RZM
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| O6 | C6 | sing | 1.43Å | 1.42Å | |
| O4 | C4 | sing | 1.43Å | 1.46Å | |
| C4 | C5 | sing | 1.53Å | 1.50Å | |
| C4 | C3 | sing | 1.53Å | 1.48Å | |
| C6 | C5 | sing | 1.53Å | 1.50Å | |
| O3 | C3 | sing | 1.43Å | 1.46Å | |
| C5 | O5 | sing | 1.43Å | 1.48Å | |
| O5 | C1 | sing | 1.43Å | 1.47Å | |
| C3 | C2 | sing | 1.53Å | 1.49Å | |
| C2 | C1 | sing | 1.53Å | 1.50Å | |
| C2 | O2 | sing | 1.43Å | 1.45Å | |
| C1 | O1 | sing | 1.43Å | 1.40Å | |
| O1 | C4' | sing | 1.43Å | 1.47Å | |
| O3' | C3' | sing | 1.43Å | 1.51Å | |
| C4' | C3' | sing | 1.55Å | 1.25Å | |
| C4' | C5' | sing | 1.54Å | 1.67Å | |
| O6' | C6' | sing | 1.43Å | 1.43Å | |
| C3' | C2' | sing | 1.55Å | 1.60Å | |
| C6' | C5' | sing | 1.53Å | 1.53Å | |
| C5' | N5' | sing | 1.47Å | 1.31Å | |
| C2' | N5' | sing | 1.48Å | 1.53Å | |
| C2' | C1' | sing | 1.53Å | 1.39Å | |
| C1' | O1' | sing | 1.43Å | 1.45Å | |
| O6' | H1A | sing | 0.97Å | 0.95Å | |
| C6' | H2A | sing | 1.09Å | 1.10Å | |
| C6' | H3A | sing | 1.09Å | 1.10Å | |
| C5' | H4A | sing | 1.09Å | 1.10Å | |
| C2' | H5A | sing | 1.09Å | 1.10Å | |
| C1' | H6 | sing | 1.09Å | 1.10Å | |
| C1' | H7 | sing | 1.09Å | 1.10Å | |
| O1' | H8 | sing | 0.97Å | 0.95Å | |
| C3' | H9 | sing | 1.09Å | 1.10Å | |
| O3' | H10 | sing | 0.97Å | 0.95Å | |
| C4' | H11 | sing | 1.09Å | 1.10Å | |
| C1 | H1 | sing | 1.09Å | 1.10Å | |
| C2 | H2 | sing | 1.09Å | 1.10Å | |
| O2 | HO2 | sing | 0.97Å | 0.95Å | |
| C3 | H3 | sing | 1.09Å | 1.10Å | |
| O3 | HO3 | sing | 0.97Å | 0.95Å | |
| C4 | H4 | sing | 1.09Å | 1.10Å | |
| O4 | HO4 | sing | 0.97Å | 0.95Å | |
| C5 | H5 | sing | 1.09Å | 1.10Å | |
| C6 | H61 | sing | 1.09Å | 1.10Å | |
| C6 | H62 | sing | 1.09Å | 1.10Å | |
| O6 | HO6 | sing | 0.97Å | 0.95Å | |
| N5' | H23 | sing | 1.01Å | 1.00Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O6 | C6 | C5 | 109.5° | 109.5° |
| O6 | C6 | H61 | 109.5° | 109.5° |
| O6 | C6 | H62 | 109.5° | 109.5° |
| C6 | O6 | HO6 | 109.5° | 114.0° |
| O4 | C4 | C5 | 111.1° | 109.6° |
| O4 | C4 | C3 | 110.1° | 109.5° |
| O4 | C4 | H4 | 109.9° | 109.6° |
| C4 | O4 | HO4 | 109.5° | 114.1° |
| C5 | C4 | C3 | 107.0° | 109.2° |
| C4 | C5 | C6 | 114.4° | 109.5° |
| C4 | C5 | O5 | 111.6° | 109.4° |
| C5 | C4 | H4 | 109.2° | 109.5° |
| C4 | C5 | H5 | 107.1° | 109.5° |
| C4 | C3 | O3 | 110.3° | 109.6° |
| C4 | C3 | C2 | 109.2° | 109.0° |
| C4 | C3 | H3 | 108.1° | 109.5° |
| C3 | C4 | H4 | 109.5° | 109.5° |
| C6 | C5 | O5 | 108.8° | 109.5° |
| C6 | C5 | H5 | 107.2° | 109.5° |
| C5 | C6 | H61 | 109.5° | 109.5° |
| C5 | C6 | H62 | 109.5° | 109.5° |
| O3 | C3 | C2 | 112.7° | 109.5° |
| O3 | C3 | H3 | 108.4° | 109.6° |
| C3 | O3 | HO3 | 109.5° | 113.9° |
| C5 | O5 | C1 | 109.7° | 114.1° |
| O5 | C5 | H5 | 107.4° | 109.5° |
| O5 | C1 | C2 | 112.0° | 109.4° |
| O5 | C1 | O1 | 109.7° | 109.5° |
| O5 | C1 | H1 | 109.2° | 109.5° |
| C3 | C2 | C1 | 110.1° | 109.2° |
| C3 | C2 | O2 | 112.8° | 109.5° |
| C3 | C2 | H2 | 108.6° | 109.5° |
| C2 | C3 | H3 | 108.0° | 109.5° |
| C1 | C2 | O2 | 107.7° | 109.5° |
| C2 | C1 | O1 | 106.9° | 109.5° |
| C2 | C1 | H1 | 108.9° | 109.5° |
| C1 | C2 | H2 | 108.4° | 109.5° |
| O2 | C2 | H2 | 109.1° | 109.6° |
| C2 | O2 | HO2 | 109.5° | 114.0° |
| C1 | O1 | C4' | 109.7° | 114.0° |
| O1 | C1 | H1 | 110.2° | 109.5° |
| O1 | C4' | C3' | 114.6° | 110.7° |
| O1 | C4' | C5' | 110.4° | 110.7° |
| O1 | C4' | H11 | 109.4° | 110.8° |
| O3' | C3' | C4' | 113.3° | 111.0° |
| O3' | C3' | C2' | 107.6° | 111.0° |
| O3' | C3' | H9 | 110.3° | 110.9° |
| C3' | O3' | H10 | 109.5° | 114.0° |
| C3' | C4' | C5' | 101.7° | 103.0° |
| C4' | C3' | C2' | 101.0° | 101.7° |
| C4' | C3' | H9 | 114.7° | 111.0° |
| C3' | C4' | H11 | 113.0° | 110.7° |
| C4' | C5' | C6' | 111.2° | 109.9° |
| C4' | C5' | N5' | 103.5° | 107.2° |
| C4' | C5' | H4A | 107.6° | 110.0° |
| C5' | C4' | H11 | 107.1° | 110.7° |
| O6' | C6' | C5' | 113.7° | 109.5° |
| C6' | O6' | H1A | 109.5° | 114.0° |
| O6' | C6' | H2A | 108.4° | 109.5° |
| O6' | C6' | H3A | 108.4° | 109.4° |
| C3' | C2' | N5' | 104.1° | 104.8° |
| C3' | C2' | C1' | 112.7° | 110.4° |
| C3' | C2' | H5A | 108.0° | 110.5° |
| C2' | C3' | H9 | 109.2° | 111.0° |
| C6' | C5' | N5' | 112.1° | 109.9° |
| C5' | C6' | H2A | 108.4° | 109.5° |
| C5' | C6' | H3A | 108.4° | 109.5° |
| C6' | C5' | H4A | 109.4° | 109.9° |
| C5' | N5' | C2' | 105.1° | 108.6° |
| N5' | C5' | H4A | 112.8° | 109.9° |
| C5' | N5' | H23 | 110.6° | 110.9° |
| N5' | C2' | C1' | 112.1° | 110.4° |
| N5' | C2' | H5A | 108.7° | 110.4° |
| C2' | N5' | H23 | 110.5° | 111.0° |
| C2' | C1' | O1' | 105.1° | 109.5° |
| C1' | C2' | H5A | 110.9° | 110.3° |
| C2' | C1' | H6 | 110.6° | 109.5° |
| C2' | C1' | H7 | 110.6° | 109.5° |
| O1' | C1' | H6 | 110.5° | 109.5° |
| O1' | C1' | H7 | 110.5° | 109.5° |
| C1' | O1' | H8 | 109.5° | 114.0° |
| H2A | C6' | H3A | 109.5° | 109.5° |
| H6 | C1' | H7 | 109.5° | 109.5° |
| H61 | C6 | H62 | 109.5° | 109.4° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O6 | C6 | C5 | C4 | 78.1° | 175.0° |
| O6 | C6 | C5 | H61 | 120.0° | 120.0° |
| O6 | C6 | C5 | H62 | 120.0° | 120.0° |
| O6 | C6 | C5 | O5 | 47.4° | 65.1° |
| O6 | C6 | C5 | H5 | 163.2° | 55.0° |
| O6 | C6 | H61 | H62 | 120.0° | 120.0° |
| O4 | C4 | C5 | C3 | 120.2° | 119.9° |
| O4 | C4 | C5 | H4 | 121.3° | 120.2° |
| O4 | C4 | C3 | H4 | 120.9° | 120.1° |
| O4 | C4 | C5 | C6 | 53.8° | 62.5° |
| O4 | C4 | C3 | O3 | 52.1° | 63.2° |
| O4 | C4 | C5 | O5 | 177.9° | 177.5° |
| O4 | C4 | C3 | C2 | 176.5° | 176.9° |
| O4 | C4 | C3 | H3 | 66.2° | 57.1° |
| O4 | C4 | C5 | H5 | 64.9° | 57.5° |
| C5 | C4 | C3 | H4 | 118.2° | 119.9° |
| C4 | C5 | C6 | O5 | 125.5° | 120.0° |
| C4 | C5 | C6 | H5 | 118.6° | 120.0° |
| C5 | C4 | C3 | O3 | 173.0° | 176.8° |
| C4 | C5 | O5 | H5 | 117.1° | 120.0° |
| C4 | C5 | O5 | C1 | 57.2° | 61.2° |
| C5 | C4 | C3 | C2 | 62.7° | 56.9° |
| C5 | C4 | C3 | H3 | 54.6° | 62.9° |
| C5 | C4 | O4 | HO4 | 180.0° | 179.9° |
| C4 | C5 | C6 | H61 | 41.9° | 54.9° |
| C4 | C5 | C6 | H62 | 161.9° | 65.0° |
| C3 | C4 | C5 | C6 | 174.1° | 177.6° |
| C4 | C3 | O3 | C2 | 122.3° | 119.6° |
| C4 | C3 | O3 | H3 | 118.1° | 120.2° |
| C3 | C4 | C5 | O5 | 61.9° | 57.6° |
| C4 | C3 | C2 | H3 | 117.3° | 119.8° |
| C4 | C3 | C2 | C1 | 60.7° | 57.0° |
| C4 | C3 | C2 | O2 | 178.9° | 176.9° |
| C4 | C3 | C2 | H2 | 57.8° | 63.0° |
| C4 | C3 | O3 | HO3 | 180.0° | 179.6° |
| C3 | C4 | O4 | HO4 | 61.7° | 60.3° |
| C3 | C4 | C5 | H5 | 55.4° | 62.4° |
| C6 | C5 | O5 | H5 | 115.7° | 120.0° |
| C6 | C5 | O5 | C1 | 175.6° | 178.8° |
| C6 | C5 | C4 | H4 | 67.5° | 57.7° |
| C5 | C6 | H61 | H62 | 120.0° | 120.0° |
| C5 | C6 | O6 | HO6 | 180.0° | 180.0° |
| O3 | C3 | C2 | H3 | 119.8° | 120.2° |
| O3 | C3 | C2 | C1 | 176.4° | 176.9° |
| O3 | C3 | C2 | O2 | 56.0° | 63.2° |
| O3 | C3 | C2 | H2 | 65.0° | 57.0° |
| O3 | C3 | C4 | H4 | 68.8° | 56.9° |
| C5 | O5 | C1 | C2 | 53.5° | 61.2° |
| C5 | O5 | C1 | O1 | 64.9° | 58.8° |
| C5 | O5 | C1 | H1 | 174.2° | 178.9° |
| O5 | C5 | C4 | H4 | 56.5° | 62.3° |
| O5 | C5 | C6 | H61 | 167.4° | 174.9° |
| O5 | C5 | C6 | H62 | 72.6° | 54.9° |
| O5 | C1 | C2 | C3 | 56.0° | 57.6° |
| O5 | C1 | C2 | O1 | 120.1° | 120.0° |
| O5 | C1 | C2 | H1 | 120.8° | 120.0° |
| O5 | C1 | C2 | O2 | 179.4° | 177.5° |
| O5 | C1 | O1 | H1 | 120.2° | 120.0° |
| O5 | C1 | O1 | C4' | 89.4° | 70.1° |
| O5 | C1 | C2 | H2 | 62.7° | 62.3° |
| C1 | O5 | C5 | H5 | 59.9° | 58.8° |
| C3 | C2 | C1 | O2 | 123.4° | 119.9° |
| C3 | C2 | C1 | H2 | 118.7° | 119.9° |
| C3 | C2 | O2 | H2 | 120.7° | 120.1° |
| C3 | C2 | C1 | O1 | 64.1° | 62.3° |
| C3 | C2 | C1 | H1 | 176.8° | 177.6° |
| C3 | C2 | O2 | HO2 | 180.0° | 179.7° |
| C2 | C3 | O3 | HO3 | 57.7° | 60.1° |
| C2 | C3 | C4 | H4 | 55.5° | 63.0° |
| C1 | C2 | O2 | H2 | 117.5° | 120.2° |
| C2 | C1 | O1 | H1 | 118.2° | 120.0° |
| C2 | C1 | O1 | C4' | 149.1° | 170.0° |
| C1 | C2 | O2 | HO2 | 58.2° | 60.1° |
| C1 | C2 | C3 | H3 | 56.6° | 62.9° |
| O2 | C2 | C1 | O1 | 59.3° | 57.5° |
| O2 | C2 | C1 | H1 | 59.8° | 62.5° |
| O2 | C2 | C3 | H3 | 63.8° | 57.0° |
| C1 | O1 | C4' | C3' | 90.0° | 91.4° |
| C1 | O1 | C4' | C5' | 155.8° | 155.0° |
| C1 | O1 | C4' | H11 | 38.2° | 31.8° |
| O1 | C1 | C2 | H2 | 177.2° | 177.7° |
| O1 | C4' | C3' | O3' | 81.4° | 87.8° |
| O1 | C4' | C3' | C5' | 119.2° | 118.4° |
| O1 | C4' | C3' | H11 | 126.3° | 123.3° |
| O1 | C4' | C5' | H11 | 119.1° | 123.2° |
| O1 | C4' | C3' | C2' | 163.8° | 154.0° |
| O1 | C4' | C5' | C6' | 66.8° | 99.9° |
| O1 | C4' | C5' | N5' | 172.7° | 140.7° |
| O1 | C4' | C5' | H4A | 53.1° | 21.2° |
| O1 | C4' | C3' | H9 | 46.5° | 36.0° |
| C4' | O1 | C1 | H1 | 30.8° | 50.0° |
| O3' | C3' | C4' | C2' | 114.8° | 118.1° |
| O3' | C3' | C4' | H9 | 128.0° | 123.8° |
| O3' | C3' | C4' | C5' | 159.4° | 153.8° |
| O3' | C3' | C2' | H9 | 119.7° | 123.8° |
| O3' | C3' | C2' | N5' | 150.5° | 155.2° |
| O3' | C3' | C2' | C1' | 87.8° | 85.9° |
| O3' | C3' | C2' | H5A | 35.0° | 36.3° |
| O3' | C3' | C4' | H11 | 44.9° | 35.4° |
| C3' | C4' | C5' | H11 | 118.8° | 118.3° |
| C4' | C3' | C2' | H9 | 121.3° | 118.1° |
| C3' | C4' | C5' | C6' | 171.1° | 141.7° |
| C3' | C4' | C5' | N5' | 50.6° | 22.3° |
| C4' | C3' | C2' | N5' | 31.5° | 37.0° |
| C4' | C3' | C2' | C1' | 153.2° | 155.9° |
| C3' | C4' | C5' | H4A | 69.1° | 97.3° |
| C4' | C3' | C2' | H5A | 84.0° | 81.8° |
| C4' | C3' | O3' | H10 | 180.0° | 173.7° |
| C4' | C5' | C6' | O6' | 61.9° | 175.7° |
| C5' | C4' | C3' | C2' | 44.6° | 35.6° |
| C4' | C5' | C6' | N5' | 115.3° | 117.8° |
| C4' | C5' | C6' | H4A | 118.8° | 121.2° |
| C4' | C5' | N5' | H4A | 116.0° | 119.6° |
| C4' | C5' | N5' | C2' | 26.2° | 1.0° |
| C4' | C5' | C6' | H2A | 58.7° | 64.2° |
| C4' | C5' | C6' | H3A | 177.4° | 55.8° |
| C5' | C4' | C3' | H9 | 72.6° | 82.5° |
| C4' | C5' | N5' | H23 | 145.5° | 121.3° |
| O6' | C6' | C5' | H2A | 120.6° | 120.0° |
| O6' | C6' | C5' | H3A | 120.6° | 120.0° |
| O6' | C6' | C5' | N5' | 53.4° | 66.5° |
| O6' | C6' | H2A | H3A | 118.1° | 119.9° |
| O6' | C6' | C5' | H4A | 179.3° | 54.5° |
| C3' | C2' | N5' | C5' | 2.1° | 24.1° |
| C3' | C2' | N5' | C1' | 122.1° | 118.9° |
| C3' | C2' | N5' | H5A | 114.9° | 118.9° |
| C3' | C2' | C1' | H5A | 121.1° | 122.4° |
| C3' | C2' | C1' | O1' | 140.2° | 178.2° |
| C3' | C2' | C1' | H6 | 20.9° | 58.1° |
| C3' | C2' | C1' | H7 | 100.6° | 61.8° |
| C2' | C3' | O3' | H10 | 69.2° | 61.4° |
| C2' | C3' | C4' | H11 | 69.9° | 82.7° |
| C3' | C2' | N5' | H23 | 121.4° | 98.1° |
| C6' | C5' | N5' | H4A | 124.0° | 121.0° |
| C6' | C5' | N5' | C2' | 146.2° | 118.4° |
| C5' | C6' | O6' | H1A | 180.0° | 180.0° |
| C5' | C6' | H2A | H3A | 118.1° | 120.0° |
| C6' | C5' | C4' | H11 | 52.3° | 23.3° |
| C6' | C5' | N5' | H23 | 94.5° | 119.3° |
| C5' | N5' | C2' | H23 | 119.3° | 122.2° |
| C5' | N5' | C2' | C1' | 120.0° | 142.9° |
| N5' | C5' | C6' | H2A | 174.0° | 53.5° |
| N5' | C5' | C6' | H3A | 67.2° | 173.5° |
| C5' | N5' | C2' | H5A | 117.1° | 94.9° |
| N5' | C5' | C4' | H11 | 68.2° | 96.1° |
| N5' | C2' | C1' | H5A | 121.7° | 122.2° |
| N5' | C2' | C1' | O1' | 102.7° | 66.4° |
| C2' | N5' | C5' | H4A | 89.8° | 120.6° |
| N5' | C2' | C1' | H6 | 138.0° | 173.6° |
| N5' | C2' | C1' | H7 | 16.6° | 53.6° |
| N5' | C2' | C3' | H9 | 89.8° | 81.0° |
| C2' | C1' | O1' | H6 | 119.3° | 120.0° |
| C2' | C1' | O1' | H7 | 119.3° | 120.0° |
| C2' | C1' | H6 | H7 | 122.0° | 120.0° |
| C2' | C1' | O1' | H8 | 180.0° | 180.0° |
| C1' | C2' | C3' | H9 | 32.0° | 37.8° |
| C1' | C2' | N5' | H23 | 0.7° | 20.7° |
| O1' | C1' | C2' | H5A | 19.0° | 55.8° |
| O1' | C1' | H6 | H7 | 122.0° | 120.0° |
| H1A | O6' | C6' | H2A | 59.4° | 59.9° |
| H1A | O6' | C6' | H3A | 59.4° | 60.0° |
| H2A | C6' | C5' | H4A | 60.1° | 174.6° |
| H3A | C6' | C5' | H4A | 58.7° | 65.4° |
| H4A | C5' | C4' | H11 | 172.1° | 144.4° |
| H4A | C5' | N5' | H23 | 29.5° | 1.7° |
| H5A | C2' | C1' | H6 | 100.3° | 64.2° |
| H5A | C2' | C1' | H7 | 138.3° | 175.8° |
| H5A | C2' | C3' | H9 | 154.7° | 160.1° |
| H5A | C2' | N5' | H23 | 123.6° | 142.9° |
| H6 | C1' | O1' | H8 | 60.7° | 60.0° |
| H7 | C1' | O1' | H8 | 60.7° | 60.0° |
| H9 | C3' | O3' | H10 | 49.8° | 62.4° |
| H9 | C3' | C4' | H11 | 172.9° | 159.2° |
| H1 | C1 | C2 | H2 | 58.1° | 57.7° |
| H2 | C2 | O2 | HO2 | 59.3° | 60.1° |
| H2 | C2 | C3 | H3 | 175.2° | 177.2° |
| H3 | C3 | O3 | HO3 | 61.9° | 60.1° |
| H3 | C3 | C4 | H4 | 172.9° | 177.2° |
| H4 | C4 | O4 | HO4 | 59.0° | 59.7° |
| H4 | C4 | C5 | H5 | 173.8° | 177.7° |
| H5 | C5 | C6 | H61 | 76.8° | 65.0° |
| H5 | C5 | C6 | H62 | 43.3° | 175.0° |
| H61 | C6 | O6 | HO6 | 60.0° | 60.0° |
| H62 | C6 | O6 | HO6 | 60.0° | 60.0° |
