RYV
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| C4 | S | sing | 1.76Å | 1.73Å | |
| N3S | S | sing | 1.66Å | 1.63Å | |
| O1S | S | doub | 1.42Å | 1.43Å | |
| S | O2S | doub | 1.42Å | 1.47Å | |
| C1' | N' | sing | 1.47Å | 1.49Å | |
| N' | C7 | sing | 1.35Å | 1.28Å | |
| N' | HN' | sing | 0.97Å | 1.00Å | |
| O' | C7 | doub | 1.22Å | 1.27Å | |
| C7 | C1 | sing | 1.48Å | 1.49Å | |
| C1 | C3 | doub | 1.40Å | 1.41Å | Aromatic |
| C1 | C5 | sing | 1.40Å | 1.42Å | Aromatic |
| C3 | C2 | sing | 1.38Å | 1.40Å | Aromatic |
| C2 | C4 | doub | 1.38Å | 1.41Å | Aromatic |
| C2 | H2 | sing | 1.08Å | 1.08Å | |
| C3 | H3 | sing | 1.08Å | 1.08Å | |
| C6 | C4 | sing | 1.38Å | 1.42Å | Aromatic |
| C5 | C6 | doub | 1.38Å | 1.40Å | Aromatic |
| C5 | H5 | sing | 1.08Å | 1.08Å | |
| C6 | H6 | sing | 1.08Å | 1.08Å | |
| C1' | C2' | sing | 1.53Å | 1.55Å | |
| C1' | H1' | sing | 1.09Å | 1.10Å | |
| C1' | H1'A | sing | 1.09Å | 1.10Å | |
| C2' | H2' | sing | 1.09Å | 1.10Å | |
| C2' | H2'A | sing | 1.09Å | 1.10Å | |
| C2' | H2'B | sing | 1.09Å | 1.10Å | |
| N3S | HN3S | sing | 0.97Å | 1.00Å | |
| N3S | HN3A | sing | 0.97Å | 1.00Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| C4 | S | N3S | 105.7° | 107.2° |
| C4 | S | O1S | 105.8° | 106.4° |
| C4 | S | O2S | 107.5° | 106.4° |
| S | C4 | C2 | 121.6° | 119.9° |
| S | C4 | C6 | 118.9° | 119.9° |
| N3S | S | O1S | 112.0° | 106.4° |
| N3S | S | O2S | 108.9° | 106.4° |
| S | N3S | HN3S | 109.5° | 120.0° |
| S | N3S | HN3A | 109.5° | 120.0° |
| O1S | S | O2S | 116.2° | 123.2° |
| C1' | N' | C7 | 121.4° | 120.0° |
| C1' | N' | HN' | 119.3° | 120.0° |
| N' | C1' | C2' | 103.7° | 109.5° |
| N' | C1' | H1' | 111.4° | 109.4° |
| N' | C1' | H1'A | 111.5° | 109.5° |
| C7 | N' | HN' | 119.3° | 120.0° |
| N' | C7 | O' | 122.2° | 120.0° |
| N' | C7 | C1 | 119.9° | 120.0° |
| O' | C7 | C1 | 117.8° | 120.0° |
| C7 | C1 | C3 | 120.2° | 120.1° |
| C7 | C1 | C5 | 120.5° | 120.1° |
| C3 | C1 | C5 | 119.3° | 119.7° |
| C1 | C3 | C2 | 120.2° | 119.9° |
| C1 | C3 | H3 | 119.9° | 120.1° |
| C1 | C5 | C6 | 120.4° | 119.9° |
| C1 | C5 | H5 | 119.8° | 120.1° |
| C3 | C2 | C4 | 120.5° | 120.1° |
| C3 | C2 | H2 | 119.7° | 120.0° |
| C2 | C3 | H3 | 119.9° | 120.0° |
| C4 | C2 | H2 | 119.7° | 119.9° |
| C2 | C4 | C6 | 119.3° | 120.3° |
| C4 | C6 | C5 | 120.2° | 120.2° |
| C4 | C6 | H6 | 119.9° | 119.9° |
| C6 | C5 | H5 | 119.8° | 120.1° |
| C5 | C6 | H6 | 119.9° | 119.9° |
| C2' | C1' | H1' | 111.4° | 109.5° |
| C2' | C1' | H1'A | 111.4° | 109.5° |
| C1' | C2' | H2' | 109.5° | 109.5° |
| C1' | C2' | H2'A | 109.5° | 109.5° |
| C1' | C2' | H2'B | 109.4° | 109.5° |
| H1' | C1' | H1'A | 107.4° | 109.5° |
| H2' | C2' | H2'A | 109.5° | 109.5° |
| H2' | C2' | H2'B | 109.5° | 109.4° |
| H2'A | C2' | H2'B | 109.5° | 109.4° |
| HN3S | N3S | HN3A | 109.4° | 120.0° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| C4 | S | N3S | O1S | 114.8° | 113.5° |
| C4 | S | N3S | O2S | 115.3° | 113.5° |
| C4 | S | O1S | O2S | 119.3° | 123.0° |
| S | C4 | C2 | C3 | 178.6° | 180.0° |
| S | C4 | C2 | C6 | 175.3° | 179.9° |
| S | C4 | C2 | H2 | 1.4° | 0.0° |
| S | C4 | C6 | C5 | 179.5° | 180.0° |
| S | C4 | C6 | H6 | 0.5° | 0.0° |
| C4 | S | N3S | HN3S | 180.0° | 120.0° |
| C4 | S | N3S | HN3A | 60.0° | 60.1° |
| N3S | S | O1S | O2S | 126.0° | 122.9° |
| N3S | S | C4 | C2 | 131.0° | 90.0° |
| N3S | S | C4 | C6 | 53.7° | 90.1° |
| S | N3S | HN3S | HN3A | 120.0° | 179.9° |
| O1S | S | C4 | C2 | 12.0° | 156.5° |
| O1S | S | C4 | C6 | 172.7° | 23.5° |
| O1S | S | N3S | HN3S | 65.2° | 126.4° |
| O1S | S | N3S | HN3A | 54.8° | 53.5° |
| O2S | S | C4 | C2 | 112.8° | 23.5° |
| O2S | S | C4 | C6 | 62.5° | 156.4° |
| O2S | S | N3S | HN3S | 64.7° | 6.5° |
| O2S | S | N3S | HN3A | 175.3° | 173.6° |
| C1' | N' | C7 | HN' | 180.0° | 179.9° |
| C1' | N' | C7 | O' | 4.6° | 0.1° |
| C1' | N' | C7 | C1 | 179.4° | 180.0° |
| N' | C1' | C2' | H1' | 120.0° | 119.9° |
| N' | C1' | C2' | H1'A | 120.0° | 120.1° |
| N' | C1' | H1' | H1'A | 122.4° | 120.0° |
| N' | C1' | C2' | H2' | 180.0° | 59.9° |
| N' | C1' | C2' | H2'A | 60.0° | 180.0° |
| N' | C1' | C2' | H2'B | 60.0° | 60.0° |
| N' | C7 | O' | C1 | 176.1° | 180.0° |
| N' | C7 | C1 | C3 | 172.2° | 180.0° |
| N' | C7 | C1 | C5 | 6.3° | 0.2° |
| C7 | N' | C1' | C2' | 77.0° | 180.0° |
| C7 | N' | C1' | H1' | 163.0° | 60.1° |
| C7 | N' | C1' | H1'A | 42.9° | 59.9° |
| HN' | N' | C7 | O' | 175.4° | 180.0° |
| HN' | N' | C7 | C1 | 0.6° | 0.0° |
| HN' | N' | C1' | C2' | 103.0° | 0.0° |
| HN' | N' | C1' | H1' | 17.0° | 120.0° |
| HN' | N' | C1' | H1'A | 137.0° | 120.0° |
| O' | C7 | C1 | C3 | 11.7° | 0.0° |
| O' | C7 | C1 | C5 | 169.9° | 179.7° |
| C7 | C1 | C3 | C5 | 178.4° | 179.7° |
| C7 | C1 | C3 | C2 | 178.4° | 179.7° |
| C7 | C1 | C3 | H3 | 1.6° | 0.2° |
| C7 | C1 | C5 | C6 | 179.2° | 179.7° |
| C7 | C1 | C5 | H5 | 0.8° | 0.3° |
| C1 | C3 | C2 | H3 | 180.0° | 179.9° |
| C1 | C3 | C2 | C4 | 1.3° | 0.0° |
| C1 | C3 | C2 | H2 | 178.7° | 179.9° |
| C3 | C1 | C5 | C6 | 0.8° | 0.0° |
| C3 | C1 | C5 | H5 | 179.2° | 180.0° |
| C5 | C1 | C3 | C2 | 0.0° | 0.0° |
| C5 | C1 | C3 | H3 | 180.0° | 180.0° |
| C1 | C5 | C6 | C4 | 2.8° | 0.0° |
| C1 | C5 | C6 | H5 | 180.0° | 180.0° |
| C1 | C5 | C6 | H6 | 177.2° | 180.0° |
| C3 | C2 | C4 | H2 | 180.0° | 179.9° |
| C3 | C2 | C4 | C6 | 3.3° | 0.0° |
| C4 | C2 | C3 | H3 | 178.7° | 179.9° |
| C2 | C4 | C6 | C5 | 4.1° | 0.1° |
| C2 | C4 | C6 | H6 | 175.9° | 179.9° |
| H2 | C2 | C3 | H3 | 1.2° | 0.1° |
| H2 | C2 | C4 | C6 | 176.7° | 179.9° |
| C4 | C6 | C5 | H6 | 180.0° | 180.0° |
| C4 | C6 | C5 | H5 | 177.2° | 180.0° |
| H5 | C5 | C6 | H6 | 2.8° | 0.0° |
| C2' | C1' | H1' | H1'A | 122.3° | 120.1° |
| C1' | C2' | H2' | H2'A | 120.0° | 120.0° |
| C1' | C2' | H2' | H2'B | 120.0° | 120.0° |
| C1' | C2' | H2'A | H2'B | 120.0° | 120.0° |
| H1' | C1' | C2' | H2' | 60.0° | 60.0° |
| H1' | C1' | C2' | H2'A | 180.0° | 60.0° |
| H1' | C1' | C2' | H2'B | 60.0° | 180.0° |
| H1'A | C1' | C2' | H2' | 60.0° | NaN° |
| H1'A | C1' | C2' | H2'A | 60.0° | 60.0° |
| H1'A | C1' | C2' | H2'B | 180.0° | 60.0° |
| H2' | C2' | H2'A | H2'B | 120.0° | 119.9° |
