C5'C6'114.7°109.5°
C5'C4'O4'112.3°109.5°
C5'C4'H22107.4°109.6°
C4'C5'H24108.8°109.5°
C5'C6'O6B111.4°120.0°
C5'C6'O6A114.7°120.0°
C6'C5'H24109.0°109.5°
O4'C4'H22109.4°109.5°
C4'O4'H23109.5°114.0°
O6BC6'O6A133.9°120.0°
C6'O6AH25109.5°117.0°
H10C5CH11109.5°109.5°
H17C8'H18109.5°109.4°
H17C8'H19109.5°109.5°
H18C8'H19109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O2CC2CC3CO3C37.7°0.0°
O2CC2CC3CC1C121.8°118.7°
O2CC2CC3CH5123.3°122.7°
O2CC2CC1CH5122.3°122.6°
O2CC2CC3CC4C154.3°118.6°
O2CC2CC1CN180.5°98.5°
O2CC2CC1CO4C155.7°142.7°
O2CC2CC1CH441.1°23.8°
O2CC2CC3CH788.0°122.6°
O2C2N3N1179.7°179.9°
O2C2N3C4179.2°180.0°
O2C2N1C1C0.2°0.4°
O2C2N1C6179.1°180.0°
O2C2N3H10.8°0.1°
O3CC3CC2CC4C116.6°118.6°
O3CC3CC2CH7125.7°122.6°
O3CC3CC2CC1C84.1°118.7°
O3CC3CC4CH7123.5°122.7°
O3CC3CC4CO4C97.6°142.6°
O3CC3CC4CC5C142.4°98.6°
O3CC3CC2CH5161.0°122.7°
O3CC3CC4CH821.3°23.6°
C3CC2CC1CH5114.9°118.6°
C2CC3CC4CH7117.8°118.7°
C3CC2CC1CN1156.6°142.8°
C3CC2CC1CO4C32.8°24.0°
C2CC3CC4CO4C21.1°24.0°
C2CC3CC4CC5C98.9°142.8°
C3CC2CC1CH481.8°94.9°
C3CC2CO2CH6180.0°61.4°
C2CC3CC4CH8140.1°95.0°
C2CC3CO3CH9180.0°61.5°
C2CC1CN1C2117.6°61.5°
C1CC2CC3CC4C32.5°0.0°
C2CC1CN1O4C120.7°115.4°
C2CC1CN1H4121.3°122.4°
C2CC1CO4CH4113.5°119.0°
C2CC1CN1C663.1°118.1°
C2CC1CO4CC4C20.7°40.5°
C1CC2CO2CH663.8°176.0°
C1CC2CC3CH7150.2°118.7°
C2N3C4H1180.0°179.9°
N3C2N1C1C180.0°179.7°
N3C2N1C60.6°0.1°
C2N3C4O4179.8°179.9°
C2N3C4C50.2°0.1°
N1C2N3C40.5°0.1°
C2N1C1CC6179.3°179.6°
C2N1C1CO4C121.6°53.9°
C2N1C6C50.5°0.1°
N1C2N3H1179.5°180.0°
C2N1C6H3179.5°180.0°
C2N1C1CH43.7°176.1°
N3C4O4C5180.0°179.9°
N3C4C5C60.0°0.0°
N3C4C5H2180.0°179.9°
C3CC4CO4CC1C0.4°40.5°
C3CC4CO4CC5C121.3°118.8°
C3CC4CO4CH8117.9°119.0°
C3CC4CC5CH8121.0°122.3°
C3CC4CC5CO5C52.5°175.0°
C4CC3CC2CH582.4°118.7°
C4CC3CO3CH967.1°176.1°
C3CC4CC5CH10172.6°55.0°
C3CC4CC5CH1167.6°65.0°
N1C1CO4CH4117.4°122.1°
C1CN1C6C5179.8°179.7°
N1C1CO4CC4C149.8°159.4°
C1CN1C6H30.2°0.4°
N1C1CC2CH541.8°24.1°
O4CC1CN1C657.7°126.5°
C1CO4CC4CC5C120.9°159.4°
O4CC1CC2CH582.0°94.7°
C1CO4CC4CH8118.3°78.4°
N1C6C5C40.1°0.1°
N1C6C5H3180.0°179.9°
N1C6C5H2179.9°179.9°
C6N1C1CH4175.6°4.3°
O4C4C5C6180.0°179.9°
O4C4N3H10.3°0.1°
O4C4C5H20.0°0.0°
C4C5C6H2180.0°180.0°
C5C4N3H1179.8°180.0°
C4C5C6H3179.9°180.0°
O4CC4CC5CH8121.7°122.4°
O4CC4CC5CO5C64.8°69.6°
C4CO4CC1CH492.8°78.5°
O4CC4CC3CH7138.9°94.6°
O4CC4CC5CH1055.3°170.4°
O4CC4CC5CH11175.1°50.4°
C4CC5CO5CH10120.1°120.0°
C4CC5CO5CH11120.1°120.0°
C4CC5CO5CPA154.2°180.0°
C5CC4CC3CH718.9°24.2°
C4CC5CH10H11119.8°120.0°
C5CO5CPAO1A179.1°55.0°
C5CO5CPAO3A64.3°175.0°
C5CO5CPAO2A49.4°65.1°
O5CC5CC4CH8173.5°52.8°
O5CC5CH10H11119.8°120.0°
O5CPAO1AO3A108.5°120.0°
O5CPAO1AO2A123.6°120.0°
O5CPAO3AO2A113.1°120.0°
O5CPAO3APB110.6°165.0°
PAO5CC5CH1034.1°60.0°
PAO5CC5CH1185.7°60.0°
O5CPAO2AH12123.6°60.0°
O1APAO3AO2A132.9°120.0°
O1APAO3APB135.3°45.0°
O1APAO2AH120.0°180.0°
PAO3APBO2B177.6°45.0°
PAO3APBO1B58.0°75.0°
PAO3APBO1'71.9°165.0°
O3APAO2AH12129.1°60.0°
O2APAO3APB2.4°75.0°
O3APBO2BO1B122.4°120.0°
O3APBO2BO1'117.0°120.0°
O3APBO1BO1'128.6°120.0°
O3APBO1'C1'104.2°175.0°
O3APBO1BH13122.7°60.0°
O2BPBO1BO1'108.8°120.0°
O2BPBO1'C1'141.3°55.0°
O2BPBO1BH130.0°180.0°
O1BPBO1'C1'22.6°65.0°
PBO1'C1'C2'146.5°150.0°
PBO1'C1'O5'92.0°90.0°
O1'PBO1BH13108.7°60.0°
PBO1'C1'H1426.5°30.0°
O1'C1'C2'O5'110.8°120.0°
O1'C1'C2'H14119.8°120.0°
O1'C1'O5'H14117.8°120.1°
O1'C1'C2'N2'176.7°177.7°
O1'C1'C2'C3'66.8°62.4°
O1'C1'O5'C5'59.0°58.8°
O1'C1'C2'H1555.1°57.5°
C2'C1'O5'H14129.1°119.9°
C1'C2'N2'C3'119.0°119.7°
C1'C2'N2'H15121.4°120.2°
C1'C2'C3'H15122.5°119.9°
C2'C1'O5'C5'54.2°61.2°
C1'C2'N2'C7'144.4°85.0°
C1'C2'C3'O3'166.4°176.9°
C1'C2'C3'C4'45.6°57.0°
C1'C2'N2'H1635.6°95.0°
C1'C2'C3'H2073.2°63.0°
O5'C1'C2'N2'72.5°62.3°
O5'C1'C2'C3'44.0°57.6°
C1'O5'C5'C4'61.4°61.2°
C1'O5'C5'C6'174.8°178.9°
O5'C1'C2'H15166.0°177.6°
C1'O5'C5'H2456.1°58.8°
N2'C2'C3'H15120.3°120.2°
C2'N2'C7'O7'0.2°0.0°
C2'N2'C7'H16180.0°179.9°
C2'N2'C7'C8'179.9°180.0°
N2'C2'C3'O3'49.3°56.9°
N2'C2'C3'C4'71.5°62.9°
N2'C2'C1'H1457.0°57.7°
N2'C2'C3'H20169.7°177.1°
C3'C2'N2'C7'96.5°155.4°
C2'C3'O3'C4'123.5°119.6°
C2'C3'O3'H20119.5°120.2°
C2'C3'C4'H20118.7°119.9°
C2'C3'C4'C5'56.3°57.0°
C2'C3'C4'O4'179.3°176.9°
C3'C2'C1'H14173.4°177.6°
C3'C2'N2'H1683.5°24.7°
C2'C3'O3'H21180.0°180.0°
C2'C3'C4'H2259.6°63.0°
O7'C7'N2'C8'179.9°180.0°
O7'C7'N2'H16179.8°180.0°
O7'C7'C8'H170.0°120.0°
O7'C7'C8'H18120.0°0.0°
O7'C7'C8'H19120.0°120.0°
O5'C5'C4'C3'61.8°57.6°
O5'C5'C4'C6'119.7°120.0°
O5'C5'C4'H24118.0°120.0°
O5'C5'C6'H24119.0°120.1°
O5'C5'C4'O4'174.5°177.5°
O5'C5'C6'O6B134.3°4.9°
O5'C5'C6'O6A46.4°175.1°
C5'O5'C1'H14176.8°178.8°
O5'C5'C4'H2254.1°62.4°
C7'N2'C2'H1523.0°35.2°
N2'C7'C8'H17179.9°60.0°
N2'C7'C8'H1860.1°180.0°
N2'C7'C8'H1959.9°60.0°
C8'C7'N2'H160.1°0.1°
C7'C8'H17H18120.0°119.9°
C7'C8'H17H19120.0°120.0°
C7'C8'H18H19120.0°120.0°
O3'C3'C4'H20118.1°120.2°
O3'C3'C4'C5'179.5°176.8°
O3'C3'C4'O4'56.2°63.3°
O3'C3'C2'H1571.1°63.2°
O3'C3'C4'H2263.5°56.8°
C3'C4'C5'O4'123.7°119.9°
C3'C4'C5'H22115.9°119.9°
C3'C4'C5'C6'178.5°177.6°
C3'C4'O4'H22118.4°120.1°
C4'C3'C2'H15168.1°176.9°
C4'C3'O3'H2156.5°60.4°
C3'C4'O4'H23180.0°180.0°
C3'C4'C5'H2456.2°62.4°
C4'C5'C6'H24122.2°120.0°
C5'C4'O4'H22119.2°120.2°
C4'C5'C6'O6B106.9°115.0°
C4'C5'C6'O6A72.5°65.0°
C5'C4'C3'H2062.4°62.9°
C5'C4'O4'H2357.7°60.3°
C6'C5'C4'O4'54.7°62.5°
C5'C6'O6BO6A179.2°179.9°
C6'C5'C4'H2265.7°57.6°
C5'C6'O6AH25179.1°180.0°
O4'C4'C3'H2061.9°57.0°
O4'C4'C5'H2467.6°57.6°
O6BC6'C5'H2415.3°124.9°
O6BC6'O6AH250.0°0.1°
O6AC6'C5'H24165.4°55.0°
H2C5C6H30.1°0.0°
H4C1CC2CH5163.4°146.4°
H5C2CO2CH657.6°61.3°
H5C2CC3CH735.3°0.1°
H7C3CC4CH8102.1°146.4°
H7C3CO3CH955.3°61.1°
H8C4CC5CH1066.4°67.3°
H8C4CC5CH1153.4°172.7°
H14C1'C2'H1564.6°62.5°
H15C2'N2'H16157.0°144.9°
H15C2'C3'H2049.4°56.9°
H17C8'H18H19120.0°120.0°
H20C3'O3'H2160.5°59.8°
H20C3'C4'H22178.4°177.1°
H22C4'O4'H2361.6°59.9°
H22C4'C5'H24172.0°177.7°

222415

PDB entries from 2024-07-10

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