Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

S3B

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C7C1doub1.39Å1.41ÅAromatic
O2C1sing1.36Å1.36Å
C1C12sing1.40Å1.41ÅAromatic
C3O2sing1.34Å1.34Å
C4C3sing1.51Å1.51Å
C3O6doub1.21Å1.23Å
C5C4sing1.53Å1.54Å
C4H4sing1.09Å1.10Å
C4H4Asing1.09Å1.10Å
C5H5sing1.09Å1.10Å
C5H5Asing1.09Å1.10Å
C5H5Bsing1.09Å1.10Å
C8C7sing1.51Å1.54Å
C7C9sing1.38Å1.40ÅAromatic
C8H8sing1.09Å1.10Å
C8H8Asing1.09Å1.10Å
C8H8Bsing1.09Å1.10Å
C9C10doub1.39Å1.40ÅAromatic
C9H9sing1.08Å1.08Å
C10C11sing1.38Å1.40ÅAromatic
C10H10sing1.08Å1.08Å
C12C11doub1.40Å1.40ÅAromatic
C11H11sing1.08Å1.08Å
C12C13sing1.47Å1.52Å
O14C13doub1.22Å1.26Å
C13O15sing1.35Å1.26Å
O15HO15sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C7C1O2118.0°120.2°
C7C1C12120.6°119.7°
C1C7C8118.4°119.9°
C1C7C9120.5°120.1°
O2C1C12121.4°120.1°
C1O2C3120.8°117.0°
C1C12C11118.5°119.6°
C1C12C13121.5°120.2°
O2C3C4112.4°120.0°
O2C3O6123.2°120.0°
C4C3O6124.3°120.0°
C3C4C5112.5°109.5°
C3C4H4108.5°109.5°
C3C4H4A107.8°109.5°
C5C4H4108.5°109.5°
C5C4H4A107.8°109.4°
C4C5H5109.5°109.5°
C4C5H5A109.5°109.5°
C4C5H5B109.5°109.4°
H4C4H4A111.9°109.4°
H5C5H5A109.5°109.5°
H5C5H5B109.4°109.5°
H5AC5H5B109.5°109.4°
C8C7C9121.0°120.0°
C7C8H8109.5°109.5°
C7C8H8A109.5°109.4°
C7C8H8B109.5°109.5°
C7C9C10118.9°120.4°
C7C9H9120.6°119.8°
H8C8H8A109.4°109.5°
H8C8H8B109.5°109.5°
H8AC8H8B109.5°109.4°
C10C9H9120.6°119.8°
C9C10C11120.6°120.3°
C9C10H10119.7°119.8°
C11C10H10119.7°119.9°
C10C11C12120.9°119.9°
C10C11H11119.5°120.1°
C12C11H11119.6°120.0°
C11C12C13119.9°120.2°
C12C13O14120.3°120.0°
C12C13O15119.8°120.0°
O14C13O15119.9°120.0°
C13O15HO15109.5°117.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C7C1O2C12177.6°179.8°
C7C1O2C3103.7°89.7°
C1C7C8C9179.9°179.9°
C1C7C8H8175.7°90.0°
C1C7C8H8A64.3°150.0°
C1C7C8H8B55.7°30.0°
C1C7C9C100.1°0.1°
C1C7C9H9179.9°180.0°
C7C1C12C110.4°0.0°
C7C1C12C13177.8°179.7°
C1O2C3C4176.7°179.9°
C1O2C3O65.1°0.0°
O2C1C7C82.0°0.2°
O2C1C7C9177.9°179.7°
O2C1C12C11177.9°179.8°
O2C1C12C134.7°0.1°
C12C1O2C378.7°90.0°
C12C1C7C8179.6°180.0°
C12C1C7C90.3°0.0°
C1C12C11C100.1°0.0°
C1C12C11C13177.5°179.7°
C1C12C11H11179.9°179.9°
C1C12C13O1436.2°0.0°
C1C12C13O15142.5°180.0°
O2C3C4O6178.2°180.0°
O2C3C4C5167.2°180.0°
O2C3C4H472.8°60.0°
O2C3C4H4A48.5°60.0°
C3C4C5H4120.0°120.1°
C3C4C5H4A118.7°120.0°
C3C4H4H4A118.7°120.0°
C3C4C5H5131.9°180.0°
C3C4C5H5A11.9°59.9°
C3C4C5H5B108.1°60.0°
O6C3C4C514.7°0.1°
O6C3C4H4105.3°120.0°
O6C3C4H4A133.4°120.0°
C5C4H4H4A118.8°119.9°
C4C5H5H5A120.0°120.1°
C4C5H5H5B120.0°120.0°
C4C5H5AH5B120.0°119.9°
H4C4C5H5108.1°59.9°
H4C4C5H5A131.9°180.0°
H4C4C5H5B11.9°60.1°
H4AC4C5H513.2°60.0°
H4AC4C5H5A106.8°60.1°
H4AC4C5H5B133.2°180.0°
H5C5H5AH5B120.0°120.0°
C7C8H8H8A120.0°120.0°
C7C8H8H8B120.0°120.1°
C7C8H8AH8B120.0°120.0°
C8C7C9C10179.9°180.0°
C8C7C9H90.1°0.1°
C9C7C8H84.1°89.9°
C9C7C8H8A115.8°30.1°
C9C7C8H8B124.2°150.0°
C7C9C10H9180.0°179.9°
C7C9C10C110.3°0.0°
C7C9C10H10179.7°180.0°
H8C8H8AH8B120.0°120.0°
C9C10C11H10180.0°180.0°
C9C10C11C120.2°0.0°
C9C10C11H11179.8°179.9°
H9C9C10C11179.7°179.9°
H9C9C10H100.3°0.1°
C10C11C12H11180.0°180.0°
C10C11C12C13177.6°179.7°
H10C10C11C12179.8°180.0°
H10C10C11H110.2°0.1°
C11C12C13O14146.4°179.7°
C11C12C13O1534.9°0.3°
H11C11C12C132.4°0.4°
C12C13O14O15178.7°180.0°
C12C13O15HO15178.7°180.0°
O14C13O15HO150.0°0.0°

222415

PDB entries from 2024-07-10

PDB statisticsPDBj update infoContact PDBjnumon