Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
P | OP1 | sing | 1.61Å | 1.48Å | |
P | OP2 | sing | 1.61Å | 1.48Å | |
P | OP3 | doub | 1.48Å | 1.62Å | |
P | O5' | sing | 1.61Å | 1.59Å | |
OP1 | HOP1 | sing | 0.97Å | 0.95Å | |
OP2 | HOP2 | sing | 0.97Å | 0.95Å | |
O5' | C5' | sing | 1.43Å | 1.43Å | |
S4 | C4 | doub | 1.71Å | 1.27Å | |
C5' | C4' | sing | 1.53Å | 1.51Å | |
C5' | H5'1 | sing | 1.09Å | 1.12Å | |
C5' | H5'2 | sing | 1.09Å | 1.12Å | |
C4' | O4' | sing | 1.45Å | 1.45Å | |
C4' | C3' | sing | 1.54Å | 1.52Å | |
C4' | H4' | sing | 1.09Å | 1.12Å | |
O4' | C1' | sing | 1.44Å | 1.41Å | |
C1' | N1 | sing | 1.47Å | 1.46Å | |
C1' | C2' | sing | 1.54Å | 1.53Å | |
C1' | H1' | sing | 1.09Å | 1.12Å | |
N1 | C6 | sing | 1.37Å | 1.37Å | |
N1 | C2 | sing | 1.34Å | 1.38Å | |
C6 | C5 | doub | 1.35Å | 1.34Å | |
C6 | H6 | sing | 1.08Å | 1.10Å | |
C2 | O2 | doub | 1.22Å | 1.22Å | |
C2 | N3 | sing | 1.35Å | 1.38Å | |
N3 | C4 | sing | 1.35Å | 1.39Å | |
N3 | H3 | sing | 0.97Å | 1.02Å | |
C4 | C5 | sing | 1.41Å | 1.43Å | |
C5 | H5 | sing | 1.08Å | 1.10Å | |
C2' | O2' | sing | 1.43Å | 1.41Å | |
C2' | C3' | sing | 1.54Å | 1.52Å | |
C2' | H2' | sing | 1.09Å | 1.11Å | |
O2' | HO2' | sing | 0.97Å | 0.95Å | |
C3' | O3' | sing | 1.43Å | 1.42Å | |
C3' | H3' | sing | 1.09Å | 1.11Å | |
O3' | HO3' | sing | 0.97Å | 0.95Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
OP1 | P | OP2 | 119.8° | 109.5° |
OP1 | P | OP3 | 112.1° | 109.4° |
OP1 | P | O5' | 109.1° | 109.5° |
P | OP1 | HOP1 | 119.8° | 106.8° |
OP2 | P | OP3 | 108.1° | 109.5° |
OP2 | P | O5' | 104.4° | 109.5° |
P | OP2 | HOP2 | 119.8° | 106.8° |
OP3 | P | O5' | 101.7° | 109.5° |
P | O5' | C5' | 119.8° | 106.8° |
O5' | C5' | C4' | 110.4° | 109.5° |
O5' | C5' | H5'1 | 111.9° | 109.4° |
O5' | C5' | H5'2 | 111.9° | 109.5° |
S4 | C4 | N3 | 121.4° | 120.3° |
S4 | C4 | C5 | 124.6° | 120.2° |
C4' | C5' | H5'1 | 111.9° | 109.5° |
C4' | C5' | H5'2 | 111.9° | 109.5° |
C5' | C4' | O4' | 109.6° | 110.4° |
C5' | C4' | C3' | 116.2° | 110.7° |
C5' | C4' | H4' | 103.3° | 110.3° |
H5'1 | C5' | H5'2 | 98.5° | 109.5° |
O4' | C4' | C3' | 104.6° | 104.7° |
O4' | C4' | H4' | 115.2° | 110.4° |
C4' | O4' | C1' | 109.7° | 105.4° |
C3' | C4' | H4' | 108.4° | 110.3° |
C4' | C3' | C2' | 102.0° | 104.2° |
C4' | C3' | O3' | 111.3° | 110.5° |
C4' | C3' | H3' | 113.8° | 110.5° |
O4' | C1' | N1 | 107.6° | 110.5° |
O4' | C1' | C2' | 107.7° | 104.8° |
O4' | C1' | H1' | 112.6° | 110.3° |
N1 | C1' | C2' | 111.7° | 110.4° |
N1 | C1' | H1' | 108.7° | 110.3° |
C1' | N1 | C6 | 121.6° | 119.7° |
C1' | N1 | C2 | 117.6° | 119.7° |
C2' | C1' | H1' | 108.6° | 110.4° |
C1' | C2' | O2' | 108.7° | 110.7° |
C1' | C2' | C3' | 101.8° | 104.1° |
C1' | C2' | H2' | 115.5° | 110.5° |
C6 | N1 | C2 | 120.9° | 120.6° |
N1 | C6 | C5 | 122.9° | 119.7° |
N1 | C6 | H6 | 119.7° | 120.2° |
N1 | C2 | O2 | 122.1° | 119.6° |
N1 | C2 | N3 | 115.2° | 120.9° |
C5 | C6 | H6 | 117.3° | 120.2° |
C6 | C5 | C4 | 119.9° | 119.1° |
C6 | C5 | H5 | 116.8° | 120.5° |
O2 | C2 | N3 | 122.7° | 119.5° |
C2 | N3 | C4 | 127.1° | 120.3° |
C2 | N3 | H3 | 116.3° | 119.8° |
C4 | N3 | H3 | 116.7° | 119.9° |
N3 | C4 | C5 | 114.0° | 119.4° |
C4 | C5 | H5 | 123.3° | 120.4° |
O2' | C2' | C3' | 111.4° | 110.5° |
O2' | C2' | H2' | 106.5° | 110.5° |
C2' | O2' | HO2' | 108.7° | 106.9° |
C3' | C2' | H2' | 113.0° | 110.5° |
C2' | C3' | O3' | 111.6° | 110.5° |
C2' | C3' | H3' | 113.6° | 110.5° |
O3' | C3' | H3' | 104.7° | 110.4° |
C3' | O3' | HO3' | 111.4° | 106.8° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
OP1 | P | OP2 | OP3 | 130.0° | 120.0° |
OP1 | P | OP2 | O5' | 122.4° | 120.0° |
OP1 | P | OP3 | O5' | 116.3° | 120.0° |
OP1 | P | OP2 | HOP2 | 180.0° | 60.0° |
OP1 | P | O5' | C5' | 174.5° | 180.0° |
OP2 | P | OP3 | O5' | 109.5° | 120.0° |
OP2 | P | OP1 | HOP1 | 180.0° | 60.0° |
OP2 | P | O5' | C5' | 56.3° | 60.0° |
OP3 | P | OP1 | HOP1 | 51.8° | 60.0° |
OP3 | P | OP2 | HOP2 | 50.0° | 180.0° |
OP3 | P | O5' | C5' | 56.0° | 60.0° |
O5' | P | OP1 | HOP1 | 60.0° | 180.0° |
O5' | P | OP2 | HOP2 | 57.7° | 60.0° |
P | O5' | C5' | C4' | 158.6° | 180.0° |
P | O5' | C5' | H5'1 | 76.1° | 60.0° |
P | O5' | C5' | H5'2 | 33.3° | 60.0° |
O5' | C5' | C4' | H5'1 | 125.3° | 119.9° |
O5' | C5' | C4' | H5'2 | 125.3° | 120.0° |
O5' | C5' | H5'1 | H5'2 | 117.8° | 120.0° |
O5' | C5' | C4' | O4' | 63.5° | 61.5° |
O5' | C5' | C4' | C3' | 54.7° | 176.9° |
O5' | C5' | C4' | H4' | 173.2° | 60.8° |
S4 | C4 | C5 | C6 | 179.8° | 179.9° |
S4 | C4 | N3 | C2 | 179.5° | 179.7° |
S4 | C4 | N3 | C5 | 179.7° | 179.9° |
S4 | C4 | N3 | H3 | 0.4° | 0.1° |
S4 | C4 | C5 | H5 | 0.2° | 0.1° |
C4' | C5' | H5'1 | H5'2 | 117.7° | 120.0° |
C5' | C4' | O4' | C3' | 125.2° | 119.1° |
C5' | C4' | O4' | H4' | 115.9° | 122.2° |
C5' | C4' | C3' | H4' | 115.7° | 122.3° |
C5' | C4' | O4' | C1' | 146.1° | 159.4° |
C5' | C4' | C3' | C2' | 156.4° | 142.8° |
C5' | C4' | C3' | O3' | 84.5° | 98.5° |
C5' | C4' | C3' | H3' | 33.6° | 24.0° |
H5'1 | C5' | C4' | O4' | 171.2° | 178.6° |
H5'1 | C5' | C4' | C3' | 70.6° | 63.2° |
H5'1 | C5' | C4' | H4' | 48.0° | 59.1° |
H5'2 | C5' | C4' | O4' | 61.8° | 58.5° |
H5'2 | C5' | C4' | C3' | 180.0° | 56.9° |
H5'2 | C5' | C4' | H4' | 61.5° | 179.2° |
O4' | C4' | C3' | H4' | 123.4° | 118.7° |
C4' | O4' | C1' | N1 | 118.1° | 159.3° |
C4' | O4' | C1' | C2' | 2.5° | 40.4° |
C4' | O4' | C1' | H1' | 122.2° | 78.4° |
O4' | C4' | C3' | C2' | 35.5° | 23.8° |
O4' | C4' | C3' | O3' | 154.6° | 142.5° |
O4' | C4' | C3' | H3' | 87.3° | 94.9° |
C3' | C4' | O4' | C1' | 20.9° | 40.3° |
C4' | C3' | C2' | C1' | 35.9° | 0.1° |
C4' | C3' | C2' | O2' | 79.8° | 118.9° |
C4' | C3' | C2' | O3' | 118.9° | 118.7° |
C4' | C3' | C2' | H3' | 123.0° | 118.7° |
C4' | C3' | C2' | H2' | 160.3° | 118.5° |
C4' | C3' | O3' | H3' | 123.4° | 122.6° |
C4' | C3' | O3' | HO3' | 180.0° | 178.1° |
H4' | C4' | O4' | C1' | 98.0° | 78.3° |
H4' | C4' | C3' | C2' | 87.9° | 94.9° |
H4' | C4' | C3' | O3' | 31.3° | 23.8° |
H4' | C4' | C3' | H3' | 149.3° | 146.4° |
O4' | C1' | N1 | C2' | 118.0° | 115.5° |
O4' | C1' | N1 | H1' | 122.2° | 122.3° |
O4' | C1' | C2' | H1' | 122.2° | 118.8° |
O4' | C1' | N1 | C6 | 6.5° | 124.6° |
O4' | C1' | N1 | C2 | 173.8° | 55.2° |
O4' | C1' | C2' | O2' | 93.0° | 142.7° |
O4' | C1' | C2' | C3' | 24.6° | 24.0° |
O4' | C1' | C2' | H2' | 147.4° | 94.6° |
N1 | C1' | C2' | H1' | 119.9° | 122.3° |
C1' | N1 | C6 | C2 | 179.7° | 179.7° |
C1' | N1 | C6 | C5 | 179.8° | 180.0° |
C1' | N1 | C6 | H6 | 0.2° | 0.0° |
C1' | N1 | C2 | O2 | 0.4° | 0.3° |
C1' | N1 | C2 | N3 | 179.6° | 179.8° |
N1 | C1' | C2' | O2' | 149.0° | 98.4° |
N1 | C1' | C2' | C3' | 93.4° | 142.9° |
N1 | C1' | C2' | H2' | 29.4° | 24.3° |
C2' | C1' | N1 | C6 | 111.5° | 120.0° |
C2' | C1' | N1 | C2 | 68.3° | 60.3° |
C1' | C2' | O2' | C3' | 111.3° | 114.8° |
C1' | C2' | O2' | H2' | 125.1° | 122.7° |
C1' | C2' | C3' | H2' | 124.5° | 118.6° |
C1' | C2' | O2' | HO2' | 180.0° | 176.2° |
C1' | C2' | C3' | O3' | 154.8° | 118.7° |
C1' | C2' | C3' | H3' | 87.1° | 118.8° |
H1' | C1' | N1 | C6 | 128.7° | 2.3° |
H1' | C1' | N1 | C2 | 51.6° | 177.4° |
H1' | C1' | C2' | O2' | 29.2° | 23.9° |
H1' | C1' | C2' | C3' | 146.8° | 94.8° |
H1' | C1' | C2' | H2' | 90.5° | 146.6° |
N1 | C6 | C5 | H6 | 180.0° | 180.0° |
C6 | N1 | C2 | O2 | 179.9° | 180.0° |
C6 | N1 | C2 | N3 | 0.2° | 0.5° |
N1 | C6 | C5 | C4 | 0.1° | 0.0° |
N1 | C6 | C5 | H5 | 179.8° | 180.0° |
C2 | N1 | C6 | C5 | 0.0° | 0.3° |
C2 | N1 | C6 | H6 | 180.0° | 179.7° |
N1 | C2 | O2 | N3 | 179.9° | 179.5° |
N1 | C2 | N3 | C4 | 0.3° | 0.5° |
N1 | C2 | N3 | H3 | 179.7° | 179.7° |
C6 | C5 | C4 | N3 | 0.0° | 0.0° |
C6 | C5 | C4 | H5 | 180.0° | 180.0° |
H6 | C6 | C5 | C4 | 179.9° | 180.0° |
H6 | C6 | C5 | H5 | 0.2° | 0.0° |
O2 | C2 | N3 | C4 | 179.8° | 180.0° |
O2 | C2 | N3 | H3 | 0.2° | 0.2° |
C2 | N3 | C4 | H3 | 179.9° | 179.8° |
C2 | N3 | C4 | C5 | 0.2° | 0.2° |
N3 | C4 | C5 | H5 | 179.9° | 180.0° |
H3 | N3 | C4 | C5 | 179.8° | 180.0° |
O2' | C2' | C3' | H2' | 119.9° | 122.5° |
O2' | C2' | C3' | O3' | 39.1° | 0.2° |
O2' | C2' | C3' | H3' | 157.2° | 122.4° |
C3' | C2' | O2' | HO2' | 68.7° | 61.4° |
C2' | C3' | O3' | H3' | 123.3° | 122.6° |
C2' | C3' | O3' | HO3' | 66.8° | 63.3° |
H2' | C2' | O2' | HO2' | 54.9° | 61.1° |
H2' | C2' | C3' | O3' | 80.7° | 122.7° |
H2' | C2' | C3' | H3' | 37.4° | 0.2° |
H3' | C3' | O3' | HO3' | 56.6° | 59.3° |