S9L
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| O3P | P | sing | 1.62Å | 1.61Å | |
| O3P | HO3P | sing | 0.98Å | 0.95Å | |
| P | O2P | doub | 1.50Å | 1.49Å | |
| P | O1P | sing | 1.62Å | 1.49Å | |
| P | O5' | sing | 1.62Å | 1.59Å | |
| O1P | HO1P | sing | 0.98Å | 0.95Å | |
| O5' | C12 | sing | 1.42Å | 1.43Å | |
| C12 | C22 | sing | 1.52Å | 1.54Å | |
| C12 | H121 | sing | 1.09Å | 1.10Å | |
| C12 | H122 | sing | 1.09Å | 1.10Å | |
| C22 | OH3 | sing | 1.42Å | 1.44Å | |
| C22 | H221 | sing | 1.09Å | 1.10Å | |
| C22 | H222 | sing | 1.09Å | 1.10Å | |
| OH3 | C23 | sing | 1.42Å | 1.45Å | |
| C13 | C23 | sing | 1.52Å | 1.55Å | |
| C13 | OH4 | sing | 1.42Å | 1.45Å | |
| C13 | H131 | sing | 1.09Å | 1.10Å | |
| C13 | H132 | sing | 1.09Å | 1.10Å | |
| C23 | H231 | sing | 1.09Å | 1.10Å | |
| C23 | H232 | sing | 1.09Å | 1.10Å | |
| OH4 | C24 | sing | 1.42Å | 1.45Å | |
| C14 | C24 | sing | 1.52Å | 1.54Å | |
| C14 | O3' | sing | 1.42Å | 1.42Å | |
| C14 | H141 | sing | 1.09Å | 1.10Å | |
| C14 | H142 | sing | 1.09Å | 1.10Å | |
| C24 | H241 | sing | 1.09Å | 1.10Å | |
| C24 | H242 | sing | 1.09Å | 1.10Å | |
| O3' | HO3' | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| P | O3P | HO3P | 109.5° | 118.9° |
| O3P | P | O2P | 106.9° | 115.4° |
| O3P | P | O1P | 110.1° | 103.3° |
| O3P | P | O5' | 103.2° | 103.7° |
| O2P | P | O1P | 119.3° | 114.9° |
| O2P | P | O5' | 107.3° | 115.0° |
| O1P | P | O5' | 108.8° | 102.9° |
| P | O1P | HO1P | 109.5° | 118.9° |
| P | O5' | C12 | 121.0° | 118.5° |
| O5' | C12 | C22 | 109.9° | 109.0° |
| O5' | C12 | H121 | 109.3° | 108.1° |
| O5' | C12 | H122 | 109.2° | 108.3° |
| C22 | C12 | H121 | 109.3° | 111.1° |
| C22 | C12 | H122 | 109.2° | 110.5° |
| C12 | C22 | OH3 | 109.8° | 109.1° |
| C12 | C22 | H221 | 109.4° | 111.2° |
| C12 | C22 | H222 | 109.3° | 110.5° |
| H121 | C12 | H122 | 109.8° | 109.7° |
| OH3 | C22 | H221 | 109.4° | 108.1° |
| OH3 | C22 | H222 | 109.3° | 108.2° |
| C22 | OH3 | C23 | 113.8° | 111.5° |
| H221 | C22 | H222 | 109.7° | 109.7° |
| OH3 | C23 | C13 | 111.4° | 109.0° |
| OH3 | C23 | H231 | 108.8° | 108.1° |
| OH3 | C23 | H232 | 108.4° | 108.3° |
| C23 | C13 | OH4 | 111.9° | 109.0° |
| C23 | C13 | H131 | 108.7° | 111.1° |
| C23 | C13 | H132 | 108.2° | 110.4° |
| C13 | C23 | H231 | 108.8° | 111.2° |
| C13 | C23 | H232 | 108.4° | 110.5° |
| OH4 | C13 | H131 | 108.7° | 108.2° |
| OH4 | C13 | H132 | 108.1° | 108.3° |
| C13 | OH4 | C24 | 113.1° | 111.4° |
| H131 | C13 | H132 | 111.4° | 109.7° |
| H231 | C23 | H232 | 111.0° | 109.6° |
| OH4 | C24 | C14 | 109.9° | 109.0° |
| OH4 | C24 | H241 | 109.3° | 108.2° |
| OH4 | C24 | H242 | 109.2° | 108.3° |
| C24 | C14 | O3' | 108.1° | 109.0° |
| C24 | C14 | H141 | 109.9° | 111.2° |
| C24 | C14 | H142 | 110.2° | 110.5° |
| C14 | C24 | H241 | 109.3° | 111.1° |
| C14 | C24 | H242 | 109.3° | 110.5° |
| O3' | C14 | H141 | 109.9° | 108.1° |
| O3' | C14 | H142 | 110.2° | 108.3° |
| C14 | O3' | HO3' | 109.5° | 106.7° |
| H141 | C14 | H142 | 108.4° | 109.7° |
| H241 | C24 | H242 | 109.8° | 109.7° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O3P | P | O2P | O1P | 125.6° | 120.1° |
| O3P | P | O2P | O5' | 110.1° | 120.7° |
| O3P | P | O1P | O5' | 112.4° | 107.7° |
| O3P | P | O1P | HO1P | 95.4° | 78.4° |
| O3P | P | O5' | C12 | 46.1° | 53.2° |
| HO3P | O3P | P | O2P | 44.7° | 48.7° |
| HO3P | O3P | P | O1P | 86.3° | 77.5° |
| HO3P | O3P | P | O5' | 157.7° | 175.4° |
| O2P | P | O1P | O5' | 123.5° | 125.8° |
| O2P | P | O1P | HO1P | 28.7° | 48.1° |
| O2P | P | O5' | C12 | 66.6° | 179.9° |
| O1P | P | O5' | C12 | 163.0° | 54.2° |
| O5' | P | O1P | HO1P | 152.2° | 173.8° |
| P | O5' | C12 | C22 | 149.1° | 180.0° |
| P | O5' | C12 | H121 | 29.1° | 59.0° |
| P | O5' | C12 | H122 | 91.1° | 59.7° |
| O5' | C12 | C22 | H121 | 120.0° | 119.1° |
| O5' | C12 | C22 | H122 | 119.8° | 118.9° |
| O5' | C12 | H121 | H122 | 119.8° | 117.9° |
| O5' | C12 | C22 | OH3 | 116.1° | 60.9° |
| O5' | C12 | C22 | H221 | 123.9° | 180.0° |
| O5' | C12 | C22 | H222 | 3.7° | 58.0° |
| C22 | C12 | H121 | H122 | 119.8° | 122.5° |
| C12 | C22 | OH3 | H221 | 120.0° | 121.0° |
| C12 | C22 | OH3 | H222 | 119.9° | 120.2° |
| C12 | C22 | H221 | H222 | 119.9° | 122.5° |
| C12 | C22 | OH3 | C23 | 67.3° | 179.0° |
| H121 | C12 | C22 | OH3 | 3.9° | 180.0° |
| H121 | C12 | C22 | H221 | 116.1° | 60.9° |
| H121 | C12 | C22 | H222 | 123.7° | 61.1° |
| H122 | C12 | C22 | OH3 | 124.0° | 58.0° |
| H122 | C12 | C22 | H221 | 4.0° | 61.1° |
| H122 | C12 | C22 | H222 | 116.1° | 176.9° |
| OH3 | C22 | H221 | H222 | 119.9° | 117.8° |
| C22 | OH3 | C23 | C13 | 147.5° | 180.0° |
| C22 | OH3 | C23 | H231 | 92.5° | 59.0° |
| C22 | OH3 | C23 | H232 | 28.3° | 59.7° |
| H221 | C22 | OH3 | C23 | 172.7° | 60.0° |
| H222 | C22 | OH3 | C23 | 52.5° | 58.8° |
| OH3 | C23 | C13 | H231 | 120.0° | 119.2° |
| OH3 | C23 | C13 | H232 | 119.2° | 118.9° |
| OH3 | C23 | C13 | OH4 | 74.7° | 60.9° |
| OH3 | C23 | C13 | H131 | 165.3° | 180.0° |
| OH3 | C23 | C13 | H132 | 44.2° | 58.0° |
| OH3 | C23 | H231 | H232 | 119.2° | 117.9° |
| C23 | C13 | OH4 | H131 | 120.0° | 120.9° |
| C23 | C13 | OH4 | H132 | 119.0° | 120.2° |
| C23 | C13 | H131 | H132 | 119.0° | 122.4° |
| C13 | C23 | H231 | H232 | 119.2° | 122.4° |
| C23 | C13 | OH4 | C24 | 86.7° | 179.0° |
| OH4 | C13 | H131 | H132 | 119.0° | 118.0° |
| OH4 | C13 | C23 | H231 | 165.2° | 180.0° |
| OH4 | C13 | C23 | H232 | 44.5° | 58.0° |
| C13 | OH4 | C24 | C14 | 95.9° | 180.0° |
| C13 | OH4 | C24 | H241 | 24.1° | 59.0° |
| C13 | OH4 | C24 | H242 | 144.2° | 59.7° |
| H131 | C13 | C23 | H231 | 45.2° | 60.8° |
| H131 | C13 | C23 | H232 | 75.5° | 61.1° |
| H131 | C13 | OH4 | C24 | 153.3° | 60.0° |
| H132 | C13 | C23 | H231 | 75.8° | 61.2° |
| H132 | C13 | C23 | H232 | 163.4° | 176.9° |
| H132 | C13 | OH4 | C24 | 32.2° | 58.9° |
| OH4 | C24 | C14 | H241 | 120.0° | 119.1° |
| OH4 | C24 | C14 | H242 | 119.8° | 118.9° |
| OH4 | C24 | C14 | O3' | 145.0° | 60.9° |
| OH4 | C24 | C14 | H141 | 95.0° | 180.0° |
| OH4 | C24 | C14 | H142 | 24.5° | 58.0° |
| OH4 | C24 | H241 | H242 | 119.8° | 117.9° |
| C24 | C14 | O3' | H141 | 120.0° | 121.0° |
| C24 | C14 | O3' | H142 | 120.5° | 120.3° |
| C24 | C14 | H141 | H142 | 120.6° | 122.5° |
| C14 | C24 | H241 | H242 | 119.8° | 122.4° |
| C24 | C14 | O3' | HO3' | 53.0° | 65.3° |
| O3' | C14 | H141 | H142 | 120.6° | 117.9° |
| O3' | C14 | C24 | H241 | 25.0° | 180.0° |
| O3' | C14 | C24 | H242 | 95.2° | 58.0° |
| H141 | C14 | C24 | H241 | 145.0° | 60.9° |
| H141 | C14 | C24 | H242 | 24.8° | 61.1° |
| H141 | C14 | O3' | HO3' | 67.0° | 173.7° |
| H142 | C14 | C24 | H241 | 95.5° | 61.1° |
| H142 | C14 | C24 | H242 | 144.3° | 176.9° |
| H142 | C14 | O3' | HO3' | 173.5° | 55.0° |
