RX9
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
O | C | doub | 1.21Å | 1.24Å | |
C | CA | sing | 1.48Å | 1.42Å | |
CD1 | CG1 | sing | 1.53Å | 1.49Å | |
CG1 | CB | sing | 1.51Å | 1.51Å | |
CA | CB | doub | 1.34Å | 1.40Å | |
CA | N | sing | 1.40Å | 1.42Å | |
CB | CG2 | sing | 1.51Å | 1.50Å | |
C | OXT | sing | 1.35Å | 1.34Å | |
N | H | sing | 0.97Å | 1.00Å | |
N | H2 | sing | 0.97Å | 1.00Å | |
CG1 | HG12 | sing | 1.09Å | 1.10Å | |
CG1 | HG13 | sing | 1.09Å | 1.10Å | |
CG2 | HG21 | sing | 1.09Å | 1.10Å | |
CG2 | HG22 | sing | 1.09Å | 1.10Å | |
CG2 | HG23 | sing | 1.09Å | 1.10Å | |
CD1 | HD11 | sing | 1.09Å | 1.10Å | |
CD1 | HD12 | sing | 1.09Å | 1.10Å | |
CD1 | HD13 | sing | 1.09Å | 1.10Å | |
OXT | HXT | sing | 0.97Å | 0.95Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
O | C | CA | 120.3° | 120.0° |
O | C | OXT | 122.9° | 120.0° |
C | CA | CB | 126.3° | 120.0° |
C | CA | N | 116.3° | 120.0° |
CA | C | OXT | 116.8° | 120.0° |
CD1 | CG1 | CB | 115.9° | 109.5° |
CD1 | CG1 | HG12 | 107.8° | 109.4° |
CD1 | CG1 | HG13 | 107.9° | 109.5° |
CG1 | CD1 | HD11 | 109.5° | 109.5° |
CG1 | CD1 | HD12 | 109.5° | 109.5° |
CG1 | CD1 | HD13 | 109.5° | 109.5° |
CG1 | CB | CA | 124.9° | 120.0° |
CG1 | CB | CG2 | 113.7° | 120.0° |
CB | CG1 | HG12 | 107.8° | 109.5° |
CB | CG1 | HG13 | 107.9° | 109.5° |
CB | CA | N | 117.5° | 120.0° |
CA | CB | CG2 | 121.4° | 120.0° |
CA | N | H | 109.5° | 119.9° |
CA | N | H2 | 109.5° | 120.0° |
CB | CG2 | HG21 | 109.5° | 109.4° |
CB | CG2 | HG22 | 109.5° | 109.5° |
CB | CG2 | HG23 | 109.4° | 109.5° |
C | OXT | HXT | 109.5° | 117.0° |
H | N | H2 | 109.5° | 120.0° |
HG12 | CG1 | HG13 | 109.5° | 109.5° |
HG21 | CG2 | HG22 | 109.5° | 109.5° |
HG21 | CG2 | HG23 | 109.5° | 109.4° |
HG22 | CG2 | HG23 | 109.5° | 109.5° |
HD11 | CD1 | HD12 | 109.4° | 109.5° |
HD11 | CD1 | HD13 | 109.5° | 109.4° |
HD12 | CD1 | HD13 | 109.5° | 109.5° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
O | C | CA | OXT | 179.6° | 180.0° |
O | C | CA | CB | 56.8° | 6.6° |
O | C | CA | N | 122.6° | 173.3° |
O | C | OXT | HXT | 0.0° | 0.0° |
C | CA | CB | CG1 | 0.9° | 7.6° |
C | CA | CB | N | 179.4° | 179.9° |
C | CA | CB | CG2 | 177.7° | 172.4° |
C | CA | N | H | 180.0° | 180.0° |
C | CA | N | H2 | 60.0° | 0.2° |
CA | C | OXT | HXT | 179.6° | 180.0° |
CD1 | CG1 | CB | HG12 | 120.9° | 120.0° |
CD1 | CG1 | CB | HG13 | 120.9° | 120.0° |
CD1 | CG1 | CB | CA | 72.4° | 92.1° |
CD1 | CG1 | CB | CG2 | 108.9° | 87.9° |
CD1 | CG1 | HG12 | HG13 | 117.1° | 120.0° |
CG1 | CD1 | HD11 | HD12 | 120.0° | 120.1° |
CG1 | CD1 | HD11 | HD13 | 120.0° | 120.0° |
CG1 | CD1 | HD12 | HD13 | 120.0° | 120.1° |
CG1 | CB | CA | CG2 | 178.6° | 180.0° |
CG1 | CB | CA | N | 179.7° | 172.4° |
CB | CG1 | HG12 | HG13 | 117.1° | 120.0° |
CG1 | CB | CG2 | HG21 | 180.0° | 90.0° |
CG1 | CB | CG2 | HG22 | 60.0° | 30.0° |
CG1 | CB | CG2 | HG23 | 60.0° | 150.0° |
CB | CG1 | CD1 | HD11 | 180.0° | 60.1° |
CB | CG1 | CD1 | HD12 | 60.0° | 60.0° |
CB | CG1 | CD1 | HD13 | 60.0° | 180.0° |
CB | CA | C | OXT | 123.6° | 173.4° |
CB | CA | N | H | 0.6° | 0.1° |
CB | CA | N | H2 | 119.5° | 179.8° |
CA | CB | CG1 | HG12 | 166.7° | 147.9° |
CA | CB | CG1 | HG13 | 48.5° | 27.9° |
CA | CB | CG2 | HG21 | 1.3° | 90.0° |
CA | CB | CG2 | HG22 | 121.3° | 150.0° |
CA | CB | CG2 | HG23 | 118.7° | 30.0° |
N | CA | CB | CG2 | 1.7° | 7.6° |
N | CA | C | OXT | 57.0° | 6.7° |
CA | N | H | H2 | 120.0° | 179.8° |
CG2 | CB | CG1 | HG12 | 12.0° | 32.1° |
CG2 | CB | CG1 | HG13 | 130.1° | 152.1° |
CB | CG2 | HG21 | HG22 | 120.0° | 120.0° |
CB | CG2 | HG21 | HG23 | 120.0° | 120.0° |
CB | CG2 | HG22 | HG23 | 120.0° | 120.0° |
HG12 | CG1 | CD1 | HD11 | 59.1° | 180.0° |
HG12 | CG1 | CD1 | HD12 | 60.9° | 60.0° |
HG12 | CG1 | CD1 | HD13 | 179.1° | 60.0° |
HG13 | CG1 | CD1 | HD11 | 59.1° | 60.0° |
HG13 | CG1 | CD1 | HD12 | 179.0° | 180.0° |
HG13 | CG1 | CD1 | HD13 | 60.9° | 59.9° |
HG21 | CG2 | HG22 | HG23 | 120.0° | 120.0° |
HD11 | CD1 | HD12 | HD13 | 120.0° | 119.9° |