Summary Geometry PCM/PTM Related PDB entries

RU7

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C10	C8	sing	1.54Å	1.53Å
C10	H101	sing	0.97Å	1.10Å
C10	H102	sing	0.97Å	1.10Å
C10	H103	sing	0.97Å	1.10Å
C8	C9	sing	1.54Å	1.52Å
C8	C4	sing	1.53Å	1.49Å
C8	H8	sing	0.99Å	1.10Å
C9	H91	sing	0.97Å	1.10Å
C9	H92	sing	0.97Å	1.10Å
C9	H93	sing	0.97Å	1.10Å
C4	C5	sing	1.42Å	1.40Å
C4	C3	doub	1.41Å	1.39Å
C4	RU1	sing	1.28Å	2.34Å
C5	C6	doub	1.40Å	1.40Å
C5	RU1	sing	1.72Å	2.39Å
C5	H5	sing	0.94Å	1.10Å
C6	C1	sing	1.39Å	1.40Å
C6	RU1	sing	1.94Å	2.34Å
C6	H6	sing	0.94Å	1.10Å
C3	C2	sing	1.44Å	1.40Å
C3	RU1	sing	0.94Å	2.24Å
C3	H3	sing	0.94Å	1.10Å
C2	C1	doub	1.39Å	1.40Å
C2	RU1	sing	1.30Å	2.21Å
C2	H2	sing	0.94Å	1.10Å
C1	C7	sing	1.52Å	1.51Å
C1	RU1	sing	1.81Å	2.25Å
C7	H71	sing	0.97Å	1.10Å
C7	H72	sing	0.97Å	1.10Å
C7	H73	sing	0.97Å	1.10Å
RU1	CL1	sing	2.44Å	2.43Å
RU1	CL2	sing	2.44Å	2.34Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C8	C10	H101	109.5°	109.8°
C8	C10	H102	109.4°	109.3°
C8	C10	H103	109.5°	109.8°
C10	C8	C9	110.3°	111.5°
C10	C8	C4	108.3°	112.7°
C10	C8	H8	107.8°	106.5°
H101	C10	H102	109.5°	109.2°
H101	C10	H103	109.5°	109.4°
H102	C10	H103	109.5°	109.3°
C9	C8	C4	114.0°	113.1°
C9	C8	H8	107.9°	106.5°
C8	C9	H91	109.5°	109.4°
C8	C9	H92	109.5°	109.8°
C8	C9	H93	109.5°	109.8°
C4	C8	H8	108.3°	105.9°
C8	C4	C5	122.5°	122.7°
C8	C4	C3	118.3°	121.0°
C8	C4	RU1	130.0°	156.2°
H91	C9	H92	109.5°	109.2°
H91	C9	H93	109.5°	109.2°
H92	C9	H93	109.5°	109.5°
C5	C4	C3	119.1°	116.0°
C5	C4	RU1	74.4°	78.8°
C4	C5	C6	120.1°	122.6°
C4	C5	RU1	71.2°	46.9°
C4	C5	H5	116.9°	118.5°
C3	C4	RU1	68.4°	40.7°
C4	C3	C2	121.0°	120.0°
C4	C3	RU1	76.4°	61.9°
C4	C3	H3	118.0°	120.0°
C4	RU1	C5	34.4°	54.4°
C4	RU1	C6	62.4°	98.4°
C4	RU1	C3	35.2°	77.3°
C4	RU1	C2	64.4°	146.2°
C4	RU1	C1	75.3°	138.2°
C4	RU1	CL1	161.7°	104.0°
C4	RU1	CL2	111.7°	91.0°
C6	C5	RU1	71.0°	76.2°
C6	C5	H5	116.8°	118.3°
C5	C6	C1	120.4°	121.4°
C5	C6	RU1	74.5°	59.4°
C5	C6	H6	117.1°	119.4°
RU1	C5	H5	105.4°	159.0°
C5	RU1	C6	34.5°	44.4°
C5	RU1	C3	62.5°	126.8°
C5	RU1	C2	74.8°	131.3°
C5	RU1	C1	63.0°	87.0°
C5	RU1	CL1	127.4°	125.7°
C5	RU1	CL2	145.4°	79.5°
C1	C6	RU1	69.0°	63.4°
C1	C6	H6	117.3°	119.0°
C6	C1	C2	119.5°	117.2°
C6	C1	C7	121.2°	121.3°
C6	C1	RU1	75.7°	73.2°
RU1	C6	H6	105.9°	171.5°
C6	RU1	C3	74.7°	150.7°
C6	RU1	C2	64.0°	92.3°
C6	RU1	C1	35.3°	43.3°
C6	RU1	CL1	100.3°	125.5°
C6	RU1	CL2	162.4°	70.5°
C2	C3	RU1	70.2°	62.3°
C2	C3	H3	117.6°	120.0°
C3	C2	C1	119.8°	122.3°
C3	C2	RU1	73.1°	40.0°
C3	C2	H2	118.6°	118.8°
RU1	C3	H3	106.8°	160.6°
C3	RU1	C2	36.7°	77.7°
C3	RU1	C1	65.1°	125.5°
C3	RU1	CL1	151.0°	83.2°
C3	RU1	CL2	91.5°	80.5°
C1	C2	RU1	73.7°	84.2°
C1	C2	H2	118.7°	118.6°
C2	C1	C7	119.3°	121.4°
C2	C1	RU1	69.9°	45.7°
RU1	C2	H2	107.7°	150.6°
C2	RU1	C1	36.4°	50.1°
C2	RU1	CL1	115.1°	95.3°
C2	RU1	CL2	98.4°	62.5°
C7	C1	RU1	125.7°	163.0°
C1	C7	H71	109.5°	109.8°
C1	C7	H72	109.5°	109.8°
C1	C7	H73	109.5°	109.5°
C1	RU1	CL1	94.0°	112.6°
C1	RU1	CL2	128.7°	63.7°
H71	C7	H72	109.5°	109.2°
H71	C7	H73	109.5°	109.3°
H72	C7	H73	109.4°	109.3°
CL1	RU1	CL2	86.5°	154.8°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
C8	C10	H101	H102	120.0°	119.9°
C8	C10	H101	H103	120.0°	120.5°
C8	C10	H102	H103	120.0°	120.2°
C10	C8	C9	C4	122.1°	128.3°
C10	C8	C9	H8	117.5°	115.8°
C10	C8	C4	H8	116.6°	116.1°
C10	C8	C9	H91	180.0°	179.8°
C10	C8	C9	H92	60.0°	59.9°
C10	C8	C9	H93	60.0°	60.5°
C10	C8	C4	C5	70.0°	66.3°
C10	C8	C4	C3	108.5°	119.9°
C10	C8	C4	RU1	166.8°	85.9°
H101	C10	H102	H103	120.0°	119.7°
H101	C10	C8	C9	180.0°	60.1°
H101	C10	C8	C4	54.6°	68.4°
H101	C10	C8	H8	62.4°	175.9°
H102	C10	C8	C9	60.0°	179.9°
H102	C10	C8	C4	65.4°	51.4°
H102	C10	C8	H8	177.6°	64.3°
H103	C10	C8	C9	60.0°	60.3°
H103	C10	C8	C4	174.6°	171.3°
H103	C10	C8	H8	57.6°	55.6°
C9	C8	C4	H8	120.2°	116.3°
C8	C9	H91	H92	120.0°	120.2°
C8	C9	H91	H93	120.0°	120.1°
C8	C9	H92	H93	120.0°	120.6°
C9	C8	C4	C5	53.2°	61.3°
C9	C8	C4	C3	128.3°	112.5°
C9	C8	C4	RU1	43.6°	146.5°
C4	C8	C9	H91	57.9°	51.5°
C4	C8	C9	H92	177.9°	68.4°
C4	C8	C9	H93	62.1°	171.2°
C8	C4	C5	C3	178.5°	174.1°
C8	C4	C5	RU1	127.9°	168.9°
C8	C4	C3	RU1	124.9°	159.8°
C8	C4	C5	C6	178.7°	178.5°
C8	C4	C5	H5	29.7°	7.7°
C8	C4	RU1	C6	147.6°	162.2°
C8	C4	C3	C2	178.5°	176.7°
C8	C4	C3	H3	22.8°	1.8°
C8	C4	RU1	C2	139.8°	90.7°
C8	C4	RU1	C1	177.0°	177.2°
C8	C4	RU1	CL1	127.4°	32.3°
C8	C4	RU1	CL2	50.7°	127.3°
H8	C8	C9	H91	62.5°	64.5°
H8	C8	C9	H92	57.5°	175.7°
H8	C8	C9	H93	177.5°	55.3°
H8	C8	C4	C5	173.4°	177.6°
H8	C8	C4	C3	8.1°	3.8°
H8	C8	C4	RU1	76.5°	30.2°
H91	C9	H92	H93	120.0°	119.5°
C5	C4	C3	RU1	56.5°	26.0°
C4	C5	C6	RU1	53.5°	7.1°
C4	C5	C6	H5	151.5°	170.8°
C4	C5	RU1	H5	113.7°	52.0°
C4	C5	C6	C1	0.1°	6.7°
C4	C5	C6	H6	153.7°	177.5°
C5	C4	C3	C2	0.0°	2.4°
C5	C4	C3	H3	158.6°	176.1°
C4	C5	RU1	C2	66.7°	137.0°
C4	C5	RU1	C1	103.9°	162.7°
C5	C4	RU1	CL1	7.8°	124.1°
C5	C4	RU1	CL2	170.3°	76.3°
C3	C4	C5	C6	0.2°	7.4°
C3	C4	C5	H5	151.8°	178.2°
C4	C3	RU1	C6	63.7°	84.7°
C4	C3	C2	RU1	59.5°	23.5°
C4	C3	C2	H3	158.7°	178.5°
C4	C3	RU1	H3	115.5°	101.0°
C4	C3	C2	C1	0.4°	3.4°
C4	C3	C2	H2	160.9°	176.6°
C4	C3	RU1	C1	100.0°	141.1°
C3	C4	RU1	CL1	123.1°	79.6°
C3	C4	RU1	CL2	58.8°	80.0°
C4	RU1	C1	C6	62.8°	30.4°
C4	RU1	C6	C2	73.3°	147.9°
C4	RU1	C6	CL1	173.7°	113.9°
C4	RU1	C6	CL2	74.6°	88.1°
C4	RU1	C6	H6	142.3°	90.9°
C4	RU1	C1	C2	66.6°	133.7°
C4	RU1	C2	CL1	159.8°	125.1°
C4	RU1	C2	CL2	110.1°	42.2°
C4	RU1	C2	H2	144.3°	97.0°
C4	RU1	C1	C7	178.9°	179.0°
C4	RU1	C1	CL1	165.0°	148.8°
C4	RU1	C1	CL2	106.3°	58.6°
C4	RU1	CL1	CL2	178.2°	124.9°
C6	C5	RU1	H5	113.6°	136.2°
C5	C6	C1	RU1	56.2°	13.3°
C5	C6	C1	H6	153.8°	175.9°
C5	C6	RU1	H6	114.4°	84.1°
C5	C6	RU1	C3	63.5°	86.0°
C5	C6	C1	C2	0.2°	0.5°
C5	C6	RU1	C2	101.2°	154.6°
C5	C6	C1	C7	179.5°	176.4°
C6	C5	RU1	CL1	44.2°	106.8°
C6	C5	RU1	CL2	148.7°	72.8°
C5	RU1	C2	C3	64.2°	128.7°
C5	RU1	C3	C1	71.2°	117.0°
C5	RU1	C3	CL1	118.4°	130.1°
C5	RU1	C3	CL2	156.1°	69.2°
C5	RU1	C3	H3	144.3°	125.0°
C5	RU1	C1	C2	101.2°	154.9°
C5	RU1	C2	CL1	124.6°	149.5°
C5	RU1	C2	CL2	145.3°	43.1°
C5	RU1	C2	H2	179.5°	177.6°
C5	RU1	C1	C7	146.6°	159.8°
C5	RU1	C1	CL1	130.4°	127.6°
C5	RU1	C1	CL2	140.8°	79.8°
C5	RU1	CL1	CL2	172.7°	179.2°
H5	C5	C6	C1	151.7°	177.4°
H5	C5	C6	H6	2.1°	6.7°
H5	C5	RU1	C3	143.1°	81.3°
H5	C5	RU1	C2	179.6°	171.0°
H5	C5	RU1	C1	142.5°	145.2°
H5	C5	RU1	CL1	69.4°	29.4°
H5	C5	RU1	CL2	97.7°	150.9°
C1	C6	RU1	H6	113.7°	109.0°
C6	C1	C2	C3	0.5°	4.5°
C6	C1	RU1	C3	98.7°	143.6°
C6	C1	C2	C7	179.8°	176.9°
C6	C1	C2	RU1	59.3°	17.2°
C6	C1	C2	H2	160.9°	177.7°
C6	C1	C7	RU1	94.5°	146.7°
C6	C1	C7	H71	180.0°	151.0°
C6	C1	C7	H72	60.0°	31.0°
C6	C1	C7	H73	60.0°	89.0°
C1	C6	RU1	CL1	82.3°	86.0°
C1	C6	RU1	CL2	29.3°	71.9°
C6	RU1	C2	C3	99.3°	152.2°
C6	RU1	C3	CL1	83.5°	169.3°
C6	RU1	C3	CL2	169.0°	8.5°
C6	RU1	C3	H3	179.2°	174.3°
C6	RU1	C2	CL1	89.5°	126.0°
C6	RU1	C2	CL2	179.6°	66.7°
C6	RU1	C2	H2	145.4°	154.1°
C6	RU1	CL1	CL2	163.7°	123.8°
H6	C6	RU1	C3	177.9°	170.1°
H6	C6	C1	C2	154.0°	176.4°
H6	C6	RU1	C2	144.4°	121.2°
H6	C6	C1	C7	25.8°	0.5°
H6	C6	RU1	CL1	31.4°	23.1°
H6	C6	RU1	CL2	143.0°	179.0°
C2	C3	RU1	H3	114.0°	102.0°
C3	C2	C1	RU1	58.8°	12.8°
C3	C2	C1	H2	160.4°	173.2°
C3	C2	RU1	H2	115.3°	53.7°
C3	C2	C1	C7	179.3°	178.7°
C2	C3	RU1	CL1	16.7°	97.0°
C2	C3	RU1	CL2	102.2°	63.7°
C3	RU1	C1	C7	143.0°	65.8°
C3	RU1	C1	CL1	159.1°	98.0°
C3	RU1	C1	CL2	70.4°	54.6°
C3	RU1	CL1	CL2	86.8°	49.8°
H3	C3	C2	C1	158.3°	178.0°
H3	C3	C2	H2	2.2°	4.8°
H3	C3	RU1	C1	144.5°	117.9°
H3	C3	RU1	CL1	97.3°	5.0°
H3	C3	RU1	CL2	11.8°	165.8°
C1	C2	RU1	H2	115.6°	143.2°
C2	C1	C7	RU1	85.2°	36.6°
C2	C1	C7	H71	0.2°	32.2°
C2	C1	C7	H72	119.8°	152.3°
C2	C1	C7	H73	120.2°	87.8°
C1	C2	RU1	CL1	59.7°	115.1°
C1	C2	RU1	CL2	149.8°	77.5°
C2	RU1	CL1	CL2	97.7°	27.1°
H2	C2	C1	C7	18.8°	5.4°
H2	C2	RU1	CL1	55.9°	28.1°
H2	C2	RU1	CL2	34.2°	139.2°
C1	C7	H71	H72	120.0°	120.4°
C1	C7	H71	H73	120.0°	120.1°
C1	C7	H72	H73	120.0°	120.1°
C7	C1	RU1	CL1	16.1°	32.2°
C7	C1	RU1	CL2	72.6°	120.4°
RU1	C1	C7	H71	85.4°	4.4°
RU1	C1	C7	H72	34.6°	115.7°
RU1	C1	C7	H73	154.5°	124.4°
C1	RU1	CL1	CL2	128.6°	75.9°
H71	C7	H72	H73	120.0°	119.5°

Definition date:	2005-05-13
Last modified:	2026-07-31
Release status:	REL
Processing site:	RCSB