RY7
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| O2 | C2 | sing | 1.43Å | 1.42Å | |
| C1 | C2 | sing | 1.53Å | 1.54Å | |
| C1 | O1 | sing | 1.43Å | 1.40Å | |
| C1 | O5 | sing | 1.43Å | 1.43Å | |
| C2 | C3 | sing | 1.53Å | 1.54Å | |
| O5 | C5 | sing | 1.43Å | 1.45Å | |
| C3 | O3 | sing | 1.43Å | 1.42Å | |
| C3 | C4 | sing | 1.53Å | 1.54Å | |
| C5 | C4 | sing | 1.53Å | 1.54Å | |
| C5 | C6 | sing | 1.53Å | 1.52Å | |
| C4 | N4 | sing | 1.47Å | 1.48Å | |
| N4 | C1A | sing | 1.47Å | 1.48Å | |
| C1A | C7A | sing | 1.53Å | 1.54Å | |
| C1A | C2A | sing | 1.53Å | 1.53Å | |
| O2A | C2A | sing | 1.43Å | 1.42Å | |
| C7A | C5A | sing | 1.53Å | 1.55Å | |
| C2A | C3A | sing | 1.53Å | 1.53Å | |
| C5A | C6A | sing | 1.53Å | 1.53Å | |
| C5A | C4A | sing | 1.53Å | 1.54Å | |
| C3A | O3A | sing | 1.43Å | 1.42Å | |
| C3A | C4A | sing | 1.53Å | 1.53Å | |
| C6A | O6A | sing | 1.43Å | 1.43Å | |
| C4A | O4A | sing | 1.43Å | 1.43Å | |
| C1A | H1A | sing | 1.09Å | 1.10Å | |
| C2A | H2A | sing | 1.09Å | 1.10Å | |
| C3A | H3A | sing | 1.09Å | 1.10Å | |
| C4A | H4A | sing | 1.09Å | 1.10Å | |
| C5A | H5A | sing | 1.09Å | 1.10Å | |
| C6A | H6A1 | sing | 1.09Å | 1.10Å | |
| C6A | H6A2 | sing | 1.09Å | 1.10Å | |
| C7A | H7A1 | sing | 1.09Å | 1.10Å | |
| C7A | H7A2 | sing | 1.09Å | 1.10Å | |
| O2A | HOA2 | sing | 0.97Å | 0.95Å | |
| O3A | HOA3 | sing | 0.97Å | 0.95Å | |
| O4A | HOA4 | sing | 0.97Å | 0.95Å | |
| O6A | HOA6 | sing | 0.97Å | 0.95Å | |
| C1 | H1 | sing | 1.09Å | 1.10Å | |
| C2 | H2 | sing | 1.09Å | 1.10Å | |
| C3 | H3 | sing | 1.09Å | 1.10Å | |
| C4 | H4 | sing | 1.09Å | 1.10Å | |
| C5 | H5 | sing | 1.09Å | 1.10Å | |
| C6 | H62 | sing | 1.09Å | 1.10Å | |
| C6 | H63 | sing | 1.09Å | 1.10Å | |
| C6 | H61 | sing | 1.09Å | 1.10Å | |
| N4 | HN41 | sing | 1.01Å | 1.00Å | |
| O2 | HO2 | sing | 0.97Å | 0.95Å | |
| O3 | HO3 | sing | 0.97Å | 0.95Å | |
| O1 | HO1 | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O2 | C2 | C1 | 108.9° | 109.5° |
| O2 | C2 | C3 | 109.5° | 109.5° |
| O2 | C2 | H2 | 110.6° | 109.6° |
| C2 | O2 | HO2 | 109.5° | 113.9° |
| C2 | C1 | O1 | 105.7° | 109.5° |
| C2 | C1 | O5 | 110.0° | 109.5° |
| C1 | C2 | C3 | 109.8° | 109.1° |
| C2 | C1 | H1 | 109.1° | 109.5° |
| C1 | C2 | H2 | 109.1° | 109.5° |
| O1 | C1 | O5 | 110.3° | 109.4° |
| O1 | C1 | H1 | 111.0° | 109.5° |
| C1 | O1 | HO1 | 109.5° | 114.1° |
| C1 | O5 | C5 | 115.7° | 114.1° |
| O5 | C1 | H1 | 110.6° | 109.5° |
| C2 | C3 | O3 | 110.4° | 109.6° |
| C2 | C3 | C4 | 108.5° | 109.1° |
| C3 | C2 | H2 | 109.0° | 109.5° |
| C2 | C3 | H3 | 108.5° | 109.6° |
| O5 | C5 | C4 | 109.8° | 109.4° |
| O5 | C5 | C6 | 106.1° | 109.5° |
| O5 | C5 | H5 | 109.6° | 109.5° |
| O3 | C3 | C4 | 110.9° | 109.6° |
| O3 | C3 | H3 | 110.0° | 109.5° |
| C3 | O3 | HO3 | 109.5° | 114.1° |
| C3 | C4 | C5 | 106.6° | 109.2° |
| C3 | C4 | N4 | 111.2° | 109.6° |
| C4 | C3 | H3 | 108.5° | 109.6° |
| C3 | C4 | H4 | 108.9° | 109.5° |
| C4 | C5 | C6 | 114.2° | 109.5° |
| C5 | C4 | N4 | 111.6° | 109.5° |
| C5 | C4 | H4 | 108.8° | 109.6° |
| C4 | C5 | H5 | 108.3° | 109.5° |
| C6 | C5 | H5 | 108.7° | 109.5° |
| C5 | C6 | H62 | 109.5° | 109.5° |
| C5 | C6 | H63 | 109.4° | 109.5° |
| C5 | C6 | H61 | 109.5° | 109.4° |
| C4 | N4 | C1A | 115.3° | 111.1° |
| N4 | C4 | H4 | 109.6° | 109.5° |
| C4 | N4 | HN41 | 108.0° | 111.0° |
| N4 | C1A | C7A | 112.1° | 109.5° |
| N4 | C1A | C2A | 110.0° | 109.5° |
| N4 | C1A | H1A | 108.4° | 109.4° |
| C1A | N4 | HN41 | 108.0° | 111.0° |
| C7A | C1A | C2A | 110.8° | 109.5° |
| C1A | C7A | C5A | 115.7° | 109.4° |
| C7A | C1A | H1A | 107.7° | 109.5° |
| C1A | C7A | H7A1 | 107.9° | 109.4° |
| C1A | C7A | H7A2 | 107.9° | 109.5° |
| C1A | C2A | O2A | 109.8° | 109.5° |
| C1A | C2A | C3A | 110.1° | 109.4° |
| C2A | C1A | H1A | 107.8° | 109.5° |
| C1A | C2A | H2A | 108.7° | 109.5° |
| O2A | C2A | C3A | 109.1° | 109.5° |
| O2A | C2A | H2A | 110.3° | 109.5° |
| C2A | O2A | HOA2 | 109.5° | 114.0° |
| C7A | C5A | C6A | 110.5° | 109.4° |
| C7A | C5A | C4A | 112.0° | 109.5° |
| C7A | C5A | H5A | 107.8° | 109.4° |
| C5A | C7A | H7A1 | 107.9° | 109.4° |
| C5A | C7A | H7A2 | 107.9° | 109.5° |
| C2A | C3A | O3A | 109.4° | 109.4° |
| C2A | C3A | C4A | 110.4° | 109.5° |
| C3A | C2A | H2A | 108.8° | 109.5° |
| C2A | C3A | H3A | 108.8° | 109.5° |
| C6A | C5A | C4A | 110.4° | 109.5° |
| C5A | C6A | O6A | 111.6° | 109.4° |
| C6A | C5A | H5A | 108.1° | 109.5° |
| C5A | C6A | H6A1 | 108.9° | 109.5° |
| C5A | C6A | H6A2 | 108.9° | 109.5° |
| C5A | C4A | C3A | 111.3° | 109.5° |
| C5A | C4A | O4A | 109.8° | 109.4° |
| C5A | C4A | H4A | 108.3° | 109.5° |
| C4A | C5A | H5A | 108.0° | 109.5° |
| O3A | C3A | C4A | 109.2° | 109.5° |
| O3A | C3A | H3A | 110.3° | 109.4° |
| C3A | O3A | HOA3 | 109.5° | 114.0° |
| C3A | C4A | O4A | 109.2° | 109.5° |
| C4A | C3A | H3A | 108.8° | 109.5° |
| C3A | C4A | H4A | 108.5° | 109.5° |
| O6A | C6A | H6A1 | 108.9° | 109.4° |
| O6A | C6A | H6A2 | 108.9° | 109.4° |
| C6A | O6A | HOA6 | 109.5° | 114.0° |
| O4A | C4A | H4A | 109.8° | 109.4° |
| C4A | O4A | HOA4 | 109.5° | 114.0° |
| H6A1 | C6A | H6A2 | 109.5° | 109.5° |
| H7A1 | C7A | H7A2 | 109.5° | 109.5° |
| H62 | C6 | H63 | 109.5° | 109.5° |
| H62 | C6 | H61 | 109.5° | 109.5° |
| H63 | C6 | H61 | 109.5° | 109.5° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O2 | C2 | C1 | C3 | 119.9° | 119.9° |
| O2 | C2 | C1 | H2 | 120.8° | 120.2° |
| O2 | C2 | C1 | O1 | 55.3° | 57.5° |
| O2 | C2 | C1 | O5 | 174.4° | 177.5° |
| O2 | C2 | C3 | H2 | 121.1° | 120.2° |
| O2 | C2 | C3 | O3 | 59.5° | 63.2° |
| O2 | C2 | C3 | C4 | 178.8° | 176.9° |
| O2 | C2 | C1 | H1 | 64.1° | 62.5° |
| O2 | C2 | C3 | H3 | 61.1° | 56.9° |
| C2 | C1 | O1 | O5 | 118.9° | 120.0° |
| C2 | C1 | O1 | H1 | 118.2° | 120.0° |
| C2 | C1 | O5 | H1 | 120.6° | 120.0° |
| C1 | C2 | C3 | H2 | 119.4° | 119.9° |
| C2 | C1 | O5 | C5 | 56.0° | 61.2° |
| C1 | C2 | C3 | O3 | 179.0° | 176.9° |
| C1 | C2 | C3 | C4 | 59.3° | 57.0° |
| C1 | C2 | C3 | H3 | 58.4° | 63.0° |
| C1 | C2 | O2 | HO2 | 180.0° | 60.0° |
| C2 | C1 | O1 | HO1 | 180.0° | 180.0° |
| O1 | C1 | O5 | H1 | 123.2° | 120.0° |
| O1 | C1 | C2 | C3 | 64.5° | 62.4° |
| O1 | C1 | O5 | C5 | 60.3° | 58.9° |
| O1 | C1 | C2 | H2 | 176.1° | 177.7° |
| O5 | C1 | C2 | C3 | 54.5° | 57.6° |
| C1 | O5 | C5 | C4 | 59.6° | 61.1° |
| C1 | O5 | C5 | C6 | 176.5° | 178.9° |
| O5 | C1 | C2 | H2 | 64.8° | 62.3° |
| C1 | O5 | C5 | H5 | 59.3° | 58.9° |
| O5 | C1 | O1 | HO1 | 61.2° | 60.0° |
| C2 | C3 | O3 | C4 | 120.3° | 119.6° |
| C2 | C3 | O3 | H3 | 119.7° | 120.2° |
| C2 | C3 | C4 | H3 | 117.7° | 119.9° |
| C2 | C3 | C4 | C5 | 61.2° | 57.0° |
| C2 | C3 | C4 | N4 | 177.0° | 176.9° |
| C3 | C2 | C1 | H1 | 176.0° | 177.6° |
| C2 | C3 | C4 | H4 | 56.1° | 63.0° |
| C3 | C2 | O2 | HO2 | 60.0° | 179.7° |
| C2 | C3 | O3 | HO3 | 180.0° | 59.9° |
| O5 | C5 | C4 | C3 | 60.0° | 57.6° |
| O5 | C5 | C4 | C6 | 119.0° | 120.0° |
| O5 | C5 | C4 | H5 | 119.7° | 120.0° |
| O5 | C5 | C6 | H5 | 117.8° | 120.0° |
| O5 | C5 | C4 | N4 | 178.5° | 177.5° |
| C5 | O5 | C1 | H1 | 176.5° | 178.9° |
| O5 | C5 | C4 | H4 | 57.4° | 62.4° |
| O5 | C5 | C6 | H62 | 180.0° | 66.3° |
| O5 | C5 | C6 | H63 | 60.0° | 53.7° |
| O5 | C5 | C6 | H61 | 60.0° | 173.7° |
| O3 | C3 | C4 | H3 | 121.0° | 120.1° |
| O3 | C3 | C4 | C5 | 177.5° | 176.9° |
| O3 | C3 | C4 | N4 | 55.6° | 63.2° |
| O3 | C3 | C2 | H2 | 61.6° | 57.0° |
| O3 | C3 | C4 | H4 | 65.3° | 56.9° |
| C3 | C4 | C5 | N4 | 121.6° | 120.0° |
| C3 | C4 | C5 | H4 | 117.3° | 119.9° |
| C3 | C4 | C5 | C6 | 179.0° | 177.5° |
| C3 | C4 | N4 | H4 | 120.4° | 120.1° |
| C3 | C4 | N4 | C1A | 125.4° | 139.0° |
| C4 | C3 | C2 | H2 | 60.1° | 62.9° |
| C3 | C4 | C5 | H5 | 59.7° | 62.4° |
| C3 | C4 | N4 | HN41 | 113.8° | 97.0° |
| C4 | C3 | O3 | HO3 | 59.8° | 179.5° |
| C4 | C5 | C6 | H5 | 121.1° | 120.0° |
| C5 | C4 | N4 | H4 | 120.6° | 120.2° |
| C5 | C4 | N4 | C1A | 115.7° | 101.3° |
| C5 | C4 | C3 | H3 | 56.5° | 63.0° |
| C4 | C5 | C6 | H62 | 58.9° | 53.6° |
| C4 | C5 | C6 | H63 | 61.1° | 173.6° |
| C4 | C5 | C6 | H61 | 179.0° | 66.4° |
| C5 | C4 | N4 | HN41 | 5.2° | 22.7° |
| C6 | C5 | C4 | N4 | 59.4° | 62.5° |
| C6 | C5 | C4 | H4 | 61.7° | 57.6° |
| C5 | C6 | H62 | H63 | 120.0° | 120.0° |
| C5 | C6 | H62 | H61 | 120.0° | 120.0° |
| C5 | C6 | H63 | H61 | 120.0° | 120.0° |
| C4 | N4 | C1A | HN41 | 120.8° | 124.0° |
| C4 | N4 | C1A | C7A | 99.6° | 149.0° |
| C4 | N4 | C1A | C2A | 136.7° | 90.9° |
| C4 | N4 | C1A | H1A | 19.1° | 29.1° |
| N4 | C4 | C3 | H3 | 65.4° | 57.0° |
| N4 | C4 | C5 | H5 | 61.9° | 57.5° |
| N4 | C1A | C7A | C2A | 123.2° | 120.1° |
| N4 | C1A | C7A | H1A | 119.1° | 119.9° |
| N4 | C1A | C2A | H1A | 118.0° | 120.0° |
| N4 | C1A | C2A | O2A | 51.6° | 60.0° |
| N4 | C1A | C7A | C5A | 76.1° | 60.1° |
| N4 | C1A | C2A | C3A | 68.6° | 60.0° |
| N4 | C1A | C2A | H2A | 172.3° | 180.0° |
| N4 | C1A | C7A | H7A1 | 163.0° | 180.0° |
| N4 | C1A | C7A | H7A2 | 44.8° | 60.0° |
| C1A | N4 | C4 | H4 | 4.9° | 18.9° |
| C7A | C1A | C2A | H1A | 117.6° | 120.0° |
| C7A | C1A | C2A | O2A | 176.0° | 180.0° |
| C1A | C7A | C5A | H7A1 | 120.9° | 119.9° |
| C1A | C7A | C5A | H7A2 | 120.9° | 120.0° |
| C7A | C1A | C2A | C3A | 55.8° | 60.0° |
| C1A | C7A | C5A | C6A | 167.3° | 180.0° |
| C1A | C7A | C5A | C4A | 43.8° | 60.0° |
| C7A | C1A | C2A | H2A | 63.2° | 60.0° |
| C1A | C7A | C5A | H5A | 74.8° | 60.1° |
| C1A | C7A | H7A1 | H7A2 | 117.2° | 120.0° |
| C7A | C1A | N4 | HN41 | 21.3° | 25.0° |
| C1A | C2A | O2A | C3A | 120.8° | 120.0° |
| C1A | C2A | O2A | H2A | 119.8° | 120.0° |
| C2A | C1A | C7A | C5A | 47.1° | 60.0° |
| C1A | C2A | C3A | H2A | 119.1° | 120.0° |
| C1A | C2A | C3A | O3A | 176.4° | 180.0° |
| C1A | C2A | C3A | C4A | 63.4° | 60.0° |
| C1A | C2A | C3A | H3A | 55.9° | 60.0° |
| C2A | C1A | C7A | H7A1 | 73.8° | 59.9° |
| C2A | C1A | C7A | H7A2 | 168.0° | 179.9° |
| C1A | C2A | O2A | HOA2 | 180.0° | 179.9° |
| C2A | C1A | N4 | HN41 | 102.4° | 145.1° |
| O2A | C2A | C3A | H2A | 120.4° | 120.0° |
| O2A | C2A | C3A | O3A | 55.8° | 60.0° |
| O2A | C2A | C3A | C4A | 176.0° | 180.0° |
| O2A | C2A | C1A | H1A | 66.4° | 60.0° |
| O2A | C2A | C3A | H3A | 64.7° | 60.0° |
| C7A | C5A | C6A | C4A | 124.4° | 120.0° |
| C7A | C5A | C6A | H5A | 117.7° | 119.9° |
| C7A | C5A | C4A | H5A | 118.5° | 120.0° |
| C7A | C5A | C4A | C3A | 49.1° | 60.0° |
| C7A | C5A | C6A | O6A | 62.9° | 175.0° |
| C7A | C5A | C4A | O4A | 170.1° | 180.0° |
| C5A | C7A | C1A | H1A | 164.8° | 180.0° |
| C7A | C5A | C4A | H4A | 70.0° | 60.0° |
| C7A | C5A | C6A | H6A1 | 57.4° | 65.1° |
| C7A | C5A | C6A | H6A2 | 176.8° | 55.0° |
| C5A | C7A | H7A1 | H7A2 | 117.1° | 120.1° |
| C2A | C3A | C4A | C5A | 59.9° | 60.0° |
| C2A | C3A | O3A | C4A | 120.9° | 120.0° |
| C2A | C3A | O3A | H3A | 119.6° | 119.9° |
| C2A | C3A | C4A | H3A | 119.3° | 120.0° |
| C2A | C3A | C4A | O4A | 178.8° | 180.0° |
| C3A | C2A | C1A | H1A | 173.4° | 180.0° |
| C2A | C3A | C4A | H4A | 59.2° | 60.0° |
| C3A | C2A | O2A | HOA2 | 59.2° | 60.0° |
| C2A | C3A | O3A | HOA3 | 180.0° | 180.0° |
| C6A | C5A | C4A | H5A | 117.9° | 120.1° |
| C6A | C5A | C4A | C3A | 172.7° | 180.0° |
| C5A | C6A | O6A | H6A1 | 120.3° | 120.0° |
| C5A | C6A | O6A | H6A2 | 120.3° | 120.0° |
| C6A | C5A | C4A | O4A | 66.3° | 60.1° |
| C6A | C5A | C4A | H4A | 53.5° | 59.9° |
| C5A | C6A | H6A1 | H6A2 | 119.0° | 120.1° |
| C6A | C5A | C7A | H7A1 | 46.4° | 60.0° |
| C6A | C5A | C7A | H7A2 | 71.7° | 60.0° |
| C5A | C6A | O6A | HOA6 | 180.0° | 180.0° |
| C5A | C4A | C3A | O3A | 179.8° | 180.0° |
| C5A | C4A | C3A | O4A | 121.4° | 120.0° |
| C5A | C4A | C3A | H4A | 119.0° | 120.1° |
| C4A | C5A | C6A | O6A | 61.5° | 65.0° |
| C5A | C4A | O4A | H4A | 118.9° | 120.0° |
| C5A | C4A | C3A | H3A | 59.4° | 60.0° |
| C4A | C5A | C6A | H6A1 | 178.2° | 54.9° |
| C4A | C5A | C6A | H6A2 | 58.8° | 175.0° |
| C4A | C5A | C7A | H7A1 | 77.1° | 60.0° |
| C4A | C5A | C7A | H7A2 | 164.8° | 180.0° |
| C5A | C4A | O4A | HOA4 | 180.0° | 180.0° |
| O3A | C3A | C4A | H3A | 120.4° | 120.0° |
| O3A | C3A | C4A | O4A | 58.4° | 60.0° |
| O3A | C3A | C2A | H2A | 64.5° | 60.0° |
| O3A | C3A | C4A | H4A | 61.2° | 60.0° |
| C3A | C4A | O4A | H4A | 118.8° | 120.0° |
| C4A | C3A | C2A | H2A | 55.6° | 60.0° |
| C3A | C4A | C5A | H5A | 69.4° | 60.0° |
| C4A | C3A | O3A | HOA3 | 59.1° | 60.0° |
| C3A | C4A | O4A | HOA4 | 57.7° | 60.0° |
| O6A | C6A | C5A | H5A | 179.4° | 55.1° |
| O6A | C6A | H6A1 | H6A2 | 119.0° | 120.0° |
| O4A | C4A | C3A | H3A | 61.9° | 60.0° |
| O4A | C4A | C5A | H5A | 51.6° | 60.0° |
| H1A | C1A | C2A | H2A | 54.3° | 60.0° |
| H1A | C1A | C7A | H7A1 | 43.9° | 60.1° |
| H1A | C1A | C7A | H7A2 | 74.3° | 59.9° |
| H1A | C1A | N4 | HN41 | 140.0° | 94.9° |
| H2A | C2A | C3A | H3A | 174.9° | 179.9° |
| H2A | C2A | O2A | HOA2 | 60.2° | 60.0° |
| H3A | C3A | C4A | H4A | 178.5° | 179.9° |
| H3A | C3A | O3A | HOA3 | 60.3° | 60.1° |
| H4A | C4A | C5A | H5A | 171.4° | 180.0° |
| H4A | C4A | O4A | HOA4 | 61.1° | 59.9° |
| H5A | C5A | C6A | H6A1 | 60.3° | 175.0° |
| H5A | C5A | C6A | H6A2 | 59.1° | 64.9° |
| H5A | C5A | C7A | H7A1 | 164.3° | 180.0° |
| H5A | C5A | C7A | H7A2 | 46.1° | 60.0° |
| H6A1 | C6A | O6A | HOA6 | 59.7° | 60.0° |
| H6A2 | C6A | O6A | HOA6 | 59.7° | 60.0° |
| H1 | C1 | C2 | H2 | 56.7° | 57.7° |
| H1 | C1 | O1 | HO1 | 61.8° | 59.9° |
| H2 | C2 | C3 | H3 | 177.8° | 177.1° |
| H2 | C2 | O2 | HO2 | 60.2° | 60.2° |
| H3 | C3 | C4 | H4 | 173.8° | 177.1° |
| H3 | C3 | O3 | HO3 | 60.3° | 60.3° |
| H4 | C4 | C5 | H5 | 177.0° | 177.6° |
| H4 | C4 | N4 | HN41 | 125.8° | 142.8° |
| H5 | C5 | C6 | H62 | 62.2° | 173.7° |
| H5 | C5 | C6 | H63 | 177.8° | 66.3° |
| H5 | C5 | C6 | H61 | 57.9° | 53.7° |
| H62 | C6 | H63 | H61 | 120.0° | 120.0° |
