RYD
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| O | C5 | sing | 1.43Å | 1.35Å | |
| C5 | C4 | sing | 1.51Å | 1.49Å | |
| C4 | C6 | doub | 1.36Å | 1.40Å | Aromatic |
| C4 | C3 | sing | 1.39Å | 1.36Å | Aromatic |
| C6 | C7 | sing | 1.40Å | 1.42Å | Aromatic |
| C3 | C2 | doub | 1.37Å | 1.37Å | Aromatic |
| C7 | N1 | sing | 1.35Å | 1.35Å | Aromatic |
| C7 | C1 | doub | 1.41Å | 1.40Å | Aromatic |
| C2 | C1 | sing | 1.39Å | 1.38Å | Aromatic |
| N1 | N2 | doub | 1.29Å | 1.32Å | Aromatic |
| C1 | N | sing | 1.37Å | 1.41Å | Aromatic |
| N2 | N | sing | 1.40Å | 1.38Å | Aromatic |
| N | C | sing | 1.46Å | 1.43Å | |
| C5 | H1 | sing | 1.09Å | 1.10Å | |
| C5 | H2 | sing | 1.09Å | 1.10Å | |
| C6 | H3 | sing | 1.08Å | 1.08Å | |
| O | H4 | sing | 0.97Å | 0.95Å | |
| C3 | H5 | sing | 1.08Å | 1.08Å | |
| C2 | H6 | sing | 1.08Å | 1.08Å | |
| C | H7 | sing | 1.09Å | 1.10Å | |
| C | H8 | sing | 1.09Å | 1.10Å | |
| C | H9 | sing | 1.09Å | 1.10Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O | C5 | C4 | 97.9° | 109.5° |
| O | C5 | H1 | 112.3° | 109.5° |
| O | C5 | H2 | 112.3° | 109.5° |
| C5 | O | H4 | 109.5° | 114.0° |
| C5 | C4 | C6 | 122.4° | 119.6° |
| C5 | C4 | C3 | 116.2° | 119.6° |
| C4 | C5 | H1 | 112.3° | 109.4° |
| C4 | C5 | H2 | 112.3° | 109.5° |
| C6 | C4 | C3 | 121.2° | 120.8° |
| C4 | C6 | C7 | 116.6° | 119.8° |
| C4 | C6 | H3 | 121.7° | 120.1° |
| C4 | C3 | C2 | 121.8° | 120.5° |
| C4 | C3 | H5 | 119.1° | 119.7° |
| C6 | C7 | N1 | 131.2° | 133.2° |
| C6 | C7 | C1 | 121.1° | 119.1° |
| C7 | C6 | H3 | 121.7° | 120.1° |
| C3 | C2 | C1 | 119.7° | 119.8° |
| C2 | C3 | H5 | 119.1° | 119.7° |
| C3 | C2 | H6 | 120.2° | 120.1° |
| N1 | C7 | C1 | 107.5° | 107.7° |
| C7 | N1 | N2 | 110.8° | 110.3° |
| C7 | C1 | C2 | 119.4° | 119.9° |
| C7 | C1 | N | 105.8° | 106.1° |
| C2 | C1 | N | 134.7° | 134.0° |
| C1 | C2 | H6 | 120.2° | 120.1° |
| N1 | N2 | N | 108.7° | 109.5° |
| C1 | N | N2 | 107.2° | 106.4° |
| C1 | N | C | 127.6° | 126.8° |
| N2 | N | C | 125.0° | 126.8° |
| N | C | H7 | 109.5° | 109.5° |
| N | C | H8 | 109.4° | 109.4° |
| N | C | H9 | 109.5° | 109.4° |
| H1 | C5 | H2 | 109.4° | 109.5° |
| H7 | C | H8 | 109.5° | 109.5° |
| H7 | C | H9 | 109.5° | 109.5° |
| H8 | C | H9 | 109.4° | 109.5° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O | C5 | C4 | H1 | 118.1° | 120.0° |
| O | C5 | C4 | H2 | 118.1° | 120.1° |
| O | C5 | C4 | C6 | 68.1° | 90.0° |
| O | C5 | C4 | C3 | 116.9° | 89.9° |
| O | C5 | H1 | H2 | 125.4° | 120.0° |
| C5 | C4 | C6 | C3 | 174.7° | 179.9° |
| C5 | C4 | C6 | C7 | 171.2° | 180.0° |
| C5 | C4 | C3 | C2 | 171.1° | 180.0° |
| C4 | C5 | H1 | H2 | 125.4° | 120.0° |
| C5 | C4 | C6 | H3 | 8.8° | 0.0° |
| C4 | C5 | O | H4 | 180.0° | 180.0° |
| C5 | C4 | C3 | H5 | 8.9° | 0.1° |
| C4 | C6 | C7 | H3 | 180.0° | 179.9° |
| C6 | C4 | C3 | C2 | 4.0° | 0.1° |
| C4 | C6 | C7 | N1 | 175.4° | 180.0° |
| C4 | C6 | C7 | C1 | 0.6° | 0.1° |
| C6 | C4 | C5 | H1 | 173.8° | 150.0° |
| C6 | C4 | C5 | H2 | 50.0° | 30.1° |
| C6 | C4 | C3 | H5 | 176.0° | 180.0° |
| C3 | C4 | C6 | C7 | 3.5° | 0.1° |
| C4 | C3 | C2 | H5 | 180.0° | 179.9° |
| C4 | C3 | C2 | C1 | 1.2° | 0.0° |
| C3 | C4 | C5 | H1 | 1.1° | 30.1° |
| C3 | C4 | C5 | H2 | 125.0° | 150.1° |
| C3 | C4 | C6 | H3 | 176.5° | 179.9° |
| C4 | C3 | C2 | H6 | 178.7° | 180.0° |
| C6 | C7 | N1 | C1 | 176.4° | 179.9° |
| C6 | C7 | C1 | C2 | 2.0° | 0.0° |
| C6 | C7 | N1 | N2 | 174.6° | 180.0° |
| C6 | C7 | C1 | N | 175.1° | 180.0° |
| C3 | C2 | C1 | C7 | 1.7° | 0.0° |
| C3 | C2 | C1 | H6 | 180.0° | 180.0° |
| C3 | C2 | C1 | N | 174.4° | 180.0° |
| N1 | C7 | C1 | C2 | 178.8° | 179.9° |
| N1 | C7 | C1 | N | 1.7° | 0.0° |
| C7 | N1 | N2 | N | 1.1° | 0.0° |
| N1 | C7 | C6 | H3 | 4.6° | 0.1° |
| C7 | C1 | C2 | N | 176.1° | 180.0° |
| C1 | C7 | N1 | N2 | 1.8° | 0.0° |
| C7 | C1 | N | N2 | 1.0° | 0.0° |
| C7 | C1 | N | C | 173.6° | 180.0° |
| C1 | C7 | C6 | H3 | 179.4° | 180.0° |
| C7 | C1 | C2 | H6 | 178.3° | 180.0° |
| C2 | C1 | N | N2 | 177.5° | 179.9° |
| C2 | C1 | N | C | 2.8° | 0.0° |
| C1 | C2 | C3 | H5 | 178.7° | 180.0° |
| N1 | N2 | N | C1 | 0.0° | 0.0° |
| N1 | N2 | N | C | 174.9° | 180.0° |
| C1 | N | N2 | C | 174.9° | 180.0° |
| N | C1 | C2 | H6 | 5.6° | 0.0° |
| C1 | N | C | H7 | 173.8° | 90.0° |
| C1 | N | C | H8 | 66.2° | 150.0° |
| C1 | N | C | H9 | 53.7° | 30.0° |
| N2 | N | C | H7 | 0.0° | 90.0° |
| N2 | N | C | H8 | 120.0° | 30.0° |
| N2 | N | C | H9 | 120.0° | 150.0° |
| N | C | H7 | H8 | 120.0° | 120.0° |
| N | C | H7 | H9 | 120.0° | 120.0° |
| N | C | H8 | H9 | 120.0° | 119.9° |
| H1 | C5 | O | H4 | 61.9° | 60.0° |
| H2 | C5 | O | H4 | 61.9° | 60.0° |
| H5 | C3 | C2 | H6 | 1.3° | 0.1° |
| H7 | C | H8 | H9 | 120.0° | 120.1° |
