Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

S1Y

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
O2S1doub1.42Å1.36Å
S1O4doub1.42Å1.36Å
S1N5sing1.66Å1.64Å
S1O3sing1.52Å1.59Å
O3HO3sing0.97Å0.95Å
N5C6sing1.46Å1.50Å
N5HN5sing0.97Å1.00Å
C7C6sing1.55Å1.55Å
C6C10sing1.54Å1.51Å
C6H6sing1.09Å1.10Å
C7C8sing1.55Å1.50Å
C7H7sing1.09Å1.10Å
C7H7Asing1.09Å1.10Å
C8N9sing1.47Å1.44Å
C8H8sing1.09Å1.10Å
C8H8Asing1.09Å1.10Å
N9C13sing1.35Å1.34Å
N9C10sing1.47Å1.43Å
C11C10sing1.51Å1.51Å
C10H10sing1.09Å1.10Å
O12C11doub1.21Å1.22Å
C11H11sing1.08Å1.08Å
N15C13sing1.35Å1.42Å
C13O14doub1.22Å1.19Å
N15C16sing1.47Å1.47Å
N15HN15sing0.97Å1.00Å
C17C16sing1.50Å1.53Å
C16C25sing1.54Å1.52Å
C16H16sing1.09Å1.10Å
C18C17sing1.54Å1.52Å
C17H17sing1.09Å1.10Å
C17H17Asing1.09Å1.10Å
C18C19sing1.54Å1.51Å
C18H18sing1.09Å1.10Å
C18H18Asing1.09Å1.10Å
C19N20sing1.44Å1.47Å
C19H19sing1.09Å1.10Å
C19H19Asing1.09Å1.10Å
N20C21sing1.47Å1.58Å
N20C24sing1.48Å1.49Å
C22C21sing1.53Å1.59Å
C21H21sing1.09Å1.10Å
C21H21Asing1.09Å1.10Å
C22N23sing1.47Å1.50Å
C22H22sing1.09Å1.10Å
C22H22Asing1.09Å1.10Å
N23HN23sing1.01Å1.00Å
N23HN2Asing1.01Å1.00Å
C25C24sing1.46Å1.54Å
C24H24sing1.09Å1.10Å
C24H24Asing1.09Å1.10Å
C25H25sing1.09Å1.10Å
C25H25Asing1.09Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O2S1O4110.9°123.2°
O2S1N5111.5°106.4°
O2S1O3106.7°106.4°
O4S1N5103.6°106.4°
O4S1O3114.0°106.4°
N5S1O3110.2°107.2°
S1N5C6109.8°120.0°
S1N5HN5109.4°120.0°
S1O3HO3109.5°113.9°
C6N5HN5109.4°120.0°
N5C6C7111.5°110.8°
N5C6C10103.7°110.7°
N5C6H6109.7°110.6°
C7C6C10101.8°103.0°
C7C6H6111.4°110.9°
C6C7C8103.7°101.6°
C6C7H7111.4°111.0°
C6C7H7A111.4°111.1°
C10C6H6118.4°110.7°
C6C10N9104.7°107.3°
C6C10C11107.2°109.9°
C6C10H10114.5°109.8°
C8C7H7111.4°111.0°
C8C7H7A111.4°111.0°
C7C8N9103.5°104.8°
C7C8H8111.5°110.4°
C7C8H8A111.5°110.3°
H7C7H7A107.5°110.9°
N9C8H8111.5°110.4°
N9C8H8A111.5°110.4°
C8N9C13127.8°125.6°
C8N9C10113.2°108.7°
H8C8H8A107.4°110.4°
C13N9C10117.5°125.7°
N9C13N15117.9°120.0°
N9C13O14122.9°120.0°
N9C10C11111.1°109.9°
N9C10H10110.9°109.9°
C11C10H10108.5°110.0°
C10C11O12122.8°120.0°
C10C11H11118.6°120.0°
O12C11H11118.6°119.9°
N15C13O14118.4°120.0°
C13N15C16118.8°120.0°
C13N15HN15120.6°120.0°
C16N15HN15120.6°120.0°
N15C16C17102.6°109.6°
N15C16C25103.0°109.6°
N15C16H16120.2°109.6°
C17C16C25116.3°108.9°
C17C16H16107.8°109.7°
C16C17C18107.7°113.1°
C16C17H17110.1°108.8°
C16C17H17A110.1°108.7°
C25C16H16107.5°109.5°
C16C25C24110.7°111.6°
C16C25H25109.1°109.0°
C16C25H25A109.1°109.1°
C18C17H17110.1°108.8°
C18C17H17A110.0°108.7°
C17C18C19112.5°112.3°
C17C18H18108.5°108.9°
C17C18H18A108.5°108.9°
H17C17H17A108.9°108.7°
C19C18H18108.5°108.9°
C19C18H18A108.5°108.9°
C18C19N20117.8°111.9°
C18C19H19106.8°109.0°
C18C19H19A106.8°109.0°
H18C18H18A110.5°108.8°
N20C19H19106.8°109.0°
N20C19H19A106.8°109.0°
C19N20C2191.1°111.0°
C19N20C24116.3°109.5°
H19C19H19A112.0°108.9°
C21N20C24102.8°111.0°
N20C21C22113.1°109.5°
N20C21H21108.3°109.5°
N20C21H21A108.3°109.4°
N20C24C25106.9°112.9°
N20C24H24110.4°108.8°
N20C24H24A110.4°108.9°
C22C21H21108.3°109.5°
C22C21H21A108.3°109.5°
C21C22N23107.1°109.5°
C21C22H22110.3°109.4°
C21C22H22A110.3°109.5°
H21C21H21A110.6°109.5°
N23C22H22110.3°109.5°
N23C22H22A110.3°109.5°
C22N23HN23109.5°111.0°
C22N23HN2A109.4°111.0°
H22C22H22A108.6°109.4°
HN23N23HN2A109.5°110.9°
C25C24H24110.3°108.8°
C25C24H24A110.4°108.7°
C24C25H25109.0°109.0°
C24C25H25A109.1°109.1°
H24C24H24A108.5°108.7°
H25C25H25A109.9°108.9°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O2S1O4N5119.7°123.0°
O2S1O4O3120.5°123.0°
O2S1N5O3118.3°113.5°
O2S1O3HO30.0°66.5°
O2S1N5C677.3°178.5°
O2S1N5HN5162.7°1.5°
O4S1N5O3122.3°113.5°
O4S1O3HO3122.8°66.5°
O4S1N5C6163.3°48.5°
O4S1N5HN543.3°131.5°
N5S1O3HO3121.2°180.0°
S1N5C6HN5120.0°180.0°
S1N5C6C767.0°101.5°
S1N5C6C10175.7°145.0°
S1N5C6H656.9°21.9°
O3S1N5C641.0°65.0°
O3S1N5HN579.0°115.0°
N5C6C7C10110.0°118.3°
N5C6C7H6122.9°123.2°
N5C6C10H6121.7°123.0°
N5C6C7C8146.2°82.8°
N5C6C7H726.2°35.2°
N5C6C7H7A93.8°159.1°
N5C6C10N9145.1°96.2°
N5C6C10C1127.1°23.2°
N5C6C10H1093.3°144.4°
HN5N5C6C7173.0°78.5°
HN5N5C6C1064.3°35.0°
HN5N5C6H663.1°158.1°
C7C6C10H6122.4°118.6°
C6C7C8H7120.0°118.0°
C6C7C8H7A120.0°118.1°
C6C7H7H7A122.3°123.9°
C6C7C8N929.2°37.0°
C6C7C8H8149.2°81.8°
C6C7C8H8A90.8°155.8°
C7C6C10N929.3°22.2°
C7C6C10C1188.8°141.6°
C7C6C10H10150.8°97.2°
C10C6C7C836.2°35.5°
C10C6C7H783.8°153.6°
C10C6C7H7A156.2°82.6°
C6C10N9C812.0°1.1°
C6C10N9C13179.5°178.9°
C6C10N9C11115.3°119.4°
C6C10N9H10124.0°119.4°
C6C10C11H10124.1°121.1°
C6C10C11O1281.4°115.0°
C6C10C11H1198.6°65.0°
H6C6C7C890.9°154.0°
H6C6C7H7149.1°88.0°
H6C6C7H7A29.1°35.8°
H6C6C10N993.2°140.8°
H6C6C10C11148.8°99.8°
H6C6C10H1028.4°21.4°
C8C7H7H7A122.3°123.9°
C7C8N9H8120.0°118.9°
C7C8N9H8A120.0°118.8°
C7C8H8H8A122.4°122.3°
C7C8N9C13154.7°155.9°
C7C8N9C1011.3°24.1°
H7C7C8N990.8°155.1°
H7C7C8H829.2°36.2°
H7C7C8H8A149.2°86.1°
H7AC7C8N9149.2°81.1°
H7AC7C8H890.8°160.0°
H7AC7C8H8A29.2°37.7°
N9C8H8H8A122.5°122.3°
C8N9C13C10165.4°180.0°
C8N9C10C11103.3°118.4°
C8N9C10H10136.0°120.4°
C8N9C13N1524.2°0.0°
C8N9C13O14166.1°180.0°
H8C8N9C1334.7°85.3°
H8C8N9C10131.2°94.7°
H8AC8N9C1385.3°37.1°
H8AC8N9C10108.7°142.9°
C13N9C10C1164.2°61.7°
C13N9C10H1056.5°59.6°
N9C13N15O14170.2°179.9°
N9C13N15C16179.5°180.0°
N9C13N15HN150.5°0.1°
N9C10C11H10122.1°121.1°
N9C10C11O1232.4°127.2°
N9C10C11H11147.6°52.8°
C10N9C13N15170.4°180.0°
C10N9C13O140.7°0.1°
C10C11O12H11180.0°180.0°
H10C10C11O12154.4°6.1°
H10C10C11H1125.5°173.9°
C13N15C16HN15180.0°179.9°
C13N15C16C17112.2°85.6°
C13N15C16C25126.7°155.0°
C13N15C16H167.3°34.7°
O14C13N15C1610.3°0.1°
O14C13N15HN15169.7°180.0°
N15C16C17C25111.5°119.8°
N15C16C17H16127.8°120.3°
N15C16C25H16127.8°120.2°
N15C16C17C18179.8°148.0°
N15C16C17H1760.2°27.1°
N15C16C17H17A59.8°91.2°
N15C16C25C24177.8°163.0°
N15C16C25H2557.8°76.5°
N15C16C25H25A62.2°42.4°
HN15N15C16C1767.8°94.4°
HN15N15C16C2553.3°25.0°
HN15N15C16H16172.7°145.2°
C17C16C25H16120.9°119.9°
C16C17C18H17120.0°121.0°
C16C17C18H17A120.0°120.8°
C16C17H17H17A120.7°118.3°
C16C17C18C1987.6°41.7°
C16C17C18H1832.4°79.1°
C16C17C18H18A152.4°162.4°
C17C16C25C2466.5°77.1°
C17C16C25H2553.5°43.4°
C17C16C25H25A173.6°162.2°
C25C16C17C1868.3°92.1°
C25C16C17H17171.7°146.9°
C25C16C17H17A51.7°28.7°
C16C25C24N2086.9°61.3°
C16C25C24H25120.0°120.5°
C16C25C24H25A120.0°120.6°
C16C25C24H2433.1°59.6°
C16C25C24H24A153.1°177.8°
C16C25H25H25A119.5°118.9°
H16C16C17C1852.4°27.7°
H16C16C17H1767.6°93.3°
H16C16C17H17A172.4°148.5°
H16C16C25C2454.4°42.8°
H16C16C25H25174.4°163.3°
H16C16C25H25A65.6°77.9°
C18C17H17H17A120.7°118.2°
C17C18C19H18120.0°120.7°
C17C18C19H18A120.0°120.8°
C17C18H18H18A118.8°118.6°
C17C18C19N2062.9°41.1°
C17C18C19H19177.1°79.5°
C17C18C19H19A57.1°161.7°
H17C17C18C19152.4°162.6°
H17C17C18H1887.6°41.9°
H17C17C18H18A32.4°76.6°
H17AC17C18C1932.4°79.2°
H17AC17C18H18152.4°160.1°
H17AC17C18H18A87.6°41.6°
C19C18H18H18A118.8°118.6°
C18C19N20H19120.0°120.6°
C18C19N20H19A120.0°120.6°
C18C19H19H19A116.6°118.8°
C18C19N20C21121.6°140.7°
C18C19N20C2416.7°96.5°
H18C18C19N2057.1°161.8°
H18C18C19H1962.9°41.2°
H18C18C19H19A177.1°77.6°
H18AC18C19N20177.1°79.7°
H18AC18C19H1957.1°159.7°
H18AC18C19H19A62.9°41.0°
N20C19H19H19A116.6°118.8°
C19N20C21C24117.3°122.0°
C19N20C21C2224.6°66.1°
C19N20C21H2195.4°173.9°
C19N20C21H21A144.6°53.9°
C19N20C24C2582.5°83.3°
C19N20C24H2437.5°37.6°
C19N20C24H24A157.5°155.9°
H19C19N20C211.6°98.7°
H19C19N20C24103.3°24.1°
H19AC19N20C21118.4°20.1°
H19AC19N20C24136.7°142.9°
N20C21C22H21120.0°120.0°
N20C21C22H21A120.0°120.0°
N20C21H21H21A118.5°120.0°
N20C21C22N23146.3°180.0°
N20C21C22H2226.3°60.0°
N20C21C22H22A93.7°60.0°
C21N20C24C25179.8°153.9°
C21N20C24H2460.2°85.3°
C21N20C24H24A59.8°33.1°
C24N20C21C2292.7°171.9°
C24N20C21H21147.3°51.9°
C24N20C21H21A27.3°68.0°
N20C24C25H24120.0°120.8°
N20C24C25H24A120.0°120.9°
N20C24H24H24A121.1°118.4°
N20C24C25H2533.1°59.3°
N20C24C25H25A153.1°178.1°
C22C21H21H21A118.5°120.0°
C21C22N23H22120.0°120.0°
C21C22N23H22A120.0°120.0°
C21C22H22H22A121.0°120.0°
C21C22N23HN23180.0°56.1°
C21C22N23HN2A60.0°179.9°
H21C21C22N2393.7°60.0°
H21C21C22H22146.3°180.0°
H21C21C22H22A26.3°60.0°
H21AC21C22N2326.3°60.0°
H21AC21C22H2293.7°60.0°
H21AC21C22H22A146.3°180.0°
N23C22H22H22A121.0°120.0°
C22N23HN23HN2A120.0°123.9°
H22C22N23HN2360.0°63.9°
H22C22N23HN2A180.0°59.9°
H22AC22N23HN2360.0°176.1°
H22AC22N23HN2A60.0°60.1°
C25C24H24H24A121.0°118.2°
C24C25H25H25A119.5°119.0°
H24C24C25H25153.1°179.9°
H24C24C25H25A86.9°61.0°
H24AC24C25H2586.9°61.7°
H24AC24C25H25A33.1°57.2°

223166

PDB entries from 2024-07-31

PDB statisticsPDBj update infoContact PDBjnumon