Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

S1D

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C5C6doub1.38Å1.38ÅAromatic
C5C4sing1.38Å1.38ÅAromatic
C6C1sing1.40Å1.39ÅAromatic
C4C3doub1.39Å1.40ÅAromatic
C1C2doub1.39Å1.39ÅAromatic
C1Csing1.48Å1.51Å
C3C2sing1.39Å1.39ÅAromatic
C3C7sing1.48Å1.48Å
O1Cdoub1.21Å1.26Å
COsing1.35Å1.26Å
C7C12doub1.39Å1.40ÅAromatic
C7C8sing1.39Å1.39ÅAromatic
C12C11sing1.38Å1.38ÅAromatic
C8C9doub1.38Å1.38ÅAromatic
C11C10doub1.39Å1.37ÅAromatic
C9C10sing1.39Å1.37ÅAromatic
C10Fsing1.35Å1.36Å
OH8sing0.97Å0.95Å
C11H6sing1.08Å1.08Å
C12H7sing1.08Å1.08Å
C2Hsing1.08Å1.08Å
C4H1sing1.08Å1.08Å
C5H2sing1.08Å1.08Å
C6H3sing1.08Å1.08Å
C8H4sing1.08Å1.08Å
C9H5sing1.08Å1.08Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C6C5C4120.3°120.3°
C5C6C1120.2°120.1°
C6C5H2119.9°119.8°
C5C6H3119.9°120.0°
C5C4C3120.8°120.2°
C5C4H1119.6°119.9°
C4C5H2119.9°119.9°
C6C1C2119.1°119.8°
C6C1C120.5°120.1°
C1C6H3119.9°119.9°
C4C3C2118.2°119.9°
C4C3C7121.0°120.1°
C3C4H1119.6°119.9°
C2C1C120.4°120.1°
C1C2C3121.4°119.7°
C1C2H119.3°120.2°
C1CO1117.7°120.0°
C1CO117.8°120.0°
C2C3C7120.8°120.0°
C3C2H119.3°120.1°
C3C7C12121.0°120.1°
C3C7C8121.1°120.2°
O1CO124.5°120.0°
COH8109.5°117.0°
C12C7C8117.9°119.8°
C7C12C11121.2°119.9°
C7C12H7119.4°120.0°
C7C8C9121.4°119.9°
C7C8H4119.3°120.0°
C12C11C10118.4°120.1°
C12C11H6120.8°120.0°
C11C12H7119.4°120.1°
C8C9C10118.3°120.1°
C9C8H4119.3°120.0°
C8C9H5120.8°119.9°
C11C10C9122.8°120.2°
C11C10F118.6°119.9°
C10C11H6120.8°119.9°
C9C10F118.6°119.9°
C10C9H5120.9°120.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C6C5C4H2180.0°179.4°
C5C6C1H3180.0°179.4°
C6C5C4C30.2°0.3°
C5C6C1C20.2°0.6°
C5C6C1C179.5°179.7°
C6C5C4H1179.9°179.7°
C4C5C6C10.0°0.6°
C5C4C3H1180.0°180.0°
C5C4C3C20.1°0.0°
C5C4C3C7179.8°179.9°
C4C5C6H3180.0°179.9°
C6C1C2C179.7°179.7°
C6C1C2C30.2°0.2°
C6C1CO154.2°180.0°
C6C1CO125.6°0.3°
C6C1C2H179.8°179.8°
C1C6C5H2180.0°180.0°
C4C3C2C10.1°0.0°
C4C3C2C7179.9°179.9°
C4C3C7C1294.9°0.1°
C4C3C7C885.5°180.0°
C4C3C2H179.9°180.0°
C3C4C5H2179.8°179.7°
C1C2C3H180.0°180.0°
C1C2C3C7180.0°180.0°
C2C1CO1126.2°0.3°
C2C1CO54.0°180.0°
C2C1C6H3179.8°180.0°
CC1C2C3179.5°180.0°
C1CO1O179.8°179.7°
C1COH8179.8°180.0°
CC1C2H0.6°0.0°
CC1C6H30.5°0.3°
C2C3C7C1285.0°180.0°
C2C3C7C894.6°0.1°
C2C3C4H1179.9°180.0°
C3C7C12C8179.6°179.9°
C3C7C12C11179.6°180.0°
C3C7C8C9179.5°179.7°
C3C7C12H70.4°0.1°
C7C3C2H0.0°0.0°
C7C3C4H10.2°0.1°
C3C7C8H40.5°0.1°
O1COH80.0°0.3°
C7C12C11H7180.0°179.9°
C12C7C8C90.0°0.2°
C7C12C11C100.0°0.0°
C7C12C11H6179.9°179.9°
C12C7C8H4180.0°180.0°
C8C7C12C110.0°0.0°
C7C8C9H4180.0°179.8°
C7C8C9C100.1°0.6°
C8C7C12H7180.0°180.0°
C7C8C9H5179.9°180.0°
C12C11C10H6180.0°179.9°
C12C11C10C90.1°0.3°
C12C11C10F179.9°180.0°
C8C9C10C110.1°0.6°
C8C9C10H5180.0°179.4°
C8C9C10F179.9°179.7°
C11C10C9F180.0°179.7°
C10C11C12H7180.0°179.9°
C11C10C9H5179.9°180.0°
C9C10C11H6179.9°179.7°
C10C9C8H4179.9°179.7°
FC10C11H60.1°0.1°
FC10C9H50.1°0.3°
H6C11C12H70.1°0.0°
H1C4C5H20.1°0.3°
H2C5C6H30.0°0.6°
H4C8C9H50.1°0.3°

247947

PDB entries from 2026-01-21

PDB statisticsPDBj update infoContact PDBjnumon