RYY
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| C1' | N | sing | 1.46Å | 1.47Å | |
| N | C7 | sing | 1.35Å | 1.36Å | |
| N | HN | sing | 0.97Å | 1.00Å | |
| C4 | S | sing | 1.76Å | 1.67Å | |
| N3S | S | sing | 1.66Å | 1.47Å | |
| S | O2S | doub | 1.42Å | 1.48Å | |
| S | O1S | doub | 1.42Å | 1.66Å | |
| C7 | C1 | sing | 1.48Å | 1.47Å | |
| C1 | C6 | doub | 1.40Å | 1.37Å | Aromatic |
| C1 | C2 | sing | 1.40Å | 1.37Å | Aromatic |
| C2 | C3 | doub | 1.38Å | 1.40Å | Aromatic |
| C2 | H2 | sing | 1.08Å | 1.08Å | |
| C3 | C4 | sing | 1.38Å | 1.40Å | Aromatic |
| C3 | H3 | sing | 1.08Å | 1.08Å | |
| C5 | C4 | doub | 1.38Å | 1.43Å | Aromatic |
| C6 | C5 | sing | 1.38Å | 1.36Å | Aromatic |
| C5 | H5 | sing | 1.08Å | 1.08Å | |
| C6 | H6 | sing | 1.08Å | 1.08Å | |
| O7 | C7 | doub | 1.22Å | 1.20Å | |
| C2' | C1' | sing | 1.53Å | 1.55Å | |
| C1' | H1' | sing | 1.09Å | 1.10Å | |
| C1' | H1'A | sing | 1.09Å | 1.10Å | |
| C16 | C2' | sing | 1.53Å | 1.53Å | |
| C16 | H16 | sing | 1.09Å | 1.10Å | |
| C16 | H16A | sing | 1.09Å | 1.10Å | |
| C16 | H16B | sing | 1.09Å | 1.10Å | |
| C2' | H2' | sing | 1.09Å | 1.10Å | |
| C2' | H2'A | sing | 1.09Å | 1.10Å | |
| N3S | HN3S | sing | 0.97Å | 1.00Å | |
| N3S | HN3A | sing | 0.97Å | 1.00Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| C1' | N | C7 | 125.7° | 120.0° |
| C1' | N | HN | 117.2° | 120.0° |
| N | C1' | C2' | 104.7° | 109.5° |
| N | C1' | H1' | 111.1° | 109.5° |
| N | C1' | H1'A | 111.1° | 109.5° |
| C7 | N | HN | 117.1° | 119.9° |
| N | C7 | C1 | 123.1° | 120.0° |
| N | C7 | O7 | 120.9° | 120.0° |
| C4 | S | N3S | 105.3° | 107.2° |
| C4 | S | O2S | 104.1° | 106.4° |
| C4 | S | O1S | 115.3° | 106.4° |
| S | C4 | C3 | 119.8° | 119.8° |
| S | C4 | C5 | 126.4° | 119.8° |
| N3S | S | O2S | 118.6° | 106.5° |
| N3S | S | O1S | 105.9° | 106.5° |
| S | N3S | HN3S | 109.5° | 119.9° |
| S | N3S | HN3A | 109.5° | 120.0° |
| O2S | S | O1S | 108.1° | 123.1° |
| C7 | C1 | C6 | 123.7° | 120.2° |
| C7 | C1 | C2 | 120.1° | 120.1° |
| C1 | C7 | O7 | 115.9° | 120.0° |
| C6 | C1 | C2 | 116.1° | 119.7° |
| C1 | C6 | C5 | 124.5° | 119.8° |
| C1 | C6 | H6 | 117.7° | 120.0° |
| C1 | C2 | C3 | 120.9° | 119.8° |
| C1 | C2 | H2 | 119.6° | 120.1° |
| C3 | C2 | H2 | 119.5° | 120.1° |
| C2 | C3 | C4 | 123.5° | 120.2° |
| C2 | C3 | H3 | 118.3° | 119.9° |
| C4 | C3 | H3 | 118.3° | 119.9° |
| C3 | C4 | C5 | 113.7° | 120.3° |
| C4 | C5 | C6 | 121.0° | 120.2° |
| C4 | C5 | H5 | 119.5° | 120.0° |
| C6 | C5 | H5 | 119.5° | 119.9° |
| C5 | C6 | H6 | 117.7° | 120.1° |
| C2' | C1' | H1' | 111.1° | 109.5° |
| C2' | C1' | H1'A | 111.1° | 109.4° |
| C1' | C2' | C16 | 114.2° | 109.5° |
| C1' | C2' | H2' | 107.9° | 109.5° |
| C1' | C2' | H2'A | 107.9° | 109.4° |
| H1' | C1' | H1'A | 107.8° | 109.4° |
| C2' | C16 | H16 | 109.5° | 109.5° |
| C2' | C16 | H16A | 109.4° | 109.4° |
| C2' | C16 | H16B | 109.5° | 109.4° |
| C16 | C2' | H2' | 107.9° | 109.5° |
| C16 | C2' | H2'A | 107.9° | 109.5° |
| H16 | C16 | H16A | 109.5° | 109.5° |
| H16 | C16 | H16B | 109.4° | 109.5° |
| H16A | C16 | H16B | 109.5° | 109.5° |
| H2' | C2' | H2'A | 111.0° | 109.5° |
| HN3S | N3S | HN3A | 109.5° | 120.1° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| C1' | N | C7 | HN | 180.0° | 179.8° |
| C1' | N | C7 | C1 | 175.9° | 179.8° |
| C1' | N | C7 | O7 | 1.7° | 0.1° |
| N | C1' | C2' | H1' | 120.0° | 120.1° |
| N | C1' | C2' | H1'A | 120.0° | 120.0° |
| N | C1' | H1' | H1'A | 122.0° | 120.0° |
| N | C1' | C2' | C16 | 62.1° | 180.0° |
| N | C1' | C2' | H2' | 57.8° | 59.9° |
| N | C1' | C2' | H2'A | 177.9° | 60.0° |
| N | C7 | C1 | O7 | 177.7° | 179.9° |
| N | C7 | C1 | C6 | 0.3° | 179.9° |
| N | C7 | C1 | C2 | 175.6° | 0.2° |
| C7 | N | C1' | C2' | 108.7° | 180.0° |
| C7 | N | C1' | H1' | 131.3° | 59.9° |
| C7 | N | C1' | H1'A | 11.3° | 60.1° |
| HN | N | C7 | C1 | 4.2° | 0.1° |
| HN | N | C7 | O7 | 178.3° | 180.0° |
| HN | N | C1' | C2' | 71.4° | 0.2° |
| HN | N | C1' | H1' | 48.6° | 120.3° |
| HN | N | C1' | H1'A | 168.6° | 119.8° |
| C4 | S | N3S | O2S | 115.9° | 113.5° |
| C4 | S | N3S | O1S | 122.6° | 113.5° |
| C4 | S | O2S | O1S | 123.1° | 122.9° |
| S | C4 | C3 | C2 | 176.4° | 180.0° |
| S | C4 | C3 | C5 | 179.7° | 180.0° |
| S | C4 | C3 | H3 | 3.6° | 0.1° |
| S | C4 | C5 | C6 | 179.9° | 180.0° |
| S | C4 | C5 | H5 | 0.2° | 0.0° |
| C4 | S | N3S | HN3S | 180.0° | 120.0° |
| C4 | S | N3S | HN3A | 60.0° | 60.0° |
| N3S | S | O2S | O1S | 120.4° | 123.0° |
| N3S | S | C4 | C3 | 154.1° | 90.0° |
| N3S | S | C4 | C5 | 25.5° | 90.0° |
| S | N3S | HN3S | HN3A | 120.0° | 180.0° |
| O2S | S | C4 | C3 | 28.7° | 23.6° |
| O2S | S | C4 | C5 | 151.0° | 156.4° |
| O2S | S | N3S | HN3S | 64.1° | 6.5° |
| O2S | S | N3S | HN3A | 175.9° | 173.5° |
| O1S | S | C4 | C3 | 89.6° | 156.4° |
| O1S | S | C4 | C5 | 90.7° | 23.6° |
| O1S | S | N3S | HN3S | 57.4° | 126.5° |
| O1S | S | N3S | HN3A | 62.6° | 53.5° |
| C7 | C1 | C6 | C2 | 175.4° | 179.7° |
| C7 | C1 | C2 | C3 | 179.9° | 179.7° |
| C7 | C1 | C2 | H2 | 0.1° | 0.3° |
| C7 | C1 | C6 | C5 | 176.0° | 179.7° |
| C7 | C1 | C6 | H6 | 4.0° | 0.3° |
| C6 | C1 | C2 | C3 | 4.3° | 0.0° |
| C6 | C1 | C2 | H2 | 175.7° | 180.0° |
| C1 | C6 | C5 | C4 | 1.9° | 0.0° |
| C1 | C6 | C5 | H6 | 180.0° | 179.9° |
| C1 | C6 | C5 | H5 | 178.1° | 180.0° |
| C6 | C1 | C7 | O7 | 177.4° | 0.0° |
| C1 | C2 | C3 | H2 | 180.0° | 180.0° |
| C1 | C2 | C3 | C4 | 6.0° | 0.0° |
| C1 | C2 | C3 | H3 | 174.0° | 180.0° |
| C2 | C1 | C6 | C5 | 0.5° | 0.1° |
| C2 | C1 | C6 | H6 | 179.5° | 180.0° |
| C2 | C1 | C7 | O7 | 2.1° | 179.7° |
| C2 | C3 | C4 | H3 | 180.0° | 179.9° |
| C2 | C3 | C4 | C5 | 3.3° | 0.0° |
| H2 | C2 | C3 | C4 | 174.0° | 180.0° |
| H2 | C2 | C3 | H3 | 6.0° | 0.1° |
| C3 | C4 | C5 | C6 | 0.5° | 0.0° |
| C3 | C4 | C5 | H5 | 179.5° | 180.0° |
| H3 | C3 | C4 | C5 | 176.7° | 180.0° |
| C4 | C5 | C6 | H5 | 180.0° | 180.0° |
| C4 | C5 | C6 | H6 | 178.1° | 180.0° |
| H5 | C5 | C6 | H6 | 1.9° | 0.0° |
| C2' | C1' | H1' | H1'A | 121.9° | 119.9° |
| C1' | C2' | C16 | H2' | 120.0° | 120.0° |
| C1' | C2' | C16 | H2'A | 120.0° | 119.9° |
| C1' | C2' | C16 | H16 | 180.0° | 60.0° |
| C1' | C2' | C16 | H16A | 60.0° | 60.1° |
| C1' | C2' | C16 | H16B | 60.0° | 180.0° |
| C1' | C2' | H2' | H2'A | 118.1° | 119.9° |
| H1' | C1' | C2' | C16 | 177.9° | 59.9° |
| H1' | C1' | C2' | H2' | 62.2° | 180.0° |
| H1' | C1' | C2' | H2'A | 57.8° | 60.1° |
| H1'A | C1' | C2' | C16 | 57.9° | 60.0° |
| H1'A | C1' | C2' | H2' | 177.8° | 60.1° |
| H1'A | C1' | C2' | H2'A | 62.1° | 180.0° |
| C2' | C16 | H16 | H16A | 120.0° | 120.0° |
| C2' | C16 | H16 | H16B | 120.0° | 120.0° |
| C2' | C16 | H16A | H16B | 120.0° | 119.9° |
| C16 | C2' | H2' | H2'A | 118.1° | 120.1° |
| H16 | C16 | H16A | H16B | 120.0° | 120.1° |
| H16 | C16 | C2' | H2' | 60.0° | 180.0° |
| H16 | C16 | C2' | H2'A | 60.0° | 60.0° |
| H16A | C16 | C2' | H2' | 180.0° | 59.9° |
| H16A | C16 | C2' | H2'A | 60.0° | 180.0° |
| H16B | C16 | C2' | H2' | 60.0° | 60.0° |
| H16B | C16 | C2' | H2'A | 180.0° | 60.0° |
