S6G
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| P | OP1 | doub | 1.48Å | 1.48Å | |
| P | OP2 | sing | 1.61Å | 1.48Å | |
| P | OP3 | sing | 1.61Å | 18.84Å | |
| P | O5' | sing | 1.61Å | 1.61Å | |
| OP2 | HOP2 | sing | 0.97Å | 0.95Å | |
| OP3 | HOP3 | sing | 0.97Å | 0.00Å | |
| O5' | C5' | sing | 1.43Å | 1.44Å | |
| C5' | C4' | sing | 1.53Å | 1.54Å | |
| C5' | H5' | sing | 1.09Å | 1.09Å | |
| C5' | H5'' | sing | 1.09Å | 1.09Å | |
| C4' | O4' | sing | 1.44Å | 1.44Å | |
| C4' | C3' | sing | 1.55Å | 1.53Å | |
| C4' | H4' | sing | 1.09Å | 1.09Å | |
| O4' | C1' | sing | 1.44Å | 1.44Å | |
| C3' | O3' | sing | 1.43Å | 1.44Å | |
| C3' | C2' | sing | 1.55Å | 1.51Å | |
| C3' | H3' | sing | 1.09Å | 1.09Å | |
| O3' | HO3' | sing | 0.97Å | 0.95Å | |
| C2' | C1' | sing | 1.54Å | 1.53Å | |
| C2' | H2' | sing | 1.09Å | 1.09Å | |
| C2' | H2'' | sing | 1.09Å | 1.09Å | |
| C1' | N9 | sing | 1.46Å | 1.48Å | |
| C1' | H1' | sing | 1.09Å | 1.09Å | |
| N9 | C8 | sing | 1.36Å | 1.36Å | Aromatic |
| N9 | C4 | sing | 1.37Å | 1.38Å | Aromatic |
| C8 | N7 | doub | 1.30Å | 1.30Å | Aromatic |
| C8 | H8 | sing | 1.08Å | 1.09Å | |
| N7 | C5 | sing | 1.36Å | 1.39Å | Aromatic |
| C5 | C6 | sing | 1.41Å | 1.42Å | |
| C5 | C4 | doub | 1.40Å | 1.37Å | Aromatic |
| C6 | S6 | doub | 1.71Å | 1.72Å | |
| C6 | N1 | sing | 1.35Å | 1.39Å | |
| N1 | C2 | sing | 1.36Å | 1.38Å | |
| N1 | HN1 | sing | 0.97Å | 1.01Å | |
| C2 | N2 | sing | 1.37Å | 1.42Å | |
| C2 | N3 | doub | 1.31Å | 1.34Å | |
| N2 | HN21 | sing | 0.97Å | 1.01Å | |
| N2 | HN22 | sing | 0.97Å | 1.01Å | |
| N3 | C4 | sing | 1.34Å | 1.35Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| OP1 | P | OP2 | 119.6° | 109.4° |
| OP1 | P | OP3 | 118.2° | 109.5° |
| OP1 | P | O5' | 108.5° | 109.5° |
| OP2 | P | OP3 | 114.2° | 109.5° |
| OP2 | P | O5' | 107.5° | 109.5° |
| P | OP2 | HOP2 | 109.5° | 114.0° |
| OP3 | P | O5' | 80.8° | 109.5° |
| P | OP3 | HOP3 | 90.0° | 114.1° |
| P | O5' | C5' | 123.6° | 123.0° |
| O5' | C5' | C4' | 112.4° | 109.5° |
| O5' | C5' | H5' | 108.9° | 109.5° |
| O5' | C5' | H5'' | 109.2° | 109.5° |
| C4' | C5' | H5' | 108.4° | 109.4° |
| C4' | C5' | H5'' | 108.9° | 109.5° |
| C5' | C4' | O4' | 111.4° | 110.7° |
| C5' | C4' | C3' | 114.2° | 110.6° |
| C5' | C4' | H4' | 108.3° | 110.6° |
| H5' | C5' | H5'' | 109.0° | 109.5° |
| O4' | C4' | C3' | 105.2° | 103.5° |
| O4' | C4' | H4' | 108.6° | 110.6° |
| C4' | O4' | C1' | 108.5° | 107.0° |
| C3' | C4' | H4' | 108.9° | 110.7° |
| C4' | C3' | O3' | 111.5° | 110.9° |
| C4' | C3' | C2' | 99.5° | 102.1° |
| C4' | C3' | H3' | 110.5° | 110.9° |
| O4' | C1' | C2' | 104.8° | 107.3° |
| O4' | C1' | N9 | 108.7° | 109.9° |
| O4' | C1' | H1' | 110.3° | 109.9° |
| O3' | C3' | C2' | 113.8° | 110.9° |
| O3' | C3' | H3' | 108.3° | 110.8° |
| C3' | O3' | HO3' | 109.5° | 114.0° |
| C2' | C3' | H3' | 113.1° | 111.0° |
| C3' | C2' | C1' | 99.8° | 104.2° |
| C3' | C2' | H2' | 107.9° | 110.5° |
| C3' | C2' | H2'' | 114.9° | 110.5° |
| C1' | C2' | H2' | 108.6° | 110.5° |
| C1' | C2' | H2'' | 113.9° | 110.4° |
| C2' | C1' | N9 | 111.8° | 109.9° |
| C2' | C1' | H1' | 109.7° | 109.9° |
| H2' | C2' | H2'' | 111.1° | 110.6° |
| N9 | C1' | H1' | 111.3° | 110.0° |
| C1' | N9 | C8 | 128.9° | 126.3° |
| C1' | N9 | C4 | 126.8° | 126.3° |
| C8 | N9 | C4 | 104.2° | 107.5° |
| N9 | C8 | N7 | 116.2° | 109.8° |
| N9 | C8 | H8 | 122.2° | 125.1° |
| N9 | C4 | C5 | 106.3° | 106.1° |
| N9 | C4 | N3 | 125.9° | 134.2° |
| N7 | C8 | H8 | 121.6° | 125.1° |
| C8 | N7 | C5 | 102.2° | 109.3° |
| N7 | C5 | C6 | 129.4° | 134.1° |
| N7 | C5 | C4 | 111.1° | 107.2° |
| C6 | C5 | C4 | 119.6° | 118.6° |
| C5 | C6 | S6 | 127.9° | 120.8° |
| C5 | C6 | N1 | 111.9° | 118.3° |
| C5 | C4 | N3 | 127.8° | 119.7° |
| S6 | C6 | N1 | 120.2° | 120.8° |
| C6 | N1 | C2 | 124.9° | 120.4° |
| C6 | N1 | HN1 | 115.8° | 119.9° |
| C2 | N1 | HN1 | 119.3° | 119.8° |
| N1 | C2 | N2 | 116.7° | 119.1° |
| N1 | C2 | N3 | 123.5° | 121.9° |
| N2 | C2 | N3 | 119.8° | 119.1° |
| C2 | N2 | HN21 | 118.3° | 120.0° |
| C2 | N2 | HN22 | 120.0° | 120.0° |
| C2 | N3 | C4 | 112.4° | 121.1° |
| HN21 | N2 | HN22 | 121.7° | 120.0° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| OP1 | P | OP2 | OP3 | 148.3° | 120.0° |
| OP1 | P | OP2 | O5' | 124.1° | 120.0° |
| OP1 | P | OP3 | O5' | 106.1° | 120.0° |
| OP1 | P | OP2 | HOP2 | 105.3° | 180.0° |
| OP1 | P | OP3 | HOP3 | 90.0° | 60.0° |
| OP1 | P | O5' | C5' | 42.1° | 55.0° |
| OP2 | P | OP3 | O5' | 105.1° | 120.0° |
| OP2 | P | OP3 | HOP3 | 90.0° | 60.0° |
| OP2 | P | O5' | C5' | 172.8° | 65.0° |
| OP3 | P | OP2 | HOP2 | 43.0° | 60.0° |
| OP3 | P | O5' | C5' | 74.6° | 175.0° |
| O5' | P | OP2 | HOP2 | 130.6° | 60.0° |
| O5' | P | OP3 | HOP3 | 90.0° | 180.0° |
| P | O5' | C5' | C4' | 177.9° | 180.0° |
| P | O5' | C5' | H5' | 62.0° | 60.0° |
| P | O5' | C5' | H5'' | 56.9° | 60.0° |
| O5' | C5' | C4' | H5' | 120.4° | 120.0° |
| O5' | C5' | C4' | H5'' | 121.1° | 120.0° |
| O5' | C5' | H5' | H5'' | 119.0° | 120.0° |
| O5' | C5' | C4' | O4' | 59.4° | 66.5° |
| O5' | C5' | C4' | C3' | 59.7° | 179.5° |
| O5' | C5' | C4' | H4' | 178.8° | 56.5° |
| C4' | C5' | H5' | H5'' | 118.4° | 120.0° |
| C5' | C4' | O4' | C3' | 124.3° | 118.5° |
| C5' | C4' | O4' | H4' | 119.2° | 122.9° |
| C5' | C4' | C3' | H4' | 121.2° | 122.9° |
| C5' | C4' | O4' | C1' | 111.2° | 158.5° |
| C5' | C4' | C3' | O3' | 154.3° | 86.3° |
| C5' | C4' | C3' | C2' | 85.3° | 155.6° |
| C5' | C4' | C3' | H3' | 33.8° | 37.3° |
| H5' | C5' | C4' | O4' | 61.0° | 53.5° |
| H5' | C5' | C4' | C3' | 179.9° | 60.6° |
| H5' | C5' | C4' | H4' | 58.4° | 176.5° |
| H5'' | C5' | C4' | O4' | 179.5° | 173.5° |
| H5'' | C5' | C4' | C3' | 61.4° | 59.5° |
| H5'' | C5' | C4' | H4' | 60.1° | 63.5° |
| O4' | C4' | C3' | H4' | 116.3° | 118.6° |
| O4' | C4' | C3' | O3' | 83.2° | 155.2° |
| O4' | C4' | C3' | C2' | 37.2° | 37.0° |
| O4' | C4' | C3' | H3' | 156.3° | 81.2° |
| C4' | O4' | C1' | C2' | 16.5° | 26.5° |
| C4' | O4' | C1' | N9 | 136.2° | 145.9° |
| C4' | O4' | C1' | H1' | 101.5° | 92.9° |
| C3' | C4' | O4' | C1' | 13.0° | 40.1° |
| C4' | C3' | O3' | C2' | 111.5° | 112.7° |
| C4' | C3' | O3' | H3' | 121.8° | 123.6° |
| C4' | C3' | C2' | H3' | 117.2° | 118.2° |
| C4' | C3' | O3' | HO3' | 175.9° | 180.0° |
| C4' | C3' | C2' | C1' | 45.5° | 20.9° |
| C4' | C3' | C2' | H2' | 67.9° | 139.5° |
| C4' | C3' | C2' | H2'' | 167.7° | 97.8° |
| H4' | C4' | O4' | C1' | 129.5° | 78.6° |
| H4' | C4' | C3' | O3' | 33.1° | 36.6° |
| H4' | C4' | C3' | C2' | 153.5° | 81.5° |
| H4' | C4' | C3' | H3' | 87.4° | 160.2° |
| O4' | C1' | C2' | C3' | 39.5° | 2.0° |
| O4' | C1' | C2' | N9 | 117.6° | 119.4° |
| O4' | C1' | C2' | H1' | 118.4° | 119.4° |
| O4' | C1' | C2' | H2' | 73.3° | 116.7° |
| O4' | C1' | C2' | H2'' | 162.4° | 120.7° |
| O4' | C1' | N9 | H1' | 121.7° | 121.1° |
| O4' | C1' | N9 | C8 | 63.8° | 23.6° |
| O4' | C1' | N9 | C4 | 115.6° | 156.8° |
| O3' | C3' | C2' | H3' | 124.1° | 123.6° |
| O3' | C3' | C2' | C1' | 73.2° | 139.1° |
| O3' | C3' | C2' | H2' | 173.4° | 102.3° |
| O3' | C3' | C2' | H2'' | 49.0° | 20.4° |
| C2' | C3' | O3' | HO3' | 64.3° | 67.3° |
| C3' | C2' | C1' | H2' | 112.8° | 118.7° |
| C3' | C2' | C1' | H2'' | 122.9° | 118.7° |
| C3' | C2' | H2' | H2'' | 126.7° | 122.7° |
| C3' | C2' | C1' | N9 | 157.1° | 121.4° |
| C3' | C2' | C1' | H1' | 78.9° | 117.4° |
| H3' | C3' | O3' | HO3' | 62.3° | 56.3° |
| H3' | C3' | C2' | C1' | 162.7° | 97.3° |
| H3' | C3' | C2' | H2' | 49.4° | 21.3° |
| H3' | C3' | C2' | H2'' | 75.1° | 144.0° |
| C1' | C2' | H2' | H2'' | 125.9° | 122.6° |
| C2' | C1' | N9 | H1' | 123.1° | 121.1° |
| C2' | C1' | N9 | C8 | 51.4° | 94.3° |
| C2' | C1' | N9 | C4 | 129.2° | 85.4° |
| H2' | C2' | C1' | N9 | 44.3° | 2.8° |
| H2' | C2' | C1' | H1' | 168.2° | 124.0° |
| H2'' | C2' | C1' | N9 | 80.0° | 119.9° |
| H2'' | C2' | C1' | H1' | 44.0° | 1.3° |
| C1' | N9 | C8 | C4 | 179.5° | 179.7° |
| C1' | N9 | C8 | N7 | 179.5° | 180.0° |
| C1' | N9 | C8 | H8 | 0.4° | 0.0° |
| C1' | N9 | C4 | C5 | 179.5° | 179.9° |
| C1' | N9 | C4 | N3 | 0.5° | 0.7° |
| H1' | C1' | N9 | C8 | 174.5° | 144.6° |
| H1' | C1' | N9 | C4 | 6.1° | 35.7° |
| N9 | C8 | N7 | H8 | 179.9° | 180.0° |
| N9 | C8 | N7 | C5 | 0.0° | 0.0° |
| C8 | N9 | C4 | C5 | 0.0° | 0.4° |
| C8 | N9 | C4 | N3 | 179.9° | 179.5° |
| C4 | N9 | C8 | N7 | 0.0° | 0.2° |
| C4 | N9 | C8 | H8 | 179.9° | 179.7° |
| N9 | C4 | C5 | N7 | 0.0° | 0.4° |
| N9 | C4 | C5 | C6 | 180.0° | 179.9° |
| N9 | C4 | C5 | N3 | 180.0° | 179.3° |
| N9 | C4 | N3 | C2 | 180.0° | 179.6° |
| C8 | N7 | C5 | C6 | 180.0° | 179.9° |
| C8 | N7 | C5 | C4 | 0.0° | 0.2° |
| H8 | C8 | N7 | C5 | 179.9° | 180.0° |
| N7 | C5 | C6 | C4 | 180.0° | 179.6° |
| N7 | C5 | C6 | S6 | 0.2° | 0.1° |
| N7 | C5 | C6 | N1 | 180.0° | 180.0° |
| N7 | C5 | C4 | N3 | 179.9° | 179.7° |
| C5 | C6 | S6 | N1 | 179.8° | 179.9° |
| C5 | C6 | N1 | C2 | 0.1° | 0.0° |
| C5 | C6 | N1 | HN1 | 179.9° | 179.9° |
| C6 | C5 | C4 | N3 | 0.0° | 0.6° |
| C4 | C5 | C6 | S6 | 179.8° | 179.7° |
| C4 | C5 | C6 | N1 | 0.0° | 0.3° |
| C5 | C4 | N3 | C2 | 0.0° | 0.5° |
| S6 | C6 | N1 | C2 | 179.9° | 180.0° |
| S6 | C6 | N1 | HN1 | 0.1° | 0.0° |
| C6 | N1 | C2 | HN1 | 180.0° | 180.0° |
| C6 | N1 | C2 | N2 | 179.6° | 180.0° |
| C6 | N1 | C2 | N3 | 0.1° | 0.0° |
| N1 | C2 | N2 | N3 | 179.7° | 179.9° |
| N1 | C2 | N2 | HN21 | 172.8° | 0.1° |
| N1 | C2 | N2 | HN22 | 7.3° | 180.0° |
| N1 | C2 | N3 | C4 | 0.0° | 0.2° |
| HN1 | N1 | C2 | N2 | 0.4° | 0.1° |
| HN1 | N1 | C2 | N3 | 179.9° | 180.0° |
| C2 | N2 | HN21 | HN22 | 179.9° | 180.0° |
| N2 | C2 | N3 | C4 | 179.6° | 179.7° |
| N3 | C2 | N2 | HN21 | 6.8° | 180.0° |
| N3 | C2 | N2 | HN22 | 173.0° | 0.0° |
