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SummaryGeometryRelated PDB entries

RYP

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
C01N02sing1.47Å1.41Å
N02C03sing1.47Å1.50Å
C03C04sing1.51Å1.59Å
C04C09doub1.39Å1.35ÅAromatic
C04C05sing1.39Å1.36ÅAromatic
C09C08sing1.38Å1.39ÅAromatic
C05C06doub1.38Å1.40ÅAromatic
C08N07doub1.32Å1.28ÅAromatic
C06N07sing1.32Å1.30ÅAromatic
C01H1sing1.09Å1.10Å
C01H2sing1.09Å1.10Å
C01H3sing1.09Å1.10Å
C03H4sing1.09Å1.10Å
C03H5sing1.09Å1.10Å
C05H6sing1.08Å1.08Å
C06H7sing1.08Å1.08Å
C08H8sing1.08Å1.08Å
C09H9sing1.08Å1.08Å
N02H10sing1.01Å1.00Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
C01N02C03113.1°111.0°
N02C01H1109.5°109.4°
N02C01H2109.5°109.5°
N02C01H3109.5°109.4°
C01N02H10108.6°111.0°
N02C03C04111.3°109.5°
N02C03H4109.0°109.4°
N02C03H5109.0°109.5°
C03N02H10108.5°111.1°
C03C04C09119.2°120.8°
C03C04C05121.1°120.8°
C04C03H4109.0°109.5°
C04C03H5109.0°109.4°
C09C04C05119.7°118.4°
C04C09C08118.2°119.2°
C04C09H9120.9°120.4°
C04C05C06118.5°119.2°
C04C05H6120.7°120.4°
C09C08N07122.0°120.8°
C09C08H8119.0°119.6°
C08C09H9120.9°120.4°
C05C06N07120.5°120.7°
C06C05H6120.8°120.4°
C05C06H7119.8°119.6°
C08N07C06121.1°121.7°
N07C08H8119.0°119.6°
N07C06H7119.7°119.7°
H1C01H2109.5°109.5°
H1C01H3109.4°109.4°
H2C01H3109.5°109.6°
H4C03H5109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
C01N02C03H10120.6°124.0°
C01N02C03C04112.8°180.0°
N02C01H1H2120.0°120.0°
N02C01H1H3120.0°119.9°
N02C01H2H3120.0°120.0°
C01N02C03H47.5°60.0°
C01N02C03H5127.0°60.0°
N02C03C04H4120.3°119.9°
N02C03C04H5120.3°120.0°
N02C03C04C09105.3°90.0°
N02C03C04C0574.0°89.7°
C03N02C01H1180.0°180.0°
C03N02C01H260.0°60.0°
C03N02C01H360.0°60.0°
N02C03H4H5119.2°120.1°
C03C04C09C05179.3°179.7°
C03C04C09C08179.8°180.0°
C03C04C05C06179.6°180.0°
C04C03H4H5119.1°120.0°
C03C04C05H60.4°0.0°
C03C04C09H90.2°0.0°
C04C03N02H10126.7°56.0°
C04C09C08H9180.0°179.9°
C09C04C05C060.4°0.3°
C04C09C08N071.3°0.0°
C09C04C03H415.0°150.1°
C09C04C03H5134.4°30.0°
C09C04C05H6179.6°179.7°
C04C09C08H8178.7°179.7°
C05C04C09C080.9°0.3°
C04C05C06H6180.0°180.0°
C04C05C06N070.1°0.1°
C05C04C03H4165.7°30.2°
C05C04C03H546.3°150.3°
C04C05C06H7179.8°180.0°
C05C04C09H9179.1°179.7°
C09C08N07H8180.0°179.7°
C09C08N07C061.1°0.3°
C05C06N07C080.5°0.4°
C05C06N07H7180.0°179.9°
C08N07C06H7179.5°179.7°
N07C08C09H9178.7°180.0°
N07C06C05H6179.9°180.0°
C06N07C08H8178.9°180.0°
H1C01H2H3120.0°120.0°
H1C01N02H1059.4°56.0°
H2C01N02H1060.6°64.0°
H3C01N02H10179.4°175.9°
H4C03N02H10113.1°64.0°
H5C03N02H106.4°176.0°
H6C05C06H70.2°0.0°
H8C08C09H91.3°0.2°

219869

PDB entries from 2024-05-15

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