English 日本語简体中文繁體中文 한국어

✖

Menu

RCSB PDB PDBe BMRB Adv. Search Search help

Summary Geometry Related PDB entries

S0W

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
O1	C2	sing	1.34Å	1.25Å
C2	O3	doub	1.21Å	1.25Å
C2	C4	sing	1.51Å	1.52Å
C4	C5	sing	1.53Å	1.51Å
C5	C6	sing	1.51Å	1.51Å
C6	C7	sing	1.38Å	1.39Å	Aromatic
C6	C12	doub	1.38Å	1.39Å	Aromatic
C7	C8	doub	1.38Å	1.38Å	Aromatic
C8	C9	sing	1.38Å	1.37Å	Aromatic
C9	CL1	sing	1.74Å	1.74Å
C9	C11	doub	1.38Å	1.38Å	Aromatic
C11	C12	sing	1.38Å	1.38Å	Aromatic
O1	H1	sing	0.97Å	0.95Å
C4	H41C	sing	1.09Å	1.10Å
C4	H42C	sing	1.09Å	1.10Å
C5	H51C	sing	1.09Å	1.10Å
C5	H52C	sing	1.09Å	1.10Å
C7	H7	sing	1.08Å	1.08Å
C12	H12	sing	1.08Å	1.08Å
C8	H8	sing	1.08Å	1.08Å
C11	H11	sing	1.08Å	1.08Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O1	C2	O3	125.1°	120.0°
O1	C2	C4	117.7°	120.0°
C2	O1	H1	109.5°	117.0°
O3	C2	C4	117.2°	120.0°
C2	C4	C5	113.0°	109.5°
C2	C4	H41C	108.6°	109.5°
C2	C4	H42C	108.6°	109.5°
C4	C5	C6	113.3°	109.5°
C5	C4	H41C	108.6°	109.4°
C5	C4	H42C	108.6°	109.4°
C4	C5	H51C	108.5°	109.5°
C4	C5	H52C	108.5°	109.5°
C5	C6	C7	120.3°	120.0°
C5	C6	C12	120.8°	120.0°
C6	C5	H51C	108.5°	109.5°
C6	C5	H52C	108.5°	109.4°
C7	C6	C12	118.9°	120.0°
C6	C7	C8	120.6°	120.0°
C6	C7	H7	119.7°	120.0°
C6	C12	C11	120.5°	120.1°
C6	C12	H12	119.7°	120.0°
C7	C8	C9	119.6°	120.0°
C8	C7	H7	119.7°	120.0°
C7	C8	H8	120.2°	120.0°
C8	C9	CL1	119.5°	120.0°
C8	C9	C11	121.0°	120.0°
C9	C8	H8	120.2°	120.0°
CL1	C9	C11	119.5°	120.0°
C9	C11	C12	119.4°	119.9°
C9	C11	H11	120.3°	120.0°
C11	C12	H12	119.7°	119.9°
C12	C11	H11	120.3°	120.1°
H41C	C4	H42C	109.5°	109.4°
H51C	C5	H52C	109.5°	109.4°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O1	C2	O3	C4	180.0°	179.9°
O1	C2	C4	C5	95.7°	180.0°
O1	C2	C4	H41C	143.7°	60.1°
O1	C2	C4	H42C	24.8°	59.9°
O3	C2	C4	C5	84.3°	0.0°
O3	C2	O1	H1	0.0°	0.1°
O3	C2	C4	H41C	36.2°	120.0°
O3	C2	C4	H42C	155.2°	120.0°
C2	C4	C5	H41C	120.5°	120.0°
C2	C4	C5	H42C	120.5°	120.1°
C2	C4	C5	C6	179.5°	180.0°
C4	C2	O1	H1	180.0°	180.0°
C2	C4	H41C	H42C	118.4°	120.1°
C2	C4	C5	H51C	59.9°	60.0°
C2	C4	C5	H52C	58.9°	60.0°
C4	C5	C6	H51C	120.6°	120.1°
C4	C5	C6	H52C	120.6°	120.0°
C4	C5	C6	C7	71.2°	90.0°
C4	C5	C6	C12	108.8°	90.3°
C5	C4	H41C	H42C	118.4°	119.9°
C4	C5	H51C	H52C	118.2°	120.0°
C5	C6	C7	C12	180.0°	179.7°
C5	C6	C7	C8	180.0°	180.0°
C5	C6	C12	C11	179.9°	179.7°
C6	C5	C4	H41C	59.0°	59.9°
C6	C5	C4	H42C	60.0°	60.0°
C6	C5	H51C	H52C	118.2°	119.9°
C5	C6	C7	H7	0.0°	0.0°
C5	C6	C12	H12	0.1°	0.1°
C6	C7	C8	H7	180.0°	180.0°
C6	C7	C8	C9	0.0°	0.0°
C7	C6	C12	C11	0.1°	0.6°
C7	C6	C5	H51C	168.2°	30.1°
C7	C6	C5	H52C	49.4°	150.0°
C7	C6	C12	H12	179.9°	179.8°
C6	C7	C8	H8	180.0°	179.9°
C12	C6	C7	C8	0.0°	0.3°
C6	C12	C11	C9	0.1°	0.6°
C6	C12	C11	H12	180.0°	179.7°
C12	C6	C5	H51C	11.8°	149.6°
C12	C6	C5	H52C	130.6°	29.7°
C12	C6	C7	H7	180.0°	179.7°
C6	C12	C11	H11	179.9°	179.7°
C7	C8	C9	H8	180.0°	180.0°
C7	C8	C9	CL1	180.0°	180.0°
C7	C8	C9	C11	0.1°	0.0°
C8	C9	CL1	C11	179.9°	180.0°
C8	C9	C11	C12	0.1°	0.3°
C9	C8	C7	H7	180.0°	180.0°
C8	C9	C11	H11	179.9°	180.0°
CL1	C9	C11	C12	180.0°	179.7°
CL1	C9	C8	H8	0.0°	0.1°
CL1	C9	C11	H11	0.0°	0.0°
C9	C11	C12	H11	180.0°	179.7°
C9	C11	C12	H12	179.9°	179.8°
C11	C9	C8	H8	179.9°	179.9°
H41C	C4	C5	H51C	179.5°	180.0°
H41C	C4	C5	H52C	61.6°	60.1°
H42C	C4	C5	H51C	60.6°	60.1°
H42C	C4	C5	H52C	179.4°	180.0°
H7	C7	C8	H8	0.0°	0.0°
H12	C12	C11	H11	0.2°	0.1°

222415

PDB entries from 2024-07-10

PDB statistics

PDBj update info

Contact PDBj

numon