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RVK

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
N1C2doub1.32Å1.32ÅAromatic
N1C6sing1.33Å1.36ÅAromatic
N6C6sing1.38Å1.33Å
C2N3sing1.32Å1.31ÅAromatic
C6C5doub1.40Å1.38ÅAromatic
N3C4doub1.33Å1.34ÅAromatic
C5C4sing1.41Å1.37ÅAromatic
C5N7sing1.35Å1.37ÅAromatic
C4N9sing1.37Å1.37ÅAromatic
N7C8doub1.30Å1.30ÅAromatic
N9C8sing1.36Å1.37ÅAromatic
N9C1'sing1.46Å1.46Å
C1'O4'sing1.44Å1.40Å
C1'C2'sing1.55Å1.53Å
O4'C4'sing1.44Å1.44Å
O2'C2'sing1.43Å1.40Å
C2'C3'sing1.55Å1.51Å
C4'C3'sing1.54Å1.53Å
C4'C5'sing1.53Å1.50Å
C3'O3'sing1.43Å1.42Å
C5'O5'sing1.43Å1.42Å
O5'PAsing1.61Å1.57Å
C5DC4Dsing1.53Å1.50Å
C5DO5Dsing1.43Å1.48Å
O2BPBdoub1.48Å1.47Å
C4DO4Dsing1.44Å1.41Å
C4DC3Dsing1.55Å1.52Å
O3DC3Dsing1.43Å1.44Å
PAO2Adoub1.48Å1.49Å
PAO1Asing1.61Å1.48Å
PAO3Asing1.61Å1.60Å
O4DC1Dsing1.44Å1.45Å
C3DC2Dsing1.55Å1.55Å
O5DPBsing1.61Å1.61Å
PBO3Asing1.61Å1.58Å
PBO1Bsing1.61Å1.46Å
O1DC1Dsing1.43Å1.47Å
O1DC1sing1.43Å1.44Å
C1DC2Dsing1.54Å1.52Å
C2DO2Dsing1.43Å1.42Å
C1H1sing1.09Å1.10Å
C1H2sing1.09Å1.10Å
C1H3sing1.09Å1.10Å
C2H4sing1.08Å1.08Å
C1'H5sing1.09Å1.10Å
C1DH6sing1.09Å1.10Å
C2'H7sing1.09Å1.10Å
C2DH8sing1.09Å1.10Å
C3'H9sing1.09Å1.10Å
C3DH10sing1.09Å1.10Å
C4'H11sing1.09Å1.10Å
C4DH12sing1.09Å1.10Å
C5'H13sing1.09Å1.10Å
C5'H14sing1.09Å1.10Å
C5DH15sing1.09Å1.10Å
C5DH16sing1.09Å1.10Å
C8H17sing1.08Å1.08Å
N6H18sing0.97Å1.00Å
N6H19sing0.97Å1.00Å
O1AH20sing0.97Å0.95Å
O1BH21sing0.97Å0.95Å
O2'H22sing0.97Å0.95Å
O2DH23sing0.97Å0.95Å
O3'H24sing0.97Å0.95Å
O3DH25sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C2N1C6119.4°121.2°
N1C2N3127.9°122.4°
N1C2H4116.1°118.8°
N1C6N6120.6°120.8°
N1C6C5117.6°118.5°
N6C6C5121.8°120.7°
C6N6H18109.5°120.0°
C6N6H19109.4°120.0°
C2N3C4111.5°120.7°
N3C2H4116.1°118.8°
C6C5C4116.6°118.1°
C6C5N7131.0°134.7°
N3C4C5127.0°119.1°
N3C4N9128.0°134.9°
C4C5N7112.4°107.1°
C5C4N9104.9°106.0°
C5N7C8102.7°109.4°
C4N9C8105.5°107.5°
C4N9C1'131.0°126.3°
N7C8N9114.5°110.0°
N7C8H17122.8°124.9°
C8N9C1'123.5°126.2°
N9C8H17122.7°125.1°
N9C1'O4'108.5°110.4°
N9C1'C2'113.3°110.4°
N9C1'H5109.4°110.4°
O4'C1'C2'106.8°104.8°
C1'O4'C4'108.1°105.3°
O4'C1'H5110.3°110.4°
C1'C2'O2'110.8°110.5°
C1'C2'C3'103.6°104.0°
C2'C1'H5108.6°110.4°
C1'C2'H7109.3°110.5°
O4'C4'C3'104.0°104.8°
O4'C4'C5'108.0°110.4°
O4'C4'H11109.3°110.5°
O2'C2'C3'112.2°110.5°
O2'C2'H7111.2°110.6°
C2'O2'H22109.5°114.0°
C2'C3'C4'98.7°104.1°
C2'C3'O3'111.5°110.5°
C3'C2'H7109.5°110.5°
C2'C3'H9109.9°110.5°
C3'C4'C5'118.7°110.4°
C4'C3'O3'115.2°110.5°
C4'C3'H9109.7°110.6°
C3'C4'H11108.1°110.4°
C4'C5'O5'111.1°109.5°
C5'C4'H11108.4°110.3°
C4'C5'H13109.1°109.4°
C4'C5'H14109.1°109.5°
O3'C3'H9111.3°110.4°
C3'O3'H24109.5°114.0°
C5'O5'PA110.4°123.0°
O5'C5'H13109.1°109.5°
O5'C5'H14109.1°109.5°
O5'PAO2A103.2°109.5°
O5'PAO1A106.1°109.5°
O5'PAO3A112.9°109.4°
C4DC5DO5D113.0°109.5°
C5DC4DO4D104.1°110.6°
C5DC4DC3D114.7°110.6°
C5DC4DH12110.6°110.6°
C4DC5DH15108.6°109.4°
C4DC5DH16108.6°109.4°
C5DO5DPB126.8°123.0°
O5DC5DH15108.6°109.5°
O5DC5DH16108.6°109.5°
O2BPBO5D105.2°109.4°
O2BPBO3A108.3°109.5°
O2BPBO1B129.2°109.5°
O4DC4DC3D105.0°103.5°
C4DO4DC1D109.9°107.0°
O4DC4DH12111.9°110.7°
C4DC3DO3D109.1°110.9°
C4DC3DC2D102.3°102.1°
C4DC3DH10106.5°110.9°
C3DC4DH12110.2°110.7°
O3DC3DC2D124.2°110.9°
O3DC3DH10107.4°110.8°
C3DO3DH25109.5°114.0°
O2APAO1A123.7°109.5°
O2APAO3A103.6°109.5°
O1APAO3A107.5°109.4°
PAO1AH20109.5°114.0°
PAO3APB130.7°134.0°
O4DC1DO1D122.1°110.0°
O4DC1DC2D97.4°107.3°
O4DC1DH6108.2°109.9°
C3DC2DC1D101.6°104.2°
C3DC2DO2D123.3°110.5°
C3DC2DH8104.2°110.6°
C2DC3DH10106.2°110.9°
O5DPBO3A107.6°109.4°
O5DPBO1B103.7°109.5°
O3APBO1B101.4°109.5°
PBO1BH21109.5°114.1°
C1DO1DC1114.2°114.0°
O1DC1DC2D112.7°109.9°
O1DC1DH6108.0°109.9°
O1DC1H1109.5°109.5°
O1DC1H2109.5°109.5°
O1DC1H3109.5°109.4°
C1DC2DO2D115.8°110.5°
C2DC1DH6107.3°109.9°
C1DC2DH8104.5°110.5°
O2DC2DH8105.6°110.4°
C2DO2DH23109.5°114.0°
H1C1H2109.5°109.5°
H1C1H3109.5°109.5°
H2C1H3109.5°109.5°
H13C5'H14109.5°109.4°
H15C5DH16109.5°109.4°
H18N6H19109.5°120.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C2N1C6N6179.7°179.8°
N1C2N3H4180.0°179.7°
C2N1C6C50.2°0.6°
N1C2N3C40.3°0.3°
N1C6N6C5179.9°179.2°
C6N1C2N30.2°0.0°
N1C6C5C40.3°0.8°
N1C6C5N7179.9°179.8°
C6N1C2H4179.8°179.7°
N1C6N6H180.0°179.1°
N1C6N6H19120.0°0.8°
N6C6C5C4179.6°180.0°
N6C6C5N70.1°0.6°
C6N6H18H19120.0°179.9°
C2N3C4C50.4°0.0°
C2N3C4N9179.6°180.0°
C6C5C4N30.4°0.5°
C6C5C4N7179.7°179.5°
C6C5C4N9179.7°179.5°
C6C5N7C8179.8°179.4°
C5C6N6H18179.9°0.1°
C5C6N6H1959.9°179.9°
N3C4C5N9179.3°180.0°
N3C4C5N7179.8°180.0°
N3C4N9C8179.6°180.0°
N3C4N9C1'0.5°0.1°
C4N3C2H4179.7°180.0°
C4C5N7C80.5°0.0°
C5C4N9C80.3°0.1°
C5C4N9C1'179.8°180.0°
N7C5C4N90.5°0.0°
C5N7C8N90.3°0.0°
C5N7C8H17179.7°179.9°
C4N9C8N70.0°0.0°
C4N9C8C1'179.9°179.9°
C4N9C1'O4'176.7°156.5°
C4N9C1'C2'58.3°88.1°
C4N9C1'H562.9°34.2°
C4N9C8H17180.0°180.0°
N7C8N9H17180.0°179.9°
N7C8N9C1'179.9°179.9°
C8N9C1'O4'3.4°23.6°
C8N9C1'C2'121.8°91.8°
C8N9C1'H5116.9°145.9°
N9C1'O4'C2'122.4°118.9°
N9C1'O4'H5119.8°122.3°
N9C1'C2'H5121.7°122.3°
N9C1'O4'C4'132.2°159.4°
N9C1'C2'O2'138.1°98.5°
N9C1'C2'C3'101.3°142.9°
N9C1'C2'H715.3°24.2°
C1'N9C8H170.1°0.1°
O4'C1'C2'H5118.9°118.8°
O4'C1'C2'O2'102.5°142.6°
O4'C1'C2'C3'18.1°24.0°
C1'O4'C4'C3'33.8°40.5°
C1'O4'C4'C5'160.7°159.3°
O4'C1'C2'H7134.7°94.6°
C1'O4'C4'H1181.5°78.4°
C2'C1'O4'C4'9.8°40.5°
C1'C2'O2'C3'115.3°114.6°
C1'C2'O2'H7121.7°122.7°
C1'C2'C3'H7116.5°118.6°
C1'C2'C3'C4'36.1°0.0°
C1'C2'C3'O3'157.6°118.7°
C1'C2'C3'H978.5°118.8°
C1'C2'O2'H22180.0°180.0°
O4'C4'C3'C2'42.9°24.0°
O4'C4'C3'C5'119.9°118.8°
O4'C4'C3'H11116.1°118.9°
O4'C4'C5'H11118.3°122.4°
O4'C4'C3'O3'161.7°142.7°
O4'C4'C5'O5'65.5°69.6°
C4'O4'C1'H5108.0°78.3°
O4'C4'C3'H971.9°94.7°
O4'C4'C5'H1354.7°170.3°
O4'C4'C5'H14174.3°50.4°
O2'C2'C3'H7124.0°122.7°
O2'C2'C3'C4'83.4°118.6°
O2'C2'C3'O3'38.1°0.0°
O2'C2'C1'H516.4°23.8°
O2'C2'C3'H9161.9°122.6°
C2'C3'C4'O3'118.8°118.7°
C2'C3'C4'H9114.8°118.7°
C2'C3'C4'C5'162.8°142.8°
C2'C3'O3'H9123.0°122.6°
C3'C2'C1'H5137.0°94.8°
C2'C3'C4'H1173.2°95.0°
C3'C2'O2'H2264.7°65.4°
C2'C3'O3'H24180.0°61.4°
C3'C4'C5'H11123.8°122.3°
C4'C3'O3'H9125.6°122.7°
C3'C4'C5'O5'52.4°175.0°
C4'C3'C2'H7152.6°118.6°
C3'C4'C5'H13172.6°55.0°
C3'C4'C5'H1467.9°65.0°
C4'C3'O3'H2468.6°176.1°
C5'C4'C3'O3'78.4°98.5°
C4'C5'O5'H13120.2°120.0°
C4'C5'O5'H14120.2°120.0°
C4'C5'O5'PA130.1°180.0°
C5'C4'C3'H948.0°24.1°
C4'C5'H13H14119.3°120.0°
O3'C3'C2'H785.9°122.7°
O3'C3'C4'H1145.6°23.7°
C5'O5'PAO2A168.5°55.1°
C5'O5'PAO1A60.2°65.0°
C5'O5'PAO3A57.3°175.1°
O5'C5'C4'H11176.2°52.8°
O5'C5'H13H14119.3°120.0°
O5'PAO2AO1A119.9°120.1°
O5'PAO2AO3A117.8°119.9°
O5'PAO1AO3A121.0°119.9°
O5'PAO3APB59.2°160.0°
PAO5'C5'H13109.7°60.0°
PAO5'C5'H149.9°60.0°
O5'PAO1AH20118.5°59.9°
C4DC5DO5DH15120.5°120.0°
C4DC5DO5DH16120.5°119.9°
C5DC4DO4DC3D120.9°118.5°
C5DC4DO4DH12119.5°122.9°
C5DC4DC3DH12125.6°123.0°
C5DC4DC3DO3D120.9°86.2°
C5DC4DO4DC1D144.5°158.6°
C5DC4DC3DC2D106.0°155.5°
C4DC5DO5DPB166.4°180.0°
C5DC4DC3DH105.3°37.3°
C4DC5DH15H16118.4°119.9°
C5DO5DPBO2B28.2°55.0°
O5DC5DC4DO4D64.8°66.4°
O5DC5DC4DC3D49.4°179.5°
C5DO5DPBO3A87.1°175.0°
C5DO5DPBO1B166.0°65.0°
O5DC5DC4DH12174.9°56.5°
O5DC5DH15H16118.4°120.1°
O2BPBO3APA18.3°45.0°
O2BPBO5DO3A115.3°120.0°
O2BPBO5DO1B137.8°120.0°
O2BPBO3AO1B138.2°120.1°
O2BPBO1BH210.0°180.0°
O4DC4DC3DH12120.7°118.6°
O4DC4DC3DO3D125.4°155.3°
O4DC4DC3DC2D7.7°37.1°
C4DO4DC1DO1D78.2°93.0°
C4DO4DC1DC2D44.6°26.6°
C4DO4DC1DH6155.7°145.9°
O4DC4DC3DH10119.0°81.2°
O4DC4DC5DH1555.8°173.5°
O4DC4DC5DH16174.7°53.6°
C4DC3DO3DC2D120.5°112.7°
C4DC3DO3DH10115.1°123.6°
C3DC4DO4DC1D23.6°40.1°
C4DC3DC2DH10111.5°118.2°
C4DC3DC2DC1D34.0°20.9°
C4DC3DC2DO2D165.7°97.8°
C4DC3DC2DH874.4°139.6°
C3DC4DC5DH15170.0°59.4°
C3DC4DC5DH1671.1°60.5°
C4DC3DO3DH25180.0°174.1°
O3DC3DC2DH10125.0°123.6°
O3DC3DC2DC1D89.5°139.1°
O3DC3DC2DO2D42.2°20.4°
O3DC3DC2DH8162.1°102.2°
O3DC3DC4DH124.7°36.7°
O2APAO1AO3A120.4°120.0°
O2APAO3APB51.7°40.0°
O2APAO1AH200.0°179.9°
O1APAO3APB175.9°80.0°
PAO3APBO5D131.5°165.0°
PAO3APBO1B119.9°75.0°
O3APAO1AH20120.5°60.0°
O4DC1DC2DC3D46.4°2.0°
O4DC1DO1DC2D115.4°117.9°
O4DC1DO1DH6126.2°121.1°
O4DC1DO1DC1133.8°72.1°
O4DC1DC2DH6111.7°119.4°
O4DC1DC2DO2D177.5°120.8°
O4DC1DC2DH861.8°116.7°
C1DO4DC4DH1296.0°78.4°
C3DC2DC1DO1D83.1°117.6°
C3DC2DC1DO2D136.1°118.7°
C3DC2DC1DH8108.2°118.8°
C3DC2DO2DH8119.3°122.7°
C3DC2DC1DH6158.1°121.4°
C2DC3DC4DH12128.4°81.5°
C3DC2DO2DH23180.0°176.2°
C2DC3DO3DH2559.5°61.4°
O5DPBO3AO1B108.6°120.0°
PBO5DC5DH1545.9°60.0°
PBO5DC5DH1673.1°60.0°
O5DPBO1BH21123.2°59.9°
O3APBO1BH21125.3°60.0°
O1DC1DC2DH6118.8°121.0°
O1DC1DC2DO2D53.0°1.2°
C1DO1DC1H1180.0°60.0°
C1DO1DC1H260.0°60.0°
C1DO1DC1H360.0°180.0°
O1DC1DC2DH8168.7°123.6°
C1O1DC1DC2D110.9°170.0°
O1DC1H1H2120.0°120.0°
O1DC1H1H3120.0°120.0°
O1DC1H2H3120.0°120.0°
C1O1DC1DH67.6°49.0°
C1DC2DO2DH8115.1°122.5°
C1DC2DC3DH10145.5°97.3°
C1DC2DO2DH2354.4°61.4°
O2DC2DC1DH665.8°119.9°
O2DC2DC3DH1082.8°144.0°
H1C1H2H3120.0°120.0°
H5C1'C2'H7106.4°146.5°
H6C1DC2DH849.9°2.6°
H7C2'C3'H938.0°0.2°
H7C2'O2'H2258.3°57.3°
H8C2DC3DH1037.1°21.4°
H8C2DO2DH2360.7°61.1°
H9C3'C4'H11172.0°146.3°
H9C3'O3'H2457.0°61.2°
H10C3DC4DH12120.4°160.3°
H10C3DO3DH2564.9°62.3°
H11C4'C5'H1363.6°67.3°
H11C4'C5'H1455.9°172.8°
H12C4DC5DH1564.6°63.6°
H12C4DC5DH1654.3°176.5°

222036

PDB entries from 2024-07-03

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