RYR
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
N01 | C02 | doub | 1.31Å | 1.25Å | |
S31 | C30 | sing | 1.71Å | 1.63Å | Aromatic |
S31 | C04 | sing | 1.76Å | 1.62Å | Aromatic |
C30 | C06 | doub | 1.35Å | 1.42Å | Aromatic |
C02 | C04 | sing | 1.47Å | 1.51Å | |
C02 | N03 | sing | 1.38Å | 1.44Å | |
C04 | C05 | doub | 1.35Å | 1.42Å | Aromatic |
C06 | C05 | sing | 1.39Å | 1.50Å | Aromatic |
C06 | C07 | sing | 1.48Å | 1.51Å | |
C08 | C07 | doub | 1.39Å | 1.38Å | Aromatic |
C08 | C09 | sing | 1.38Å | 1.38Å | Aromatic |
C07 | C29 | sing | 1.39Å | 1.39Å | Aromatic |
C09 | C10 | doub | 1.38Å | 1.38Å | Aromatic |
C29 | C11 | doub | 1.39Å | 1.38Å | Aromatic |
C10 | C11 | sing | 1.39Å | 1.39Å | Aromatic |
C11 | N12 | sing | 1.40Å | 1.46Å | |
N12 | C13 | sing | 1.35Å | 1.46Å | |
O28 | C13 | doub | 1.21Å | 1.19Å | |
C13 | C14 | sing | 1.51Å | 1.54Å | |
C15 | C14 | sing | 1.53Å | 1.54Å | |
C14 | O16 | sing | 1.43Å | 1.42Å | |
C14 | C27 | sing | 1.53Å | 1.53Å | |
O16 | C17 | sing | 1.36Å | 1.42Å | |
C18 | C17 | doub | 1.39Å | 1.40Å | Aromatic |
C18 | C19 | sing | 1.38Å | 1.39Å | Aromatic |
C17 | C26 | sing | 1.39Å | 1.38Å | Aromatic |
C19 | C20 | doub | 1.38Å | 1.39Å | Aromatic |
C26 | C25 | doub | 1.38Å | 1.38Å | Aromatic |
C20 | C25 | sing | 1.38Å | 1.38Å | Aromatic |
C20 | C21 | sing | 1.51Å | 1.53Å | |
F22 | C21 | sing | 1.40Å | 1.35Å | |
C21 | F23 | sing | 1.40Å | 1.37Å | |
C21 | F24 | sing | 1.40Å | 1.37Å | |
C19 | H191 | sing | 1.08Å | 1.08Å | |
C15 | H151 | sing | 1.09Å | 1.10Å | |
C15 | H152 | sing | 1.09Å | 1.10Å | |
C15 | H153 | sing | 1.09Å | 1.10Å | |
C18 | H181 | sing | 1.08Å | 1.08Å | |
C10 | H101 | sing | 1.08Å | 1.08Å | |
C05 | H051 | sing | 1.08Å | 1.08Å | |
C08 | H081 | sing | 1.08Å | 1.08Å | |
C09 | H091 | sing | 1.08Å | 1.08Å | |
C25 | H251 | sing | 1.08Å | 1.08Å | |
C26 | H261 | sing | 1.08Å | 1.08Å | |
C27 | H273 | sing | 1.09Å | 1.10Å | |
C27 | H271 | sing | 1.09Å | 1.10Å | |
C27 | H272 | sing | 1.09Å | 1.10Å | |
C29 | H291 | sing | 1.08Å | 1.08Å | |
C30 | H301 | sing | 1.08Å | 1.08Å | |
N01 | H011 | sing | 0.97Å | 1.00Å | |
N03 | H032 | sing | 0.97Å | 1.00Å | |
N12 | H121 | sing | 0.97Å | 1.00Å | |
N03 | H031 | sing | 0.97Å | 1.00Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
N01 | C02 | C04 | 120.9° | 120.0° |
N01 | C02 | N03 | 121.8° | 120.0° |
C02 | N01 | H011 | 112.0° | 120.0° |
C30 | S31 | C04 | 100.3° | 91.7° |
S31 | C30 | C06 | 108.3° | 110.7° |
S31 | C30 | H301 | 125.9° | 124.6° |
S31 | C04 | C02 | 126.7° | 125.2° |
S31 | C04 | C05 | 110.2° | 109.5° |
C30 | C06 | C05 | 111.7° | 114.5° |
C30 | C06 | C07 | 125.9° | 122.8° |
C06 | C30 | H301 | 125.9° | 124.7° |
C04 | C02 | N03 | 117.3° | 120.0° |
C02 | C04 | C05 | 123.1° | 125.2° |
C02 | N03 | H032 | 120.0° | 120.0° |
C02 | N03 | H031 | 120.0° | 120.0° |
C04 | C05 | C06 | 109.5° | 113.6° |
C04 | C05 | H051 | 125.2° | 123.3° |
C05 | C06 | C07 | 122.4° | 122.8° |
C06 | C05 | H051 | 125.3° | 123.2° |
C06 | C07 | C08 | 117.4° | 120.1° |
C06 | C07 | C29 | 120.2° | 120.1° |
C07 | C08 | C09 | 119.6° | 120.1° |
C08 | C07 | C29 | 122.2° | 119.8° |
C07 | C08 | H081 | 120.2° | 120.0° |
C08 | C09 | C10 | 119.0° | 120.2° |
C09 | C08 | H081 | 120.2° | 120.0° |
C08 | C09 | H091 | 120.5° | 119.9° |
C07 | C29 | C11 | 117.5° | 119.8° |
C07 | C29 | H291 | 121.2° | 120.1° |
C09 | C10 | C11 | 120.8° | 120.2° |
C09 | C10 | H101 | 119.6° | 119.9° |
C10 | C09 | H091 | 120.5° | 119.9° |
C29 | C11 | C10 | 120.7° | 120.0° |
C29 | C11 | N12 | 123.7° | 120.0° |
C11 | C29 | H291 | 121.2° | 120.1° |
C10 | C11 | N12 | 115.5° | 120.0° |
C11 | C10 | H101 | 119.6° | 119.9° |
C11 | N12 | C13 | 123.9° | 120.0° |
C11 | N12 | H121 | 118.1° | 120.0° |
N12 | C13 | O28 | 124.1° | 120.0° |
N12 | C13 | C14 | 113.7° | 120.0° |
C13 | N12 | H121 | 118.1° | 120.0° |
O28 | C13 | C14 | 122.2° | 120.0° |
C13 | C14 | C15 | 109.7° | 109.5° |
C13 | C14 | O16 | 106.3° | 109.5° |
C13 | C14 | C27 | 110.4° | 109.4° |
C15 | C14 | O16 | 106.8° | 109.5° |
C15 | C14 | C27 | 112.3° | 109.4° |
C14 | C15 | H151 | 109.5° | 109.5° |
C14 | C15 | H152 | 109.5° | 109.5° |
C14 | C15 | H153 | 109.5° | 109.5° |
O16 | C14 | C27 | 111.1° | 109.5° |
C14 | O16 | C17 | 124.8° | 117.0° |
C14 | C27 | H273 | 109.5° | 109.4° |
C14 | C27 | H271 | 109.5° | 109.5° |
C14 | C27 | H272 | 109.4° | 109.5° |
O16 | C17 | C18 | 124.5° | 120.0° |
O16 | C17 | C26 | 117.0° | 120.0° |
C17 | C18 | C19 | 120.2° | 119.9° |
C18 | C17 | C26 | 118.5° | 119.9° |
C17 | C18 | H181 | 119.9° | 120.1° |
C18 | C19 | C20 | 120.4° | 120.1° |
C18 | C19 | H191 | 119.8° | 120.0° |
C19 | C18 | H181 | 119.9° | 120.0° |
C17 | C26 | C25 | 121.3° | 119.9° |
C17 | C26 | H261 | 119.3° | 120.0° |
C19 | C20 | C25 | 119.4° | 120.1° |
C19 | C20 | C21 | 120.1° | 119.9° |
C20 | C19 | H191 | 119.8° | 120.0° |
C26 | C25 | C20 | 120.1° | 120.1° |
C26 | C25 | H251 | 120.0° | 120.0° |
C25 | C26 | H261 | 119.4° | 120.0° |
C25 | C20 | C21 | 120.5° | 120.0° |
C20 | C25 | H251 | 119.9° | 120.0° |
C20 | C21 | F22 | 110.6° | 109.5° |
C20 | C21 | F23 | 107.9° | 109.5° |
C20 | C21 | F24 | 111.4° | 109.5° |
F22 | C21 | F23 | 111.3° | 109.5° |
F22 | C21 | F24 | 107.6° | 109.5° |
F23 | C21 | F24 | 107.9° | 109.5° |
H151 | C15 | H152 | 109.4° | 109.5° |
H151 | C15 | H153 | 109.5° | 109.4° |
H152 | C15 | H153 | 109.5° | 109.5° |
H273 | C27 | H271 | 109.5° | 109.5° |
H273 | C27 | H272 | 109.5° | 109.5° |
H271 | C27 | H272 | 109.5° | 109.5° |
H032 | N03 | H031 | 120.0° | 120.0° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
N01 | C02 | C04 | S31 | 15.7° | 179.7° |
N01 | C02 | C04 | N03 | 178.0° | 179.9° |
N01 | C02 | C04 | C05 | 165.2° | 0.0° |
N01 | C02 | N03 | H032 | 177.9° | 180.0° |
N01 | C02 | N03 | H031 | 2.0° | 0.1° |
S31 | C30 | C06 | H301 | 180.0° | 179.7° |
C30 | S31 | C04 | C02 | 179.3° | 179.9° |
C30 | S31 | C04 | C05 | 1.5° | 0.4° |
S31 | C30 | C06 | C05 | 1.3° | 0.3° |
S31 | C30 | C06 | C07 | 177.5° | 179.7° |
C04 | S31 | C30 | C06 | 1.6° | 0.4° |
S31 | C04 | C02 | C05 | 179.1° | 179.7° |
S31 | C04 | C02 | N03 | 166.3° | 0.3° |
S31 | C04 | C05 | C06 | 0.8° | 0.3° |
S31 | C04 | C05 | H051 | 179.2° | 179.8° |
C04 | S31 | C30 | H301 | 178.4° | 179.9° |
C30 | C06 | C05 | C04 | 0.3° | 0.0° |
C30 | C06 | C05 | C07 | 178.9° | 180.0° |
C30 | C06 | C07 | C08 | 9.8° | 179.5° |
C30 | C06 | C07 | C29 | 175.5° | 0.0° |
C30 | C06 | C05 | H051 | 179.7° | 180.0° |
C02 | C04 | C05 | C06 | 179.9° | 180.0° |
C02 | C04 | C05 | H051 | 0.1° | 0.0° |
C04 | C02 | N01 | H011 | 177.9° | 180.0° |
C04 | C02 | N03 | H032 | 0.0° | 0.1° |
C04 | C02 | N03 | H031 | 180.0° | 180.0° |
N03 | C02 | C04 | C05 | 12.8° | 180.0° |
N03 | C02 | N01 | H011 | 0.0° | 0.1° |
C02 | N03 | H032 | H031 | 179.9° | 179.9° |
C04 | C05 | C06 | H051 | 180.0° | 180.0° |
C04 | C05 | C06 | C07 | 178.6° | 180.0° |
C05 | C06 | C07 | C08 | 168.9° | 0.5° |
C05 | C06 | C07 | C29 | 5.8° | 180.0° |
C05 | C06 | C30 | H301 | 178.7° | 180.0° |
C06 | C07 | C08 | C29 | 174.6° | 179.5° |
C06 | C07 | C08 | C09 | 178.8° | 179.8° |
C06 | C07 | C29 | C11 | 179.4° | 179.9° |
C07 | C06 | C05 | H051 | 1.4° | 0.0° |
C06 | C07 | C08 | H081 | 1.2° | 0.0° |
C06 | C07 | C29 | H291 | 0.5° | 0.5° |
C07 | C06 | C30 | H301 | 2.5° | 0.0° |
C07 | C08 | C09 | H081 | 180.0° | 179.8° |
C07 | C08 | C09 | C10 | 2.0° | 0.5° |
C08 | C07 | C29 | C11 | 5.0° | 0.5° |
C07 | C08 | C09 | H091 | 178.0° | 179.5° |
C08 | C07 | C29 | H291 | 175.0° | 180.0° |
C09 | C08 | C07 | C29 | 4.2° | 0.7° |
C08 | C09 | C10 | H091 | 180.0° | 180.0° |
C08 | C09 | C10 | C11 | 0.8° | 0.0° |
C08 | C09 | C10 | H101 | 179.2° | 179.8° |
C07 | C29 | C11 | H291 | 180.0° | 179.5° |
C07 | C29 | C11 | C10 | 3.7° | 0.0° |
C07 | C29 | C11 | N12 | 179.7° | 180.0° |
C29 | C07 | C08 | H081 | 175.8° | 179.5° |
C09 | C10 | C11 | C29 | 1.7° | 0.2° |
C09 | C10 | C11 | H101 | 180.0° | 179.8° |
C09 | C10 | C11 | N12 | 178.6° | 179.8° |
C10 | C09 | C08 | H081 | 178.0° | 179.7° |
C29 | C11 | C10 | N12 | 176.9° | 180.0° |
C29 | C11 | N12 | C13 | 22.7° | 143.8° |
C29 | C11 | C10 | H101 | 178.3° | 180.0° |
C29 | C11 | N12 | H121 | 157.3° | 36.1° |
C10 | C11 | N12 | C13 | 154.1° | 36.1° |
C11 | C10 | C09 | H091 | 179.2° | 180.0° |
C10 | C11 | C29 | H291 | 176.3° | 179.5° |
C10 | C11 | N12 | H121 | 25.9° | 143.9° |
C11 | N12 | C13 | H121 | 180.0° | 179.9° |
C11 | N12 | C13 | O28 | 1.6° | 4.5° |
C11 | N12 | C13 | C14 | 176.7° | 175.5° |
N12 | C11 | C10 | H101 | 1.4° | 0.0° |
N12 | C11 | C29 | H291 | 0.3° | 0.5° |
N12 | C13 | O28 | C14 | 178.2° | 180.0° |
N12 | C13 | C14 | C15 | 73.3° | 60.0° |
N12 | C13 | C14 | O16 | 41.9° | 179.9° |
N12 | C13 | C14 | C27 | 162.5° | 60.0° |
O28 | C13 | C14 | C15 | 108.3° | 120.0° |
O28 | C13 | C14 | O16 | 136.5° | 0.1° |
O28 | C13 | C14 | C27 | 15.9° | 120.0° |
O28 | C13 | N12 | H121 | 178.4° | 175.6° |
C13 | C14 | C15 | O16 | 114.9° | 120.1° |
C13 | C14 | C15 | C27 | 123.1° | 120.0° |
C13 | C14 | O16 | C27 | 120.1° | 120.0° |
C13 | C14 | O16 | C17 | 61.7° | 61.1° |
C13 | C14 | C15 | H151 | 180.0° | 175.8° |
C13 | C14 | C15 | H152 | 60.0° | 64.2° |
C13 | C14 | C15 | H153 | 60.0° | 55.8° |
C13 | C14 | C27 | H273 | 180.0° | 175.2° |
C13 | C14 | C27 | H271 | 60.0° | 64.8° |
C13 | C14 | C27 | H272 | 60.0° | 55.2° |
C14 | C13 | N12 | H121 | 3.3° | 4.4° |
C15 | C14 | O16 | C27 | 122.8° | 120.0° |
C15 | C14 | O16 | C17 | 178.9° | 59.0° |
C14 | C15 | H151 | H152 | 120.0° | 120.0° |
C14 | C15 | H151 | H153 | 120.0° | 120.0° |
C14 | C15 | H152 | H153 | 120.0° | 120.0° |
C15 | C14 | C27 | H273 | 57.2° | 55.2° |
C15 | C14 | C27 | H271 | 62.7° | 175.2° |
C15 | C14 | C27 | H272 | 177.2° | 64.8° |
C14 | O16 | C17 | C18 | 5.4° | 6.8° |
C14 | O16 | C17 | C26 | 174.4° | 174.0° |
O16 | C14 | C15 | H151 | 65.1° | 55.7° |
O16 | C14 | C15 | H152 | 54.9° | 175.7° |
O16 | C14 | C15 | H153 | 174.9° | 64.3° |
O16 | C14 | C27 | H273 | 62.3° | 64.8° |
O16 | C14 | C27 | H271 | 177.7° | 55.2° |
O16 | C14 | C27 | H272 | 57.7° | 175.2° |
C27 | C14 | O16 | C17 | 58.4° | 178.9° |
C27 | C14 | C15 | H151 | 56.9° | 64.3° |
C27 | C14 | C15 | H152 | 176.9° | 55.7° |
C27 | C14 | C15 | H153 | 63.1° | 175.7° |
C14 | C27 | H273 | H271 | 120.0° | 120.0° |
C14 | C27 | H273 | H272 | 120.0° | 120.0° |
C14 | C27 | H271 | H272 | 120.0° | 120.0° |
O16 | C17 | C18 | C26 | 179.8° | 179.2° |
O16 | C17 | C18 | C19 | 179.5° | 179.7° |
O16 | C17 | C26 | C25 | 179.5° | 180.0° |
O16 | C17 | C18 | H181 | 0.5° | 0.2° |
O16 | C17 | C26 | H261 | 0.5° | 0.9° |
C17 | C18 | C19 | H181 | 180.0° | 180.0° |
C17 | C18 | C19 | C20 | 0.3° | 0.0° |
C18 | C17 | C26 | C25 | 0.3° | 0.8° |
C17 | C18 | C19 | H191 | 179.7° | 179.7° |
C18 | C17 | C26 | H261 | 179.7° | 180.0° |
C19 | C18 | C17 | C26 | 0.3° | 0.6° |
C18 | C19 | C20 | H191 | 180.0° | 179.7° |
C18 | C19 | C20 | C25 | 0.2° | 0.3° |
C18 | C19 | C20 | C21 | 179.9° | 179.7° |
C17 | C26 | C25 | H261 | 180.0° | 179.1° |
C17 | C26 | C25 | C20 | 0.2° | 0.5° |
C26 | C17 | C18 | H181 | 179.7° | 179.4° |
C17 | C26 | C25 | H251 | 179.8° | 179.4° |
C19 | C20 | C25 | C26 | 0.2° | 0.0° |
C19 | C20 | C25 | C21 | 179.9° | 180.0° |
C19 | C20 | C21 | F22 | 87.3° | 30.0° |
C19 | C20 | C21 | F23 | 34.7° | 90.0° |
C19 | C20 | C21 | F24 | 153.0° | 150.0° |
C20 | C19 | C18 | H181 | 179.7° | 180.0° |
C19 | C20 | C25 | H251 | 179.8° | 180.0° |
C26 | C25 | C20 | H251 | 180.0° | 180.0° |
C26 | C25 | C20 | C21 | 180.0° | 180.0° |
C25 | C20 | C21 | F22 | 92.8° | 150.0° |
C25 | C20 | C21 | F23 | 145.2° | 90.0° |
C25 | C20 | C21 | F24 | 26.9° | 30.0° |
C25 | C20 | C19 | H191 | 179.8° | 180.0° |
C20 | C25 | C26 | H261 | 179.8° | 179.7° |
C20 | C21 | F22 | F23 | 120.0° | 120.0° |
C20 | C21 | F22 | F24 | 122.0° | 120.0° |
C20 | C21 | F23 | F24 | 120.5° | 120.0° |
C21 | C20 | C19 | H191 | 0.1° | 0.0° |
C21 | C20 | C25 | H251 | 0.1° | 0.0° |
F22 | C21 | F23 | F24 | 117.9° | 120.0° |
H191 | C19 | C18 | H181 | 0.3° | 0.3° |
H151 | C15 | H152 | H153 | 120.0° | 120.0° |
H101 | C10 | C09 | H091 | 0.8° | 0.2° |
H081 | C08 | C09 | H091 | 2.0° | 0.2° |
H251 | C25 | C26 | H261 | 0.2° | 0.3° |
H273 | C27 | H271 | H272 | 120.0° | 120.0° |