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RY

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
OP1Pdoub1.48Å1.48Å
O2C2doub1.22Å1.22Å
O3'C3'sing1.43Å1.43Å
O2'C2'sing1.43Å1.42Å
POP2sing1.61Å1.49Å
PO5'sing1.61Å1.63Å
C2N3sing1.34Å1.33Å
C2N1sing1.35Å1.40Å
C3'C4'sing1.54Å1.55Å
C3'C2'sing1.55Å1.55Å
C4'O4'sing1.44Å1.43Å
C4'C5'sing1.53Å1.54Å
C1'C2'sing1.55Å1.52Å
C1'O4'sing1.44Å1.41Å
C1'N1sing1.47Å1.49Å
N3C4sing1.39Å1.30Å
N1C6sing1.47Å1.37Å
C5'O5'sing1.43Å1.43Å
C4N4sing1.39Å1.31Å
C4C5doub1.33Å1.42Å
C6C5sing1.51Å1.36Å
POP3sing1.61Å1.61Å
C5'H5''sing1.09Å1.10Å
C5'H5'sing1.09Å1.10Å
C4'H4'sing1.09Å1.10Å
C3'H3'sing1.09Å1.10Å
O3'H1sing0.97Å0.95Å
C2'H2'sing1.09Å1.10Å
O2'HO2'sing0.97Å0.95Å
C1'H1'sing1.09Å1.10Å
N3H3sing0.97Å1.00Å
N4H41sing0.97Å1.00Å
N4H42sing0.97Å1.00Å
C5H5sing1.08Å1.08Å
C6H6sing1.09Å1.10Å
C6H2sing1.09Å1.10Å
OP2H4sing0.97Å0.95Å
OP3H7sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
OP1POP2116.5°109.5°
OP1PO5'109.0°109.4°
OP1POP3107.2°109.5°
O2C2N3116.5°119.0°
O2C2N1124.0°119.0°
O3'C3'C4'113.9°110.5°
O3'C3'C2'110.1°110.5°
O3'C3'H3'111.0°110.5°
C3'O3'H1109.5°114.0°
O2'C2'C3'115.3°110.9°
O2'C2'C1'110.8°111.0°
O2'C2'H2'110.5°110.8°
C2'O2'HO2'109.5°114.0°
OP2PO5'108.4°109.5°
OP2POP3108.2°109.5°
POP2H4109.5°114.0°
PO5'C5'124.4°123.0°
O5'POP3107.3°109.4°
N3C2N1119.4°121.9°
C2N3C4122.3°123.4°
C2N3H3118.8°118.3°
C2N1C1'119.5°120.8°
C2N1C6119.1°118.5°
C4'C3'C2'103.0°104.2°
C3'C4'O4'104.6°107.3°
C3'C4'C5'113.8°109.9°
C3'C4'H4'108.3°110.0°
C4'C3'H3'109.2°110.5°
C3'C2'C1'102.0°102.1°
C2'C3'H3'109.3°110.5°
C3'C2'H2'108.7°110.9°
O4'C4'C5'111.7°109.9°
C4'O4'C1'104.8°107.0°
O4'C4'H4'109.9°109.9°
C4'C5'O5'114.9°109.5°
C4'C5'H5''108.1°109.5°
C4'C5'H5'108.1°109.4°
C5'C4'H4'108.4°109.9°
C2'C1'O4'102.0°103.5°
C2'C1'N1114.1°110.6°
C1'C2'H2'109.1°110.9°
C2'C1'H1'108.4°110.6°
O4'C1'N1113.4°110.6°
O4'C1'H1'109.8°110.6°
C1'N1C6121.4°120.8°
N1C1'H1'108.8°110.7°
N3C4N4119.2°119.5°
N3C4C5121.1°121.1°
C4N3H3118.9°118.3°
N1C6C5120.2°117.2°
N1C6H6106.7°107.9°
N1C6H2106.7°107.9°
O5'C5'H5''108.1°109.5°
O5'C5'H5'108.1°109.5°
N4C4C5119.7°119.4°
C4N4H41109.5°119.9°
C4N4H42109.5°120.0°
C4C5C6117.7°118.0°
C4C5H5121.1°121.0°
C6C5H5121.2°121.0°
C5C6H6106.7°108.1°
C5C6H2106.7°107.7°
POP3H7109.5°114.0°
H5''C5'H5'109.5°109.5°
H41N4H42109.5°120.0°
H6C6H2109.5°107.7°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
OP1POP2O5'123.2°120.0°
OP1POP2OP3120.7°120.1°
OP1PO5'OP3115.7°120.0°
OP1PO5'C5'5.3°55.0°
OP1POP2H40.0°60.0°
OP1POP3H70.0°180.0°
O2C2N3N1177.5°180.0°
O2C2N1C1'4.3°0.1°
O2C2N3C4176.4°180.0°
O2C2N1C6174.2°179.7°
O2C2N3H33.6°0.0°
O3'C3'C2'O2'14.4°20.5°
O3'C3'C4'C2'119.3°118.7°
O3'C3'C4'H3'124.7°122.6°
O3'C3'C2'H3'122.1°122.7°
O3'C3'C4'O4'131.7°120.7°
O3'C3'C4'C5'106.0°119.9°
O3'C3'C2'C1'105.8°97.8°
O3'C3'C4'H4'14.6°1.2°
O3'C3'C2'H2'139.1°144.0°
O2'C2'C3'C4'136.2°139.1°
O2'C2'C3'C1'120.2°118.3°
O2'C2'C3'H2'124.7°123.6°
O2'C2'C1'H2'121.9°123.6°
O2'C2'C1'O4'163.0°155.3°
O2'C2'C1'N174.3°86.2°
O2'C2'C3'H3'107.8°102.2°
O2'C2'C1'H1'47.1°36.8°
OP2PO5'OP3116.6°120.0°
OP2PO5'C5'132.9°175.0°
OP2POP3H7126.3°60.0°
PO5'C5'C4'77.0°180.0°
PO5'C5'H5''43.8°60.0°
PO5'C5'H5'162.2°60.0°
O5'POP2H4123.2°180.0°
O5'POP3H7116.9°60.0°
N3C2N1C1'178.4°180.0°
C2N3C4H3180.0°180.0°
N3C2N1C63.1°0.3°
C2N3C4N4179.3°180.0°
C2N3C4C52.0°0.0°
C2N1C1'C2'107.7°64.8°
C2N1C1'O4'136.1°49.3°
C2N1C1'C6178.5°179.8°
N1C2N3C41.1°0.0°
C2N1C6C52.0°0.5°
C2N1C1'H1'13.6°172.3°
N1C2N3H3178.9°180.0°
C2N1C6H6123.6°121.7°
C2N1C6H2119.5°122.2°
C4'C3'C2'H3'116.0°118.7°
C3'C4'O4'C5'123.6°119.4°
C3'C4'O4'H4'116.0°119.6°
C3'C4'C5'H4'120.5°121.2°
C4'C3'C2'C1'16.0°20.8°
C3'C4'O4'C1'39.1°26.5°
C3'C4'C5'O5'179.0°175.7°
C3'C4'C5'H5''60.2°64.3°
C3'C4'C5'H5'58.2°55.7°
C4'C3'O3'H1180.0°180.0°
C4'C3'C2'H2'99.1°97.3°
C2'C3'C4'O4'12.5°2.1°
C2'C3'C4'C5'134.7°121.5°
C3'C2'C1'H2'114.9°118.2°
C3'C2'C1'O4'39.7°37.0°
C3'C2'C1'N1162.4°155.5°
C2'C3'C4'H4'104.7°117.5°
C2'C3'O3'H164.9°65.3°
C3'C2'O2'HO2'180.0°61.4°
C3'C2'C1'H1'76.2°81.5°
O4'C4'C5'H4'121.3°121.0°
C4'O4'C1'C2'50.1°40.0°
C4'O4'C1'N1173.3°158.5°
O4'C4'C5'O5'60.8°66.4°
O4'C4'C5'H5''178.4°53.6°
O4'C4'C5'H5'60.0°173.6°
O4'C4'C3'H3'103.6°116.7°
C4'O4'C1'H1'64.8°78.4°
C5'C4'O4'C1'162.7°145.9°
C4'C5'O5'H5''120.8°120.0°
C4'C5'O5'H5'120.8°120.0°
C4'C5'H5''H5'117.5°120.0°
C5'C4'C3'H3'18.6°2.8°
C2'C1'O4'N1123.2°118.5°
C2'C1'O4'H1'114.9°118.5°
C2'C1'N1H1'121.2°122.9°
C2'C1'N1C670.8°115.0°
C1'C2'C3'H3'132.1°139.5°
C1'C2'O2'HO2'64.8°174.2°
O4'C1'N1H1'122.5°123.0°
O4'C1'N1C645.4°130.9°
C1'O4'C4'H4'76.9°93.1°
O4'C1'C2'H2'75.1°81.2°
C1'N1C6C5179.5°179.7°
N1C1'C2'H2'47.5°37.4°
C1'N1C6H657.9°58.1°
C1'N1C6H259.0°58.0°
N3C4N4C5178.7°180.0°
N3C4C5C62.9°0.3°
N3C4N4H41180.0°0.1°
N3C4N4H4260.0°180.0°
N3C4C5H5177.0°180.0°
N1C6C5C40.9°0.5°
N1C6C5H6121.5°122.1°
N1C6C5H2121.5°121.8°
C6N1C1'H1'167.9°7.9°
N1C6C5H5179.1°179.7°
N1C6H6H2115.1°116.2°
C5'O5'POP3110.5°65.0°
O5'C5'H5''H5'117.5°120.0°
O5'C5'C4'H4'60.5°54.5°
N4C4C5C6178.3°179.7°
N4C4N3H30.6°0.0°
C4N4H41H42120.0°180.0°
N4C4C5H51.7°0.0°
C4C5C6H5180.0°179.7°
C5C4N3H3178.1°180.0°
C5C4N4H411.3°180.0°
C5C4N4H42118.7°0.0°
C4C5C6H6120.6°121.6°
C4C5C6H2122.4°122.4°
C5C6H6H2115.1°116.1°
OP3POP2H4120.7°60.0°
H5''C5'C4'H4'60.3°174.6°
H5'C5'C4'H4'178.8°65.5°
H4'C4'C3'H3'139.2°123.8°
H3'C3'O3'H156.2°57.4°
H3'C3'C2'H2'16.9°21.4°
H2'C2'O2'HO2'56.2°62.2°
H2'C2'C1'H1'169.0°160.3°
H5C5C6H659.4°58.2°
H5C5C6H257.6°57.9°

217705

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