RUB
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| C1 | C2 | sing | 1.51Å | 1.53Å | |
| C1 | O1 | sing | 1.43Å | 1.45Å | |
| C1 | H11 | sing | 1.09Å | 1.11Å | |
| C1 | H12 | sing | 1.09Å | 1.12Å | |
| C2 | C3 | sing | 1.51Å | 1.58Å | |
| C2 | O2 | doub | 1.21Å | 1.25Å | |
| C3 | C4 | sing | 1.53Å | 1.53Å | |
| C3 | O3 | sing | 1.43Å | 1.38Å | |
| C3 | H3 | sing | 1.09Å | 1.12Å | |
| C4 | C5 | sing | 1.53Å | 1.54Å | |
| C4 | O4 | sing | 1.43Å | 1.39Å | |
| C4 | H4 | sing | 1.09Å | 1.11Å | |
| C5 | O5 | sing | 1.43Å | 1.44Å | |
| C5 | H51 | sing | 1.09Å | 1.11Å | |
| C5 | H52 | sing | 1.09Å | 1.12Å | |
| O1 | P1 | sing | 1.61Å | 1.61Å | |
| O3 | HO3 | sing | 0.97Å | 0.95Å | |
| O4 | HO4 | sing | 0.97Å | 0.95Å | |
| O5 | P2 | sing | 1.61Å | 1.64Å | |
| P1 | O1P | doub | 1.48Å | 1.46Å | |
| P1 | O2P | sing | 1.61Å | 1.60Å | |
| P1 | O3P | sing | 1.61Å | 1.46Å | |
| P2 | O4P | doub | 1.48Å | 1.51Å | |
| P2 | O5P | sing | 1.61Å | 1.59Å | |
| P2 | O6P | sing | 1.61Å | 1.49Å | |
| O2P | HOP2 | sing | 0.97Å | 0.95Å | |
| O3P | HOP3 | sing | 0.97Å | 0.95Å | |
| O5P | HOP5 | sing | 0.97Å | 0.95Å | |
| O6P | HOP6 | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| C2 | C1 | O1 | 119.7° | 109.5° |
| C2 | C1 | H11 | 108.6° | 109.4° |
| C2 | C1 | H12 | 108.5° | 109.5° |
| C1 | C2 | C3 | 115.8° | 120.1° |
| C1 | C2 | O2 | 121.5° | 119.9° |
| O1 | C1 | H11 | 108.5° | 109.5° |
| O1 | C1 | H12 | 108.5° | 109.5° |
| C1 | O1 | P1 | 120.4° | 106.8° |
| H11 | C1 | H12 | 101.4° | 109.5° |
| C3 | C2 | O2 | 122.6° | 120.0° |
| C2 | C3 | C4 | 114.6° | 109.5° |
| C2 | C3 | O3 | 109.3° | 109.5° |
| C2 | C3 | H3 | 105.5° | 109.5° |
| C4 | C3 | O3 | 107.5° | 109.5° |
| C4 | C3 | H3 | 107.4° | 109.4° |
| C3 | C4 | C5 | 112.9° | 109.5° |
| C3 | C4 | O4 | 109.9° | 109.5° |
| C3 | C4 | H4 | 106.4° | 109.5° |
| O3 | C3 | H3 | 112.8° | 109.5° |
| C3 | O3 | HO3 | 109.3° | 106.8° |
| C5 | C4 | O4 | 108.4° | 109.5° |
| C5 | C4 | H4 | 108.1° | 109.4° |
| C4 | C5 | O5 | 118.9° | 109.5° |
| C4 | C5 | H51 | 108.8° | 109.5° |
| C4 | C5 | H52 | 108.8° | 109.5° |
| O4 | C4 | H4 | 111.1° | 109.4° |
| C4 | O4 | HO4 | 109.9° | 106.9° |
| O5 | C5 | H51 | 108.8° | 109.4° |
| O5 | C5 | H52 | 108.8° | 109.5° |
| C5 | O5 | P2 | 122.3° | 106.9° |
| H51 | C5 | H52 | 101.2° | 109.4° |
| O1 | P1 | O1P | 108.7° | 109.5° |
| O1 | P1 | O2P | 101.8° | 109.5° |
| O1 | P1 | O3P | 108.9° | 109.5° |
| O5 | P2 | O4P | 107.5° | 109.4° |
| O5 | P2 | O5P | 103.0° | 109.5° |
| O5 | P2 | O6P | 108.6° | 109.5° |
| O1P | P1 | O2P | 108.1° | 109.4° |
| O1P | P1 | O3P | 119.7° | 109.4° |
| O2P | P1 | O3P | 108.2° | 109.5° |
| P1 | O2P | HOP2 | 101.9° | 106.8° |
| P1 | O3P | HOP3 | 108.8° | 106.7° |
| O4P | P2 | O5P | 108.9° | 109.5° |
| O4P | P2 | O6P | 120.2° | 109.4° |
| O5P | P2 | O6P | 107.4° | 109.5° |
| P2 | O5P | HOP5 | 103.0° | 106.8° |
| P2 | O6P | HOP6 | 108.6° | 106.8° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| C2 | C1 | O1 | H11 | 125.3° | 120.0° |
| C2 | C1 | O1 | H12 | 125.3° | 120.0° |
| C2 | C1 | H11 | H12 | 114.2° | 119.9° |
| C1 | C2 | C3 | O2 | 177.1° | 180.0° |
| C1 | C2 | C3 | C4 | 68.9° | 90.0° |
| C1 | C2 | C3 | O3 | 170.5° | 150.0° |
| C1 | C2 | C3 | H3 | 48.9° | 30.0° |
| C2 | C1 | O1 | P1 | 177.6° | 180.0° |
| O1 | C1 | H11 | H12 | 114.2° | 120.0° |
| O1 | C1 | C2 | C3 | 169.2° | 180.0° |
| O1 | C1 | C2 | O2 | 8.0° | 0.0° |
| C1 | O1 | P1 | O1P | 172.8° | 60.0° |
| C1 | O1 | P1 | O2P | 73.2° | 180.0° |
| C1 | O1 | P1 | O3P | 40.9° | 59.9° |
| H11 | C1 | C2 | C3 | 65.5° | 60.0° |
| H11 | C1 | C2 | O2 | 117.3° | 120.0° |
| H11 | C1 | O1 | P1 | 52.3° | 60.0° |
| H12 | C1 | C2 | C3 | 43.9° | 59.9° |
| H12 | C1 | C2 | O2 | 133.2° | 120.0° |
| H12 | C1 | O1 | P1 | 57.1° | 60.0° |
| C2 | C3 | C4 | O3 | 121.6° | 120.0° |
| C2 | C3 | C4 | H3 | 116.8° | 120.0° |
| C2 | C3 | O3 | H3 | 117.0° | 120.0° |
| C2 | C3 | C4 | C5 | 176.3° | 180.0° |
| C2 | C3 | C4 | O4 | 62.6° | 60.0° |
| C2 | C3 | C4 | H4 | 57.8° | 60.0° |
| C2 | C3 | O3 | HO3 | 180.0° | 60.0° |
| O2 | C2 | C3 | C4 | 114.0° | 90.0° |
| O2 | C2 | C3 | O3 | 6.6° | 30.0° |
| O2 | C2 | C3 | H3 | 128.2° | 150.0° |
| C4 | C3 | O3 | H3 | 118.1° | 119.9° |
| C3 | C4 | C5 | O4 | 122.0° | 120.0° |
| C3 | C4 | C5 | H4 | 117.5° | 120.0° |
| C3 | C4 | O4 | H4 | 117.6° | 120.0° |
| C3 | C4 | C5 | O5 | 162.1° | 180.0° |
| C3 | C4 | C5 | H51 | 36.8° | 59.9° |
| C3 | C4 | C5 | H52 | 72.6° | 60.0° |
| C4 | C3 | O3 | HO3 | 55.2° | 60.0° |
| C3 | C4 | O4 | HO4 | 180.0° | 60.0° |
| O3 | C3 | C4 | C5 | 54.7° | 60.0° |
| O3 | C3 | C4 | O4 | 175.8° | 180.0° |
| O3 | C3 | C4 | H4 | 63.8° | 60.0° |
| H3 | C3 | C4 | C5 | 66.9° | 60.0° |
| H3 | C3 | C4 | O4 | 54.2° | 60.0° |
| H3 | C3 | C4 | H4 | 174.6° | 180.0° |
| H3 | C3 | O3 | HO3 | 63.0° | 180.0° |
| C5 | C4 | O4 | H4 | 118.7° | 119.9° |
| C4 | C5 | O5 | H51 | 125.3° | 120.1° |
| C4 | C5 | O5 | H52 | 125.3° | 120.0° |
| C4 | C5 | H51 | H52 | 114.5° | 120.0° |
| C5 | C4 | O4 | HO4 | 56.2° | 60.0° |
| C4 | C5 | O5 | P2 | 149.2° | 180.0° |
| O4 | C4 | C5 | O5 | 75.9° | 60.0° |
| O4 | C4 | C5 | H51 | 158.8° | 180.0° |
| O4 | C4 | C5 | H52 | 49.4° | 60.1° |
| H4 | C4 | C5 | O5 | 44.6° | 59.9° |
| H4 | C4 | C5 | H51 | 80.6° | 60.1° |
| H4 | C4 | C5 | H52 | 169.9° | 180.0° |
| H4 | C4 | O4 | HO4 | 62.5° | 179.9° |
| O5 | C5 | H51 | H52 | 114.5° | 119.9° |
| C5 | O5 | P2 | O4P | 165.4° | 60.0° |
| C5 | O5 | P2 | O5P | 50.5° | 180.0° |
| C5 | O5 | P2 | O6P | 63.1° | 60.0° |
| H51 | C5 | O5 | P2 | 85.5° | 59.9° |
| H52 | C5 | O5 | P2 | 23.9° | 60.0° |
| O1 | P1 | O1P | O2P | 109.8° | 120.0° |
| O1 | P1 | O1P | O3P | 125.8° | 120.0° |
| O1 | P1 | O2P | O3P | 114.6° | 120.1° |
| O1 | P1 | O2P | HOP2 | 180.0° | 179.9° |
| O1 | P1 | O3P | HOP3 | 179.9° | 60.1° |
| O5 | P2 | O4P | O5P | 110.9° | 120.0° |
| O5 | P2 | O4P | O6P | 124.8° | 120.0° |
| O5 | P2 | O5P | O6P | 114.5° | 120.1° |
| O5 | P2 | O5P | HOP5 | 180.0° | 180.0° |
| O5 | P2 | O6P | HOP6 | 180.0° | 60.0° |
| O1P | P1 | O2P | O3P | 131.0° | 120.0° |
| O1P | P1 | O2P | HOP2 | 65.6° | 60.0° |
| O1P | P1 | O3P | HOP3 | 54.3° | 180.0° |
| O2P | P1 | O3P | HOP3 | 70.1° | 60.0° |
| O3P | P1 | O2P | HOP2 | 65.4° | 60.0° |
| O4P | P2 | O5P | O6P | 131.6° | 120.0° |
| O4P | P2 | O5P | HOP5 | 66.1° | 60.0° |
| O4P | P2 | O6P | HOP6 | 55.7° | 180.0° |
| O5P | P2 | O6P | HOP6 | 69.3° | 60.1° |
| O6P | P2 | O5P | HOP5 | 65.5° | 60.0° |
