RUS
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
O1P | P | doub | 1.48Å | 1.49Å | |
O2P | P | sing | 1.61Å | 1.49Å | |
P | O5' | sing | 1.61Å | 1.60Å | |
P | O3P | sing | 1.61Å | 1.60Å | |
C6 | N1 | sing | 1.36Å | 1.39Å | |
C1' | N1 | sing | 1.46Å | 1.51Å | |
N1 | C2 | sing | 1.35Å | 1.39Å | |
C2 | N3 | doub | 1.31Å | 1.38Å | |
C2 | SE2 | sing | 1.96Å | 1.74Å | |
C4 | N3 | sing | 1.34Å | 1.38Å | |
C5 | C4 | sing | 1.42Å | 1.44Å | |
C4 | O4 | doub | 1.22Å | 1.23Å | |
C6 | C5 | doub | 1.35Å | 1.34Å | |
C5 | H5 | sing | 1.08Å | 1.08Å | |
C6 | H6 | sing | 1.08Å | 1.08Å | |
C2' | C1' | sing | 1.55Å | 1.52Å | |
C1' | O4' | sing | 1.44Å | 1.42Å | |
C1' | H1' | sing | 1.09Å | 1.10Å | |
C3' | C2' | sing | 1.54Å | 1.53Å | |
C2' | O2' | sing | 1.43Å | 1.42Å | |
C2' | H2' | sing | 1.09Å | 1.10Å | |
O2' | HO2' | sing | 0.97Å | 0.95Å | |
O2P | HO2P | sing | 0.97Å | 0.95Å | |
O3' | C3' | sing | 1.43Å | 1.43Å | |
C3' | C4' | sing | 1.54Å | 1.52Å | |
C3' | H3' | sing | 1.09Å | 1.10Å | |
O3' | HO3' | sing | 0.97Å | 0.95Å | |
O3P | HO3P | sing | 0.97Å | 0.95Å | |
C5' | C4' | sing | 1.53Å | 1.52Å | |
C4' | O4' | sing | 1.44Å | 1.45Å | |
C4' | H4' | sing | 1.09Å | 1.10Å | |
C5' | O5' | sing | 1.43Å | 1.42Å | |
C5' | H5' | sing | 1.09Å | 1.10Å | |
C5' | H5'A | sing | 1.09Å | 1.10Å | |
SE2 | HSE2 | sing | 1.56Å | 1.46Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
O1P | P | O2P | 120.8° | 109.5° |
O1P | P | O5' | 108.3° | 109.5° |
O1P | P | O3P | 106.3° | 109.5° |
O2P | P | O5' | 108.6° | 109.5° |
O2P | P | O3P | 107.6° | 109.5° |
P | O2P | HO2P | 109.5° | 114.0° |
O5' | P | O3P | 104.0° | 109.4° |
P | O5' | C5' | 119.9° | 123.0° |
P | O3P | HO3P | 109.5° | 114.0° |
C6 | N1 | C1' | 120.6° | 119.7° |
C6 | N1 | C2 | 120.9° | 120.6° |
N1 | C6 | C5 | 123.5° | 119.2° |
N1 | C6 | H6 | 118.3° | 120.3° |
C1' | N1 | C2 | 118.6° | 119.7° |
N1 | C1' | C2' | 113.7° | 110.4° |
N1 | C1' | O4' | 111.8° | 110.3° |
N1 | C1' | H1' | 103.9° | 110.4° |
N1 | C2 | N3 | 114.1° | 121.6° |
N1 | C2 | SE2 | 124.2° | 119.2° |
N3 | C2 | SE2 | 121.7° | 119.2° |
C2 | N3 | C4 | 127.8° | 120.7° |
C2 | SE2 | HSE2 | 109.5° | 101.0° |
N3 | C4 | C5 | 115.0° | 119.3° |
N3 | C4 | O4 | 119.6° | 120.4° |
C5 | C4 | O4 | 125.5° | 120.3° |
C4 | C5 | C6 | 118.8° | 118.6° |
C4 | C5 | H5 | 120.6° | 120.7° |
C6 | C5 | H5 | 120.6° | 120.7° |
C5 | C6 | H6 | 118.3° | 120.4° |
C2' | C1' | O4' | 106.4° | 104.8° |
C2' | C1' | H1' | 109.6° | 110.5° |
C1' | C2' | C3' | 100.6° | 104.0° |
C1' | C2' | O2' | 109.8° | 110.4° |
C1' | C2' | H2' | 117.0° | 110.5° |
O4' | C1' | H1' | 111.5° | 110.4° |
C1' | O4' | C4' | 109.4° | 105.3° |
C3' | C2' | O2' | 115.2° | 110.6° |
C3' | C2' | H2' | 111.9° | 110.7° |
C2' | C3' | O3' | 114.1° | 110.5° |
C2' | C3' | C4' | 100.3° | 104.1° |
C2' | C3' | H3' | 113.6° | 110.5° |
O2' | C2' | H2' | 103.0° | 110.5° |
C2' | O2' | HO2' | 109.5° | 113.9° |
O3' | C3' | C4' | 112.4° | 110.5° |
O3' | C3' | H3' | 101.8° | 110.5° |
C3' | O3' | HO3' | 109.5° | 114.0° |
C4' | C3' | H3' | 115.2° | 110.5° |
C3' | C4' | C5' | 114.9° | 110.4° |
C3' | C4' | O4' | 103.5° | 104.8° |
C3' | C4' | H4' | 110.0° | 110.4° |
C5' | C4' | O4' | 109.6° | 110.4° |
C5' | C4' | H4' | 104.0° | 110.5° |
C4' | C5' | O5' | 111.7° | 109.4° |
C4' | C5' | H5' | 108.7° | 109.5° |
C4' | C5' | H5'A | 108.7° | 109.5° |
O4' | C4' | H4' | 115.2° | 110.4° |
O5' | C5' | H5' | 108.7° | 109.5° |
O5' | C5' | H5'A | 108.7° | 109.5° |
H5' | C5' | H5'A | 110.2° | 109.5° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
O1P | P | O2P | O5' | 125.8° | 120.0° |
O1P | P | O2P | O3P | 122.2° | 120.0° |
O1P | P | O5' | O3P | 112.8° | 120.0° |
O1P | P | O2P | HO2P | 0.0° | 179.9° |
O1P | P | O3P | HO3P | 0.0° | 60.0° |
O1P | P | O5' | C5' | 38.1° | 55.0° |
O2P | P | O5' | O3P | 114.4° | 120.0° |
O2P | P | O3P | HO3P | 130.7° | 60.0° |
O2P | P | O5' | C5' | 170.9° | 65.0° |
O5' | P | O2P | HO2P | 125.9° | 60.1° |
O5' | P | O3P | HO3P | 114.2° | 180.0° |
P | O5' | C5' | C4' | 170.5° | 180.0° |
P | O5' | C5' | H5' | 50.5° | 60.0° |
P | O5' | C5' | H5'A | 69.5° | 60.0° |
O3P | P | O2P | HO2P | 122.1° | 59.9° |
O3P | P | O5' | C5' | 74.8° | 175.0° |
C6 | N1 | C1' | C2 | 179.8° | 179.7° |
C6 | N1 | C2 | N3 | 0.2° | 0.0° |
C6 | N1 | C2 | SE2 | 179.5° | 180.0° |
N1 | C6 | C5 | C4 | 0.4° | 0.0° |
N1 | C6 | C5 | H6 | 180.0° | 180.0° |
N1 | C6 | C5 | H5 | 179.6° | 180.0° |
C6 | N1 | C1' | C2' | 97.6° | 117.9° |
C6 | N1 | C1' | O4' | 22.9° | 126.8° |
C6 | N1 | C1' | H1' | 143.3° | 4.5° |
C1' | N1 | C2 | N3 | 180.0° | 179.7° |
C1' | N1 | C2 | SE2 | 0.3° | 0.3° |
C1' | N1 | C6 | C5 | 179.8° | 179.7° |
C1' | N1 | C6 | H6 | 0.3° | 0.3° |
N1 | C1' | C2' | O4' | 123.5° | 118.8° |
N1 | C1' | C2' | H1' | 115.8° | 122.4° |
N1 | C1' | O4' | H1' | 115.9° | 122.3° |
N1 | C1' | C2' | C3' | 92.8° | 142.8° |
N1 | C1' | C2' | O2' | 145.4° | 98.5° |
N1 | C1' | C2' | H2' | 28.6° | 24.0° |
N1 | C1' | O4' | C4' | 118.9° | 159.4° |
N1 | C2 | N3 | SE2 | 179.8° | 180.0° |
N1 | C2 | N3 | C4 | 0.0° | 0.0° |
C2 | N1 | C6 | C5 | 0.4° | 0.0° |
C2 | N1 | C6 | H6 | 179.5° | 180.0° |
C2 | N1 | C1' | C2' | 82.2° | 61.8° |
C2 | N1 | C1' | O4' | 157.3° | 53.5° |
C2 | N1 | C1' | H1' | 36.9° | 175.8° |
N1 | C2 | SE2 | HSE2 | 179.7° | 180.0° |
C2 | N3 | C4 | C5 | 0.0° | 0.0° |
C2 | N3 | C4 | O4 | 179.9° | 180.0° |
N3 | C2 | SE2 | HSE2 | 0.0° | 0.0° |
SE2 | C2 | N3 | C4 | 179.7° | 180.0° |
N3 | C4 | C5 | O4 | 180.0° | 180.0° |
N3 | C4 | C5 | C6 | 0.1° | 0.0° |
N3 | C4 | C5 | H5 | 179.9° | 179.9° |
C4 | C5 | C6 | H5 | 180.0° | 180.0° |
C4 | C5 | C6 | H6 | 179.6° | 180.0° |
O4 | C4 | C5 | C6 | 179.9° | 180.0° |
O4 | C4 | C5 | H5 | 0.1° | 0.0° |
H5 | C5 | C6 | H6 | 0.4° | 0.1° |
C2' | C1' | O4' | H1' | 119.5° | 118.9° |
C1' | C2' | C3' | O2' | 117.9° | 118.6° |
C1' | C2' | C3' | H2' | 125.0° | 118.7° |
C1' | C2' | O2' | H2' | 125.3° | 122.5° |
C1' | C2' | O2' | HO2' | 180.0° | 180.0° |
C1' | C2' | C3' | O3' | 163.0° | 118.7° |
C1' | C2' | C3' | C4' | 42.6° | 0.0° |
C1' | C2' | C3' | H3' | 80.9° | 118.7° |
C2' | C1' | O4' | C4' | 5.7° | 40.5° |
O4' | C1' | C2' | C3' | 30.7° | 24.0° |
O4' | C1' | C2' | O2' | 91.1° | 142.7° |
O4' | C1' | C2' | H2' | 152.1° | 94.8° |
C1' | O4' | C4' | C3' | 22.1° | 40.5° |
C1' | O4' | C4' | C5' | 145.1° | 159.3° |
C1' | O4' | C4' | H4' | 98.1° | 78.3° |
H1' | C1' | C2' | C3' | 151.5° | 94.9° |
H1' | C1' | C2' | O2' | 29.7° | 23.8° |
H1' | C1' | C2' | H2' | 87.2° | 146.4° |
H1' | C1' | O4' | C4' | 125.2° | 78.4° |
C3' | C2' | O2' | H2' | 122.0° | 122.9° |
C3' | C2' | O2' | HO2' | 67.4° | 65.3° |
C2' | C3' | O3' | C4' | 113.3° | 114.7° |
C2' | C3' | O3' | H3' | 122.8° | 122.7° |
C2' | C3' | C4' | H3' | 122.4° | 118.7° |
C2' | C3' | O3' | HO3' | 180.0° | 61.4° |
C2' | C3' | C4' | C5' | 159.8° | 142.8° |
C2' | C3' | C4' | O4' | 40.3° | 24.0° |
C2' | C3' | C4' | H4' | 83.3° | 94.8° |
O2' | C2' | C3' | O3' | 45.1° | 0.1° |
O2' | C2' | C3' | C4' | 75.3° | 118.6° |
O2' | C2' | C3' | H3' | 161.2° | 122.7° |
H2' | C2' | O2' | HO2' | 54.7° | 57.5° |
H2' | C2' | C3' | O3' | 72.0° | 122.7° |
H2' | C2' | C3' | C4' | 167.6° | 118.6° |
H2' | C2' | C3' | H3' | 44.1° | 0.0° |
O3' | C3' | C4' | H3' | 116.0° | 122.6° |
O3' | C3' | C4' | C5' | 78.6° | 98.5° |
O3' | C3' | C4' | O4' | 161.9° | 142.7° |
O3' | C3' | C4' | H4' | 38.3° | 23.8° |
C4' | C3' | O3' | HO3' | 66.7° | 176.1° |
C3' | C4' | C5' | O4' | 116.0° | 115.3° |
C3' | C4' | C5' | H4' | 120.3° | 122.3° |
C3' | C4' | O4' | H4' | 120.2° | 118.8° |
C3' | C4' | C5' | O5' | 61.9° | 175.0° |
C3' | C4' | C5' | H5' | 178.1° | 55.0° |
C3' | C4' | C5' | H5'A | 58.1° | 65.0° |
H3' | C3' | O3' | HO3' | 57.2° | 61.3° |
H3' | C3' | C4' | C5' | 37.4° | 24.1° |
H3' | C3' | C4' | O4' | 82.1° | 94.7° |
H3' | C3' | C4' | H4' | 154.3° | 146.5° |
C5' | C4' | O4' | H4' | 116.8° | 122.4° |
C4' | C5' | O5' | H5' | 120.0° | 120.0° |
C4' | C5' | O5' | H5'A | 120.0° | 120.0° |
C4' | C5' | H5' | H5'A | 119.1° | 120.0° |
O4' | C4' | C5' | O5' | 54.1° | 69.7° |
O4' | C4' | C5' | H5' | 65.9° | 170.4° |
O4' | C4' | C5' | H5'A | 174.1° | 50.4° |
H4' | C4' | C5' | O5' | 177.8° | 52.7° |
H4' | C4' | C5' | H5' | 57.8° | 67.3° |
H4' | C4' | C5' | H5'A | 62.2° | 172.7° |
O5' | C5' | H5' | H5'A | 119.1° | 120.0° |