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S9Y

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C40C39sing1.53Å1.52Å
C39C38sing1.53Å1.53Å
C38C37sing1.53Å1.54Å
C37C36sing1.53Å1.54Å
C36C35sing1.53Å1.55Å
C35C34sing1.53Å1.55Å
C34C33sing1.53Å1.55Å
C33C32sing1.53Å1.56Å
C32C31sing1.51Å1.53Å
C31O31doub1.21Å1.22Å
C31O2sing1.34Å1.37Å
C3C2sing1.53Å1.52Å
O2C2sing1.45Å1.44Å
C2C1sing1.53Å1.56Å
C1O3Psing1.43Å1.39Å
O3PPsing1.61Å1.69Å
C6N1sing1.47Å1.51Å
O4Pdoub1.48Å1.48Å
O5Psing1.61Å1.80Å
O5C4sing1.43Å1.36Å
PO1sing1.61Å1.48Å
C4C5sing1.53Å1.56Å
N1C8sing1.47Å1.51Å
N1C5sing1.47Å1.54Å
N1C7sing1.47Å1.52Å
C3H1sing1.09Å1.10Å
C3H2sing1.09Å1.10Å
C3H3sing1.09Å1.10Å
C2H4sing1.09Å1.10Å
C1H5sing1.09Å1.10Å
C1H6sing1.09Å1.10Å
C32H7sing1.09Å1.10Å
C32H8sing1.09Å1.10Å
C33H9sing1.09Å1.10Å
C33H10sing1.09Å1.10Å
C34H11sing1.09Å1.10Å
C34H12sing1.09Å1.10Å
C35H13sing1.09Å1.10Å
C35H14sing1.09Å1.10Å
C36H15sing1.09Å1.10Å
C36H16sing1.09Å1.10Å
C37H17sing1.09Å1.10Å
C37H18sing1.09Å1.10Å
C38H19sing1.09Å1.10Å
C38H20sing1.09Å1.10Å
C39H21sing1.09Å1.10Å
C39H22sing1.09Å1.10Å
C40H23sing1.09Å1.10Å
C40H24sing1.09Å1.10Å
C40H25sing1.09Å1.10Å
O1H26sing0.97Å0.95Å
C4H27sing1.09Å1.10Å
C4H28sing1.09Å1.10Å
C5H29sing1.09Å1.10Å
C5H30sing1.09Å1.10Å
C6H31sing1.09Å1.10Å
C6H32sing1.09Å1.10Å
C6H33sing1.09Å1.10Å
C7H34sing1.09Å1.10Å
C7H35sing1.09Å1.10Å
C7H36sing1.09Å1.10Å
C8H37sing1.09Å1.10Å
C8H38sing1.09Å1.10Å
C8H39sing1.09Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C40C39C38113.6°109.4°
C40C39H21108.4°109.5°
C40C39H22108.5°109.4°
C39C40H23109.5°109.5°
C39C40H24109.5°109.5°
C39C40H25109.4°109.4°
C39C38C37112.6°109.4°
C39C38H19108.7°109.5°
C39C38H20108.7°109.5°
C38C39H21108.4°109.5°
C38C39H22108.4°109.5°
C38C37C36114.1°109.5°
C38C37H17108.3°109.5°
C38C37H18108.3°109.4°
C37C38H19108.7°109.5°
C37C38H20108.7°109.5°
C37C36C35115.0°109.5°
C37C36H15108.1°109.5°
C37C36H16108.0°109.5°
C36C37H17108.3°109.5°
C36C37H18108.3°109.4°
C36C35C34115.2°109.5°
C36C35H13108.0°109.5°
C36C35H14108.0°109.5°
C35C36H15108.1°109.5°
C35C36H16108.1°109.5°
C35C34C33115.1°109.5°
C35C34H11108.0°109.5°
C35C34H12108.0°109.4°
C34C35H13108.0°109.5°
C34C35H14108.0°109.4°
C34C33C32115.8°109.4°
C34C33H9107.9°109.4°
C34C33H10107.8°109.4°
C33C34H11108.0°109.5°
C33C34H12108.0°109.5°
C33C32C31114.4°109.5°
C33C32H7108.2°109.5°
C33C32H8108.2°109.5°
C32C33H9107.9°109.5°
C32C33H10107.9°109.5°
C32C31O31124.5°120.0°
C32C31O2116.3°120.0°
C31C32H7108.2°109.5°
C31C32H8108.2°109.5°
O31C31O2119.2°120.0°
C31O2C2119.4°117.0°
C3C2O2110.8°109.5°
C3C2C1107.9°109.5°
C2C3H1109.5°109.5°
C2C3H2109.5°109.5°
C2C3H3109.5°109.5°
C3C2H4109.7°109.5°
O2C2C1108.2°109.5°
O2C2H4111.0°109.5°
C2C1O3P108.9°109.5°
C1C2H4109.2°109.5°
C2C1H5109.6°109.5°
C2C1H6109.6°109.5°
C1O3PP122.3°123.1°
O3PC1H5109.6°109.5°
O3PC1H6109.6°109.4°
O3PPO4108.6°109.4°
O3PPO5112.4°109.5°
O3PPO1108.0°109.5°
C6N1C8109.5°109.5°
C6N1C5110.7°109.5°
C6N1C7107.8°109.5°
N1C6H31109.5°109.4°
N1C6H32109.5°109.5°
N1C6H33109.5°109.4°
O4PO598.1°109.5°
O4PO1129.6°109.5°
PO5C4117.7°123.0°
O5PO198.7°109.5°
O5C4C5106.3°109.5°
O5C4H27110.2°109.4°
O5C4H28110.3°109.5°
PO1H26109.5°114.0°
C4C5N1113.3°109.5°
C5C4H27110.3°109.5°
C5C4H28110.2°109.5°
C4C5H29108.5°109.5°
C4C5H30108.5°109.4°
C8N1C5111.0°109.4°
C8N1C7107.6°109.5°
N1C8H37109.5°109.5°
N1C8H38109.5°109.5°
N1C8H39109.4°109.5°
C5N1C7110.1°109.5°
N1C5H29108.5°109.5°
N1C5H30108.5°109.5°
N1C7H34109.5°109.4°
N1C7H35109.5°109.5°
N1C7H36109.5°109.5°
H1C3H2109.4°109.5°
H1C3H3109.4°109.5°
H2C3H3109.5°109.5°
H5C1H6109.5°109.4°
H7C32H8109.5°109.4°
H9C33H10109.5°109.5°
H11C34H12109.5°109.4°
H13C35H14109.5°109.4°
H15C36H16109.5°109.4°
H17C37H18109.5°109.5°
H19C38H20109.5°109.5°
H21C39H22109.5°109.5°
H23C40H24109.5°109.5°
H23C40H25109.5°109.5°
H24C40H25109.4°109.5°
H27C4H28109.5°109.5°
H29C5H30109.5°109.5°
H31C6H32109.4°109.5°
H31C6H33109.5°109.5°
H32C6H33109.5°109.5°
H34C7H35109.5°109.5°
H34C7H36109.4°109.5°
H35C7H36109.5°109.5°
H37C8H38109.4°109.5°
H37C8H39109.5°109.5°
H38C8H39109.5°109.4°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C40C39C38H21120.6°120.0°
C40C39C38H22120.6°119.9°
C40C39C38C37159.8°180.0°
C40C39C38H1939.3°60.0°
C40C39C38H2079.8°60.0°
C40C39H21H22118.1°120.0°
C39C40H23H24120.0°120.1°
C39C40H23H25120.0°120.0°
C39C40H24H25120.0°120.0°
C39C38C37H19120.5°120.0°
C39C38C37H20120.4°120.0°
C39C38C37C36144.4°180.0°
C39C38C37H1794.9°60.0°
C39C38C37H1823.7°60.0°
C39C38H19H20118.6°120.0°
C38C39H21H22118.1°120.0°
C38C39C40H23180.0°60.0°
C38C39C40H2460.0°60.0°
C38C39C40H2560.0°180.0°
C38C37C36H17120.7°120.1°
C38C37C36H18120.7°120.0°
C38C37C36C35148.7°180.0°
C38C37C36H1528.0°59.9°
C38C37C36H1690.5°60.0°
C38C37H17H18117.9°120.0°
C37C38H19H20118.6°120.0°
C37C38C39H2179.6°60.0°
C37C38C39H2239.1°60.1°
C37C36C35H15120.8°120.1°
C37C36C35H16120.8°120.0°
C37C36C35C34139.2°180.0°
C37C36C35H13100.0°59.9°
C37C36C35H1418.3°60.1°
C37C36H15H16117.5°120.0°
C36C37H17H18117.8°120.0°
C36C37C38H1923.9°60.0°
C36C37C38H2095.2°60.0°
C36C35C34H13120.8°120.1°
C36C35C34H14120.8°120.0°
C36C35C34C33151.7°180.0°
C36C35C34H1130.8°59.9°
C36C35C34H1287.5°60.0°
C36C35H13H14117.4°120.0°
C35C36H15H16117.5°120.0°
C35C36C37H1790.6°59.9°
C35C36C37H1828.0°60.1°
C35C34C33H11120.8°120.0°
C35C34C33H12120.8°119.9°
C35C34C33C32135.0°180.0°
C35C34C33H9104.0°60.0°
C35C34C33H1014.1°60.0°
C35C34H11H12117.4°119.9°
C34C35H13H14117.4°119.9°
C34C35C36H1518.4°59.9°
C34C35C36H16100.0°60.0°
C34C33C32H9120.9°120.0°
C34C33C32H10120.9°119.9°
C34C33C32C31161.3°180.0°
C34C33C32H740.6°60.0°
C34C33C32H878.0°60.0°
C34C33H9H10117.1°120.0°
C33C34H11H12117.5°120.1°
C33C34C35H1387.5°59.9°
C33C34C35H1430.8°60.0°
C33C32C31H7120.7°120.0°
C33C32C31H8120.7°120.0°
C33C32C31O3117.7°0.0°
C33C32C31O2162.3°180.0°
C33C32H7H8117.8°120.0°
C32C33H9H10117.2°120.1°
C32C33C34H1114.2°60.0°
C32C33C34H12104.1°60.0°
C32C31O31O2180.0°180.0°
C32C31O2C2151.8°180.0°
C31C32H7H8117.8°120.0°
C31C32C33H977.8°60.0°
C31C32C33H1040.4°60.0°
O31C31O2C228.2°0.0°
O31C31C32H7138.4°120.0°
O31C31C32H8103.0°120.1°
C31O2C2C3113.3°90.0°
C31O2C2C1128.6°150.0°
C31O2C2H48.9°30.0°
O2C31C32H741.6°60.0°
O2C31C32H877.0°60.0°
C3C2O2C1118.1°120.0°
C3C2O2H4122.2°120.0°
C3C2C1H4119.2°120.0°
C3C2C1O3P61.8°55.0°
C2C3H1H2120.0°120.0°
C2C3H1H3120.0°120.0°
C2C3H2H3120.0°120.0°
C3C2C1H5178.3°175.0°
C3C2C1H658.1°65.0°
O2C2C1H4120.9°120.0°
O2C2C1O3P58.1°65.0°
O2C2C3H1180.0°60.0°
O2C2C3H260.0°180.0°
O2C2C3H360.0°60.0°
O2C2C1H561.8°55.1°
O2C2C1H6178.0°175.0°
C2C1O3PH5119.9°120.1°
C2C1O3PH6119.9°120.0°
C2C1O3PP168.0°180.0°
C1C2C3H161.8°60.0°
C1C2C3H2178.2°60.0°
C1C2C3H358.2°180.0°
C2C1H5H6120.3°120.0°
C1O3PPO490.2°55.0°
C1O3PPO5162.3°175.0°
C1O3PPO154.5°65.0°
O3PC1C2H4179.0°175.0°
O3PC1H5H6120.2°119.9°
O3PPO4O5117.0°120.0°
O3PPO4O1134.5°120.0°
O3PPO5O1113.6°120.1°
O3PPO5C473.0°175.0°
PO3PC1H572.1°59.9°
PO3PC1H648.1°60.0°
O3PPO1H26134.7°60.0°
C6N1C5C453.0°174.4°
C6N1C8C5122.6°120.0°
C6N1C8C7116.9°120.0°
C6N1C5C7119.1°120.1°
C6N1C5H29173.6°54.4°
C6N1C5H3067.5°65.6°
N1C6H31H32120.0°120.0°
N1C6H31H33120.0°120.0°
N1C6H32H33120.0°120.0°
C6N1C7H34180.0°48.9°
C6N1C7H3560.0°71.0°
C6N1C7H3660.0°168.9°
C6N1C8H37180.0°60.0°
C6N1C8H3860.0°60.0°
C6N1C8H3960.0°180.0°
O4PO5O1132.3°120.0°
O4PO5C4173.0°55.1°
O4PO1H260.0°180.0°
PO5C4C5161.1°180.0°
O5PO1H26108.2°60.0°
PO5C4H2779.4°60.0°
PO5C4H2841.6°60.0°
C4O5PO140.6°65.0°
O5C4C5H27119.5°119.9°
O5C4C5H28119.5°120.0°
O5C4C5N1152.6°66.5°
O5C4H27H28121.5°120.0°
O5C4C5H2986.8°173.5°
O5C4C5H3032.1°53.5°
C4C5N1C8174.9°54.4°
C4C5N1H29120.6°120.0°
C4C5N1H30120.5°120.0°
C4C5N1C766.0°65.5°
C5C4H27H28121.5°120.0°
C4C5H29H30118.3°119.9°
C8N1C5C7119.1°120.0°
C8N1C5H2964.5°65.6°
C8N1C5H3054.4°174.4°
C8N1C6H31180.0°60.0°
C8N1C6H3260.0°179.9°
C8N1C6H3360.0°60.0°
C8N1C7H3462.0°71.1°
C8N1C7H3558.0°168.9°
C8N1C7H36178.0°48.9°
N1C8H37H38120.0°120.0°
N1C8H37H39120.0°120.0°
N1C8H38H39119.9°120.0°
N1C5C4H2733.1°53.5°
N1C5C4H2887.9°173.5°
N1C5H29H30118.2°120.0°
C5N1C6H3157.2°60.0°
C5N1C6H32177.2°60.0°
C5N1C6H3362.8°180.0°
C5N1C7H3459.1°169.0°
C5N1C7H35179.2°49.0°
C5N1C7H3660.8°71.0°
C5N1C8H3757.4°60.0°
C5N1C8H3862.6°180.0°
C5N1C8H39177.4°60.0°
C7N1C5H2954.6°174.5°
C7N1C5H30173.4°54.4°
C7N1C6H3163.2°180.0°
C7N1C6H3256.8°60.0°
C7N1C6H33176.8°60.0°
N1C7H34H35120.0°120.0°
N1C7H34H36120.0°120.0°
N1C7H35H36120.0°120.0°
C7N1C8H3763.1°180.0°
C7N1C8H38176.9°60.0°
C7N1C8H3956.9°59.9°
H1C3H2H3120.0°120.0°
H1C3C2H457.1°180.0°
H2C3C2H462.9°60.0°
H3C3C2H4177.1°60.0°
H4C2C1H559.1°64.9°
H4C2C1H661.1°55.0°
H7C32C33H9161.5°179.9°
H7C32C33H1080.3°60.0°
H8C32C33H943.0°60.0°
H8C32C33H10161.1°180.0°
H9C33C34H11135.2°180.0°
H9C33C34H1216.8°60.0°
H10C33C34H11106.7°60.0°
H10C33C34H12134.9°180.0°
H11C34C35H13151.7°180.0°
H11C34C35H1490.0°60.1°
H12C34C35H1333.3°60.1°
H12C34C35H14151.6°180.0°
H13C35C36H15139.2°180.0°
H13C35C36H1620.8°60.1°
H14C35C36H15102.5°60.0°
H14C35C36H16139.1°179.9°
H15C36C37H17148.6°180.0°
H15C36C37H1892.8°60.0°
H16C36C37H1730.2°60.1°
H16C36C37H18148.8°179.9°
H17C37C38H19144.6°180.0°
H17C37C38H2025.5°60.0°
H18C37C38H1996.8°60.0°
H18C37C38H20144.1°180.0°
H19C38C39H21159.9°179.9°
H19C38C39H2281.3°59.9°
H20C38C39H2140.8°60.0°
H20C38C39H22159.6°180.0°
H21C39C40H2359.4°179.9°
H21C39C40H2460.6°60.0°
H21C39C40H25179.4°60.0°
H22C39C40H2359.4°59.9°
H22C39C40H24179.4°180.0°
H22C39C40H2560.6°60.0°
H23C40H24H25120.0°120.0°
H27C4C5H29153.7°66.6°
H27C4C5H3087.4°173.5°
H28C4C5H2932.7°53.5°
H28C4C5H30151.6°66.5°
H31C6H32H33120.0°120.0°
H34C7H35H36120.0°120.0°
H37C8H38H39120.0°119.9°

225946

PDB entries from 2024-10-09

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