Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

S3M

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C7C6doub1.38Å1.41ÅAromatic
C7C8sing1.38Å1.38ÅAromatic
C6C5sing1.40Å1.37ÅAromatic
C8C9doub1.38Å1.38ÅAromatic
C5C10doub1.39Å1.43ÅAromatic
C5C1sing1.48Å1.43Å
C9C10sing1.38Å1.36ÅAromatic
C1C2doub1.37Å1.44ÅAromatic
C1Nsing1.36Å1.42ÅAromatic
C2C3sing1.40Å1.44ÅAromatic
CNsing1.47Å1.46Å
NN1sing1.40Å1.36ÅAromatic
C3N1doub1.31Å1.39ÅAromatic
C3C4sing1.51Å1.52Å
C4Osing1.43Å1.41Å
C4H1sing1.09Å1.10Å
C4H2sing1.09Å1.10Å
C6H3sing1.08Å1.08Å
C7H4sing1.08Å1.08Å
C8H5sing1.08Å1.08Å
C10H6sing1.08Å1.08Å
CH7sing1.09Å1.10Å
CH8sing1.09Å1.10Å
CH9sing1.09Å1.10Å
OH10sing0.97Å0.95Å
C2H11sing1.08Å1.08Å
C9H12sing1.08Å1.08Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C6C7C8120.4°120.1°
C7C6C5121.4°119.9°
C7C6H3119.3°120.1°
C6C7H4119.8°120.0°
C7C8C9118.8°120.3°
C8C7H4119.8°119.9°
C7C8H5120.6°119.9°
C6C5C10116.5°119.7°
C6C5C1128.8°120.1°
C5C6H3119.3°120.0°
C8C9C10120.8°120.1°
C9C8H5120.6°119.8°
C8C9H12119.6°120.0°
C10C5C1113.3°120.2°
C5C10C9122.2°119.9°
C5C10H6118.9°120.0°
C5C1C2123.3°126.3°
C5C1N132.1°126.4°
C9C10H6118.9°120.1°
C10C9H12119.6°120.0°
C2C1N103.8°107.4°
C1C2C3107.3°107.8°
C1C2H11126.4°126.1°
C1NC128.1°126.1°
C1NN1113.4°107.7°
C2C3N1108.9°108.6°
C2C3C4129.7°125.7°
C3C2H11126.4°126.0°
CNN1118.6°126.1°
NCH7109.5°109.5°
NCH8109.4°109.5°
NCH9109.5°109.5°
NN1C3106.7°108.6°
N1C3C4121.3°125.7°
C3C4O109.2°109.5°
C3C4H1109.5°109.4°
C3C4H2109.5°109.5°
OC4H1109.5°109.5°
OC4H2109.5°109.5°
C4OH10109.5°114.0°
H1C4H2109.5°109.5°
H7CH8109.5°109.4°
H7CH9109.5°109.5°
H8CH9109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C6C7C8H4180.0°180.0°
C7C6C5H3180.0°180.0°
C6C7C8C90.5°0.0°
C7C6C5C100.7°0.0°
C7C6C5C1165.7°179.7°
C6C7C8H5179.5°180.0°
C8C7C6C51.4°0.0°
C7C8C9H5180.0°180.0°
C7C8C9C100.9°0.0°
C8C7C6H3178.6°180.0°
C7C8C9H12179.1°180.0°
C6C5C10C1167.3°179.7°
C6C5C10C90.7°0.0°
C6C5C1C2136.2°159.1°
C6C5C1N31.5°21.0°
C5C6C7H4178.6°180.0°
C6C5C10H6179.3°179.7°
C8C9C10C51.6°0.0°
C8C9C10H12180.0°180.0°
C9C8C7H4179.5°179.9°
C8C9C10H6178.4°179.7°
C5C10C9H6180.0°179.8°
C10C5C1C258.5°20.6°
C10C5C1N133.8°159.4°
C10C5C6H3179.3°180.0°
C5C10C9H12178.4°179.9°
C1C5C10C9166.5°179.7°
C5C1C2N170.6°179.9°
C5C1C2C3170.7°180.0°
C5C1NC10.7°0.1°
C5C1NN1170.3°180.0°
C1C5C6H314.3°0.3°
C1C5C10H613.4°0.1°
C5C1C2H119.2°0.0°
C10C9C8H5179.1°180.0°
C1C2C3H11180.0°180.0°
C2C1NC179.8°180.0°
C2C1NN10.9°0.0°
C1C2C3N10.6°0.0°
C1C2C3C4175.5°180.0°
NC1C2C30.1°0.0°
C1NCN1178.9°180.0°
C1NN1C31.3°0.0°
C1NCH7178.9°84.2°
C1NCH858.9°35.7°
C1NCH961.1°155.8°
NC1C2H11179.9°180.0°
C2C3N1N1.1°0.0°
C2C3N1C4176.5°180.0°
C2C3C4O66.6°0.0°
C2C3C4H1173.4°120.0°
C2C3C4H253.3°120.0°
CNN1C3179.6°180.0°
NCH7H8120.0°120.0°
NCH7H9120.0°120.0°
NCH8H9120.0°120.0°
NN1C3C4175.3°180.0°
N1NCH70.0°95.8°
N1NCH8120.0°144.3°
N1NCH9120.0°24.2°
N1C3C4O117.7°180.0°
N1C3C4H12.3°60.0°
N1C3C4H2122.4°60.0°
N1C3C2H11179.4°180.0°
C3C4OH1119.9°120.0°
C3C4OH2120.0°120.0°
C3C4H1H2120.1°120.0°
C3C4OH10180.0°180.0°
C4C3C2H114.5°0.0°
OC4H1H2120.1°120.0°
H1C4OH1060.1°60.0°
H2C4OH1060.0°60.0°
H3C6C7H41.4°0.0°
H4C7C8H50.5°0.0°
H5C8C9H120.9°0.0°
H6C10C9H121.6°0.3°
H7CH8H9120.0°120.0°

220113

PDB entries from 2024-05-22

PDB statisticsPDBj update infoContact PDBjnumon