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SummaryGeometryPCM/PTMRelated PDB entries

RUD

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
RUP1sing2.34Å2.38Å
RUCL1sing2.41Å2.17Å
RUCL2sing2.41Å2.14Å
C18C17sing1.51Å1.53Å
C18C19sing1.39Å1.51ÅAromatic
C18C23doub1.38Å1.49ÅAromatic
C19C20doub1.39Å1.51ÅAromatic
C20C21sing1.39Å1.50ÅAromatic
C22C23sing1.39Å1.50ÅAromatic
C22C21doub1.39Å1.51ÅAromatic
C21C24sing1.52Å1.55Å
C24C25sing1.52Å1.54Å
C25C26sing1.50Å1.50Å
C26O1doub1.22Å1.22Å
C26O2sing1.31Å1.33Å
P1C4sing1.87Å1.83Å
P1C5sing1.87Å1.82Å
P1C3sing1.87Å1.82Å
C4N2sing1.48Å1.47Å
C5N3sing1.48Å1.48Å
N3C7sing1.48Å1.49Å
N3C8sing1.48Å1.48Å
C7N2sing1.48Å1.48Å
N2C6sing1.48Å1.47Å
C6N1sing1.48Å1.49Å
C8N1sing1.48Å1.48Å
N1C3sing1.48Å1.48Å
C17H1sing0.97Å1.10Å
C17H2sing0.97Å1.10Å
C17H3sing0.97Å1.10Å
C24H8sing0.98Å1.10Å
C24H9sing0.98Å1.10Å
C25H10sing0.96Å1.10Å
C25H11sing0.97Å1.10Å
C4H12sing0.99Å1.10Å
C4H13sing0.99Å1.10Å
C5H14sing0.99Å1.10Å
C5H15sing0.99Å1.10Å
C7H17sing0.99Å1.10Å
C7H18sing0.99Å1.10Å
C6H20sing0.99Å1.10Å
C6H21sing0.99Å1.10Å
C8H22sing0.99Å1.10Å
C8H23sing0.99Å1.10Å
C3H25sing0.99Å1.10Å
C3H26sing0.99Å1.10Å
O2H27sing0.88Å0.95Å
C19H4sing0.94Å1.08Å
C20H5sing0.94Å1.08Å
C22H6sing0.94Å1.08Å
C23H7sing0.94Å1.08Å
RUC18sing2.20Å2.24Å
RUC19sing2.21Å2.26Å
RUC20sing2.24Å2.19Å
RUC21sing2.23Å2.23Å
RUC22sing2.19Å2.27Å
RUC23sing2.17Å2.28Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
P1RUCL1100.0°88.8°
P1RUCL265.8°87.9°
RUP1C4117.7°121.6°
RUP1C5116.1°115.7°
RUP1C3115.1°124.2°
P1RUC18136.4°124.1°
P1RUC1999.3°160.4°
P1RUC2081.7°149.1°
P1RUC2197.0°113.2°
P1RUC22132.1°91.1°
P1RUC23165.4°95.7°
CL1RUCL293.3°81.5°
CL1RUC18113.7°145.1°
CL1RUC19149.1°110.7°
CL1RUC20168.7°92.0°
CL1RUC21129.2°99.3°
CL1RUC2299.5°129.8°
CL1RUC2393.4°166.0°
CL2RUC1884.8°88.1°
CL2RUC1973.2°93.8°
CL2RUC2097.6°122.7°
CL2RUC21137.1°158.8°
CL2RUC22154.7°148.7°
CL2RUC23119.5°111.9°
C17C18C19120.8°121.5°
C17C18C23116.1°120.7°
C18C17H1109.5°109.5°
C18C17H2109.5°110.1°
C18C17H3109.5°109.7°
C17C18RU130.8°128.7°
C19C18C23123.2°117.8°
C18C19C20116.3°121.3°
C18C19H4121.8°119.3°
C19C18RU71.3°72.2°
C18C19RU69.6°71.1°
C18C23C22119.6°121.2°
C18C23H7120.2°119.3°
C23C18RU72.4°70.5°
C18C23RU69.0°72.6°
C19C20C21121.3°121.0°
C20C19H4121.9°119.4°
C19C20H5119.3°119.6°
C20C19RU67.9°72.9°
C19C20RU72.6°70.8°
C20C21C22120.8°117.4°
C20C21C24116.4°121.6°
C21C20H5119.4°119.3°
C21C20RU71.6°71.7°
C20C21RU68.7°72.0°
C23C22C21118.7°121.2°
C23C22H6120.7°119.5°
C22C23H7120.2°119.5°
C23C22RU71.1°70.7°
C22C23RU70.5°72.2°
C22C21C24122.6°120.8°
C21C22H6120.7°119.3°
C22C21RU71.9°69.9°
C21C22RU69.1°73.4°
C21C24C25116.5°118.1°
C21C24H8107.7°108.2°
C21C24H9107.7°108.3°
C24C21RU129.4°132.5°
C24C25C26106.4°115.0°
C25C24H8107.7°108.0°
C25C24H9107.7°108.2°
C24C25H10110.2°108.9°
C24C25H11110.2°108.8°
C25C26O1117.9°123.3°
C25C26O2118.5°113.5°
C26C25H10110.2°108.2°
C26C25H11110.2°108.4°
O1C26O2123.2°123.3°
C26O2H27109.5°112.1°
C4P1C598.5°96.5°
C4P1C3105.9°96.5°
P1C4N2108.5°113.7°
P1C4H12109.7°108.3°
P1C4H13109.7°108.3°
C5P1C3101.0°96.3°
P1C5N3109.6°113.9°
P1C5H14109.4°108.2°
P1C5H15109.4°108.4°
P1C3N1106.5°113.7°
P1C3H25110.2°108.3°
P1C3H26110.2°108.4°
C4N2C7111.5°111.3°
C4N2C6110.7°111.2°
N2C4H12109.7°109.2°
N2C4H13109.7°109.2°
C5N3C7111.0°111.2°
C5N3C8110.1°111.2°
N3C5H14109.4°109.0°
N3C5H15109.4°109.2°
C7N3C8112.2°108.7°
N3C7N2111.7°113.6°
N3C7H17108.9°109.3°
N3C7H18108.9°109.1°
N3C8N1111.5°113.6°
N3C8H22109.0°109.2°
N3C8H23109.0°109.4°
C7N2C6109.3°108.5°
N2C7H17108.9°109.3°
N2C7H18108.9°109.2°
N2C6N1115.3°113.6°
N2C6H20108.0°109.4°
N2C6H21108.0°109.2°
C6N1C8110.1°108.5°
C6N1C3112.0°111.3°
N1C6H20108.0°109.4°
N1C6H21108.0°109.2°
C8N1C3111.5°111.4°
N1C8H22109.0°109.2°
N1C8H23109.0°109.3°
N1C3H25110.2°109.2°
N1C3H26110.2°109.2°
H1C17H2109.5°109.3°
H1C17H3109.4°109.0°
H2C17H3109.5°109.4°
H8C24H9109.5°105.4°
H10C25H11109.5°107.3°
H12C4H13109.5°108.0°
H14C5H15109.5°108.0°
H17C7H18109.5°105.8°
H20C6H21109.4°105.8°
H22C8H23109.5°105.8°
H25C3H26109.5°108.0°
H4C19RU133.5°128.8°
H5C20RU128.9°130.0°
H6C22RU131.9°128.7°
H7C23RU133.4°127.2°
C18RUC1939.2°36.7°
C18RUC2070.7°66.0°
C18RUC2182.9°79.2°
C18RUC2270.0°66.7°
C18RUC2338.6°36.9°
C19RUC2039.5°36.3°
C19RUC2171.5°66.0°
C19RUC2284.9°77.3°
C19RUC2371.1°65.6°
C20RUC2139.7°36.3°
C20RUC2271.7°65.1°
C20RUC2384.0°77.3°
C21RUC2239.0°36.7°
C21RUC2369.8°66.7°
C22RUC2338.4°37.1°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
P1RUCL1CL266.0°88.1°
P1RUCL1C18151.8°162.2°
P1RUCL1C19128.0°179.0°
P1RUCL1C2097.9°149.1°
P1RUCL1C21107.7°113.3°
P1RUCL1C22136.0°90.4°
P1RUCL1C23174.2°109.2°
P1RUCL2C18147.0°124.2°
P1RUCL2C19108.8°160.5°
P1RUCL2C2077.3°176.0°
P1RUCL2C2173.2°177.1°
P1RUCL2C22140.0°88.7°
P1RUCL2C23164.7°95.3°
P1RUC18C1791.4°68.7°
P1RUC18C1923.4°174.8°
P1RUC18C23159.0°45.5°
P1RUC19C2064.6°119.9°
P1RUC20C21111.6°12.0°
P1RUC22C23163.7°98.0°
P1RUC22C2131.3°129.3°
P1RUC21C2439.4°56.6°
RUP1C4C5125.5°125.7°
RUP1C4C3130.4°137.2°
RUP1C5C3125.2°132.9°
RUP1C4N2179.2°174.0°
RUP1C5N3178.4°178.3°
RUP1C3N1179.4°175.7°
RUP1C4H1259.3°64.3°
RUP1C4H1361.0°52.5°
RUP1C5H1461.6°56.9°
RUP1C5H1558.4°59.9°
RUP1C3H2559.9°54.2°
RUP1C3H2661.0°62.7°
P1RUC19H448.9°125.8°
P1RUC20H51.7°101.4°
P1RUC22H681.7°14.8°
P1RUC23H7169.4°29.7°
P1RUC18C2053.8°146.4°
P1RUC18C2192.7°110.8°
P1RUC18C22130.7°74.6°
P1RUC19C2194.3°91.9°
P1RUC19C22131.8°55.0°
P1RUC19C23168.6°17.7°
P1RUC20C22139.6°42.6°
P1RUC20C23176.9°79.7°
P1RUC21C23173.6°86.2°
CL1RUCL2C18113.5°146.6°
CL1RUCL2C19151.7°110.4°
CL1RUCL2C20176.8°86.9°
CL1RUCL2C21172.7°93.8°
CL1RUCL2C22120.4°177.8°
CL1RUCL2C2395.8°175.5°
CL1RUC18C1746.0°89.7°
CL1RUC18C19160.9°26.9°
CL1RUC18C2363.5°156.2°
CL1RUC19C20167.2°63.2°
CL1RUC20C2111.9°103.1°
CL1RUC22C2383.4°172.5°
CL1RUC22C21144.2°39.9°
CL1RUC21C2469.6°36.1°
CL1RUP1C4147.0°33.7°
CL1RUP1C596.7°82.6°
CL1RUP1C321.0°159.0°
CL1RUC19H479.2°51.1°
CL1RUC20H5101.4°10.3°
CL1RUC22H631.2°74.6°
CL1RUC23H712.5°138.2°
CL1RUC18C20168.7°55.2°
CL1RUC18C21129.8°90.8°
CL1RUC18C2291.8°127.1°
CL1RUC19C21137.5°91.2°
CL1RUC19C22100.0°128.1°
CL1RUC19C2363.2°165.3°
CL1RUC20C2239.9°133.7°
CL1RUC20C2377.2°170.8°
CL1RUC21C2377.4°178.9°
CL2RUC18C1745.3°17.5°
CL2RUC18C1969.6°99.0°
CL2RUC18C23154.8°131.7°
CL2RUC19C20125.7°145.5°
CL2RUC20C21175.6°175.8°
CL2RUC22C2335.8°10.2°
CL2RUC22C2196.6°142.8°
CL2RUC21C24101.0°126.5°
CL2RUP1C457.9°47.8°
CL2RUP1C5174.2°164.1°
CL2RUP1C368.1°77.5°
CL2RUC19H412.1°31.2°
CL2RUC20H562.3°70.9°
CL2RUC22H6150.4°102.6°
CL2RUC23H783.2°60.3°
CL2RUC18C2099.9°127.3°
CL2RUC18C21138.9°163.0°
CL2RUC18C22176.8°160.8°
CL2RUC19C21155.4°173.5°
CL2RUC19C22167.1°149.6°
CL2RUC19C23130.3°112.4°
CL2RUC20C22156.4°145.2°
CL2RUC20C23119.0°108.0°
CL2RUC21C23112.0°90.7°
C17C18C19C23179.8°179.4°
C17C18C19RU127.0°125.1°
C17C18C23RU127.5°124.2°
C17C18C19C20177.7°179.9°
C17C18C23C22178.5°179.8°
C18C17H1H2120.0°120.6°
C18C17H1H3120.0°120.0°
C18C17H2H3120.0°120.6°
C17C18C19H42.3°0.5°
C17C18C23H71.5°0.8°
C17C18RUC20145.2°144.9°
C17C18RUC21175.8°179.5°
C17C18RUC22137.9°143.2°
C19C18C23RU52.3°56.4°
C18C19C20H4180.0°179.7°
C18C19C20RU51.6°54.3°
C18C19C20C213.1°0.9°
C19C18C23C221.3°0.8°
C19C18C17H189.9°124.3°
C19C18C17H2150.1°4.2°
C19C18C17H330.1°116.2°
C18C19H4RU91.3°88.5°
C18C19C20H5176.9°180.0°
C19C18C23H7178.7°179.8°
C19C18RUC2169.3°64.0°
C19C18RUC22107.3°100.2°
C23C18C19C202.1°0.4°
C18C23C22H7180.0°179.0°
C18C23C22RU50.4°55.8°
C18C23C22C211.5°0.3°
C23C18C17H189.9°55.1°
C23C18C17H230.1°175.2°
C23C18C17H3150.1°64.4°
C23C18C19H4177.9°179.9°
C18C23C22H6178.5°179.9°
C18C23H7RU88.9°89.7°
C23C18RUC20105.2°101.0°
C23C18RUC2166.3°65.3°
C19C20C21H5180.0°179.1°
C19C20C21RU55.1°53.0°
C19C20C21C223.5°1.9°
C19C20C21C24179.7°177.7°
C20C19H4RU88.8°91.1°
C19C20H5RU90.7°89.1°
C20C19RUC2267.2°64.9°
C20C19RUC23104.0°102.1°
C20C21C22C232.6°1.6°
C20C21C22C24175.9°175.8°
C20C21C22RU50.2°55.9°
C20C21C24RU83.3°94.1°
C20C21C24C25168.0°83.9°
C20C21C24H871.0°39.0°
C20C21C24H947.0°152.8°
C21C20C19H4176.9°178.7°
C21C20H5RU89.3°90.0°
C20C21C22H6177.4°178.5°
C21C20RUC18102.6°105.0°
C21C20RUC2365.3°67.8°
C23C22C21H6180.0°179.8°
C23C22C21RU52.8°54.3°
C23C22C21C24178.5°177.4°
C23C22H6RU91.4°88.1°
C22C23H7RU91.0°89.3°
C23C22RUC1965.7°66.0°
C23C22RUC20103.9°102.3°
C22C21C24RU92.7°90.3°
C22C21C24C2515.9°100.5°
C22C21C24H8105.1°136.5°
C22C21C24H9136.9°22.8°
C22C21C20H5176.5°178.9°
C21C22H6RU88.5°91.7°
C21C22C23H7178.5°178.7°
C21C22RUC18103.9°103.6°
C21C22RUC1966.6°66.6°
C21C24C25H8121.0°123.0°
C21C24C25H9121.0°123.4°
C21C24C25C2649.6°152.8°
C21C24H8H9116.8°115.6°
C21C24C25H1069.9°31.2°
C21C24C25H11169.2°85.4°
C24C21C20H50.3°3.2°
C24C21C22H61.5°2.8°
C24C21RUC18175.5°179.3°
C24C21RUC19136.9°144.7°
C24C21RUC23147.0°142.8°
C24C25C26H10119.5°121.9°
C24C25C26H11119.5°122.0°
C24C25C26O133.9°97.3°
C24C25C26O2139.0°82.8°
C25C24H8H9116.8°115.4°
C24C25H10H11121.4°117.6°
C25C24C21RU108.7°10.2°
C25C26O1O2172.5°180.0°
C26C25C24H8170.7°84.1°
C26C25C24H971.4°29.4°
C26C25H10H11121.4°116.8°
C25C26O2H27172.5°180.0°
O1C26C25H10153.4°24.6°
O1C26C25H1185.6°140.7°
O1C26O2H270.0°0.0°
O2C26C25H1019.4°155.3°
O2C26C25H11101.5°39.3°
C4P1C5C3108.2°97.3°
P1C4N2H12119.9°121.1°
P1C4N2H13119.9°121.0°
C4P1C5N355.0°48.5°
P1C4N2C765.0°60.5°
P1C4N2C656.9°60.7°
C4P1C3N148.7°48.7°
P1C4H12H13120.5°117.1°
C4P1C5H1465.1°72.9°
C4P1C5H15175.0°170.2°
C4P1C3H25168.2°170.2°
C4P1C3H2670.8°72.9°
C4P1RUC186.0°134.1°
C4P1RUC198.8°143.4°
C4P1RUC2044.3°125.7°
C4P1RUC2181.1°133.4°
C4P1RUC22100.3°163.6°
C4P1RUC2356.5°159.6°
C5P1C4N255.3°48.4°
P1C5N3H14120.0°120.9°
P1C5N3H15120.0°121.3°
P1C5N3C763.4°60.5°
P1C5N3C861.5°60.7°
C5P1C3N153.5°48.6°
C5P1C4H12175.1°170.0°
C5P1C4H1364.6°73.1°
P1C5H14H15119.9°117.1°
C5P1C3H2566.0°72.9°
C5P1C3H26173.0°170.2°
C5P1RUC18122.2°109.6°
C5P1RUC19107.5°100.2°
C5P1RUC2071.9°9.4°
C5P1RUC2135.2°17.0°
C5P1RUC2215.9°47.2°
C5P1RUC2359.8°84.1°
C3P1C4N248.8°48.8°
C3P1C5N353.2°48.8°
P1C3N1C658.6°60.6°
P1C3N1C865.2°60.6°
P1C3N1H25119.5°121.0°
P1C3N1H26119.5°121.1°
C3P1C4H1271.1°72.8°
C3P1C4H13168.6°170.3°
C3P1C5H14173.2°170.2°
C3P1C5H1566.8°73.0°
P1C3H25H26121.4°117.1°
C3P1RUC18120.1°8.8°
C3P1RUC19134.8°18.1°
C3P1RUC20170.4°109.0°
C3P1RUC21152.9°101.3°
C3P1RUC22133.6°71.1°
C3P1RUC23177.5°34.3°
C4N2C7N368.9°67.0°
C4N2C7C6122.7°122.7°
C4N2C6N169.2°66.9°
N2C4H12H13120.4°118.6°
C4N2C7H1751.4°55.4°
C4N2C7H18170.8°170.8°
C4N2C6H2051.6°55.7°
C4N2C6H21169.9°171.0°
C5N3C7C8123.7°122.7°
C5N3C7N267.4°66.9°
C5N3C8N169.0°66.8°
N3C5H14H15119.9°118.6°
C5N3C7H1752.9°55.6°
C5N3C7H18172.3°170.9°
C5N3C8H22170.6°171.1°
C5N3C8H2351.3°55.7°
N3C7N2H17120.3°122.5°
N3C7N2H18120.4°122.1°
N3C7N2C653.9°55.7°
C7N3C8N155.2°55.9°
C7N3C5H1456.7°60.5°
C7N3C5H15176.6°178.2°
N3C7H17H18119.0°117.5°
C7N3C8H2265.1°66.3°
C7N3C8H23175.5°178.3°
C8N3C7N256.3°55.7°
N3C8N1C652.2°56.0°
N3C8N1H22120.3°122.1°
N3C8N1H23120.3°122.5°
N3C8N1C372.8°66.8°
C8N3C5H14178.5°178.3°
C8N3C5H1558.5°60.5°
C8N3C7H17176.6°178.2°
C8N3C7H1864.0°66.4°
N3C8H22H23119.1°117.7°
C7N2C6N154.0°55.9°
C7N2C4H12175.1°178.4°
C7N2C4H1354.9°60.5°
N2C7H17H18119.0°117.6°
C7N2C6H20174.8°178.5°
C7N2C6H2166.9°66.2°
N2C6N1H20120.8°122.5°
N2C6N1H21120.9°122.1°
N2C6N1C853.4°56.0°
N2C6N1C371.3°66.8°
C6N2C4H1262.9°60.4°
C6N2C4H13176.8°178.3°
C6N2C7H17174.2°178.2°
C6N2C7H1866.5°66.4°
N2C6H20H21117.4°117.5°
C6N1C8C3124.9°122.8°
N1C6H20H21117.4°117.5°
C6N1C8H2268.2°66.2°
C6N1C8H23172.5°178.4°
C6N1C3H25178.2°178.4°
C6N1C3H2660.9°60.5°
C8N1C6H20174.3°178.6°
C8N1C6H2167.5°66.1°
N1C8H22H23119.1°117.6°
C8N1C3H2554.3°60.4°
C8N1C3H26175.2°178.3°
C3N1C6H2049.6°55.7°
C3N1C6H21167.9°171.1°
C3N1C8H22166.9°171.0°
C3N1C8H2347.5°55.6°
N1C3H25H26121.4°118.6°
H1C17H2H3119.9°119.2°
H1C17C18RU1.3°143.8°
H2C17C18RU118.8°96.1°
H3C17C18RU121.2°24.3°
H8C24C25H1051.1°154.3°
H8C24C25H1169.8°37.7°
H8C24C21RU12.4°133.1°
H9C24C25H10169.1°92.1°
H9C24C25H1148.1°151.3°
H9C24C21RU130.3°113.1°
H4C19C20H53.1°0.4°
H4C19RUC21143.2°142.3°
H4C19RUC22179.2°179.2°
H4C19RUC23142.4°143.5°
H5C20RUC18144.1°141.7°
H5C20RUC22141.3°144.0°
H5C20RUC23178.7°178.9°
H6C22C23H71.5°1.1°
H6C22RUC18143.1°141.8°
H6C22RUC19179.7°178.9°
H6C22RUC20141.5°144.9°
H7C23RUC19140.2°144.4°
H7C23RUC20178.6°179.2°
H7C23RUC21143.2°142.6°
C18RUC20C2274.6°74.3°
C19RUC21C2376.1°72.5°

259016

PDB entries from 2026-09-02

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