Loading
PDBj
English日本語简体中文繁體中文한국어
✖
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
SummaryGeometryRelated PDB entries

RU3

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
O4C1doub1.21Å1.22Å
N1RU1sing2.12Å1.80Å
N4RUsing2.12Å1.80Å
N5RUsing2.12Å1.80Å
C1O3sing1.34Å1.45Å
O3RUsing1.84Å1.80Å
O1RU1sing1.84Å1.80Å
O1Csing1.34Å1.46Å
RUOsing1.84Å1.82Å
RUN7sing2.12Å1.80Å
RUN6sing2.12Å1.80Å
NRU1sing2.12Å1.80Å
RU1N2sing2.12Å1.80Å
RU1Osing1.84Å1.82Å
RU1N3sing2.12Å1.80Å
CO2doub1.21Å1.22Å
NH1sing1.01Å1.00Å
NH2sing1.01Å1.00Å
CH3sing1.08Å1.08Å
C1H4sing1.08Å1.08Å
N1H5sing1.01Å1.00Å
N1H6sing1.01Å1.00Å
N2H7sing1.01Å1.00Å
N2H8sing1.01Å1.00Å
N3H9sing1.01Å1.00Å
N3H10sing1.01Å1.00Å
N4H11sing1.01Å1.00Å
N4H12sing1.01Å1.00Å
N5H13sing1.01Å1.00Å
N5H14sing1.01Å1.00Å
N6H15sing1.01Å1.00Å
N6H16sing1.01Å1.00Å
N7H17sing1.01Å1.00Å
N7H18sing1.01Å1.00Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
O4C1O3120.5°120.0°
O4C1H4119.8°120.0°
N1RU1O189.8°90.0°
N1RU1N90.8°90.0°
N1RU1N289.5°90.0°
N1RU1O90.9°90.0°
N1RU1N3179.3°180.0°
RU1N1H5109.5°111.0°
RU1N1H6109.5°111.0°
N4RUN589.5°90.0°
N4RUO389.0°90.0°
N4RUO93.9°90.0°
N4RUN791.0°90.0°
N4RUN6178.2°180.0°
RUN4H11109.5°111.0°
RUN4H12109.5°111.0°
N5RUO390.2°90.0°
N5RUO89.2°90.0°
N5RUN7179.2°180.0°
N5RUN690.0°90.0°
RUN5H13109.5°111.0°
RUN5H14109.5°111.0°
C1O3RU121.8°117.0°
O3C1H4119.7°120.1°
O3RUO177.0°179.9°
O3RUN789.2°90.0°
O3RUN689.2°90.0°
RU1O1C120.2°117.0°
O1RU1N87.9°90.0°
O1RU1N290.1°90.0°
O1RU1O178.1°NaN°
O1RU1N389.9°90.0°
O1CO2120.3°120.0°
O1CH3119.9°120.0°
ORUN791.4°90.0°
ORUN687.9°90.0°
RUORU1133.2°114.0°
N7RUN689.5°90.0°
RUN7H17109.5°111.0°
RUN7H18109.5°111.0°
RUN6H15109.5°111.0°
RUN6H16109.5°111.0°
NRU1N2177.9°180.0°
NRU1O93.9°90.0°
NRU1N389.8°90.0°
RU1NH1109.5°111.0°
RU1NH2109.5°111.0°
N2RU1O88.2°90.0°
N2RU1N389.9°90.0°
RU1N2H7109.5°111.0°
RU1N2H8109.5°110.9°
ORU1N389.4°90.0°
RU1N3H9109.5°111.0°
RU1N3H10109.5°111.0°
O2CH3119.8°120.0°
H1NH2109.5°111.0°
H5N1H6109.5°110.9°
H7N2H8109.4°111.0°
H9N3H10109.5°111.0°
H11N4H12109.5°111.0°
H13N5H14109.4°111.0°
H15N6H16109.4°111.0°
H17N7H18109.4°111.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
O4C1O3H4180.0°179.9°
O4C1O3RU84.2°180.0°
N1RU1O1N90.8°90.0°
N1RU1O1N289.5°90.0°
N1RU1O1O111.8°120.0°
N1RU1O1N3179.4°180.0°
N1RU1O1C168.0°135.0°
N1RU1ORU67.2°54.4°
N1RU1NN297.7°129.6°
N1RU1NO91.0°90.0°
N1RU1NN3179.6°180.0°
N1RU1N2O90.9°90.0°
N1RU1N2N3179.6°180.0°
N1RU1ON3179.4°180.0°
N1RU1NH1180.0°45.0°
N1RU1NH260.0°78.9°
RU1N1H5H6120.0°124.0°
N1RU1N2H7180.0°165.9°
N1RU1N2H860.0°70.2°
N1RU1N3H9180.0°52.9°
N1RU1N3H1060.0°176.7°
N4RUN5O389.0°90.0°
N4RUN5O93.9°90.0°
N4RUN5N7123.6°165.6°
N4RUN5N6178.3°180.0°
N4RUO3C125.5°135.0°
N4RUO3O167.2°158.4°
N4RUO3N791.0°90.0°
N4RUO3N6179.5°180.0°
N4RUON791.1°90.0°
N4RUON6179.5°180.0°
N4RUN7N6178.2°180.0°
N4RUORU126.7°173.5°
RUN4H11H12120.0°123.9°
N4RUN5H13180.0°11.0°
N4RUN5H1460.0°135.0°
N4RUN6H15180.0°162.3°
N4RUN6H1660.0°73.8°
N4RUN7H17180.0°171.2°
N4RUN7H1860.0°64.8°
N5RUO3C1115.0°45.0°
N5RUO3O77.8°68.4°
N5RUO3N7179.6°180.0°
N5RUO3N690.0°90.0°
N5RUON7179.5°180.0°
N5RUON690.0°90.0°
N5RUN7N654.6°14.4°
N5RUORU1116.1°96.5°
N5RUN4H11180.0°11.1°
N5RUN4H1260.0°135.0°
RUN5H13H14120.0°124.0°
N5RUN6H15106.6°147.0°
N5RUN6H16133.4°23.1°
N5RUN7H1756.4°23.2°
N5RUN7H18176.4°100.7°
C1O3RUO167.2°23.4°
C1O3RUN765.4°135.0°
C1O3RUN6155.0°45.0°
O3RUON7101.7°111.6°
O3RUON612.2°21.6°
O3RUN7N689.2°90.0°
O3RUORU1166.1°28.1°
RUO3C1H495.8°0.0°
O3RUN4H1189.8°79.0°
O3RUN4H12150.2°45.0°
O3RUN5H1391.0°101.0°
O3RUN5H1429.0°135.0°
O3RUN6H15163.2°57.0°
O3RUN6H1643.2°66.9°
O3RUN7H1791.0°81.2°
O3RUN7H18149.0°154.9°
O1RU1ORU179.0°90.0°
O1RU1NN28.0°39.6°
O1RU1NO179.3°180.0°
O1RU1NN389.9°90.0°
O1RU1N2O179.3°180.0°
O1RU1N2N389.9°90.0°
O1RU1ON367.6°90.0°
RU1O1CO255.0°180.0°
O1RU1NH190.3°45.0°
O1RU1NH229.7°168.9°
RU1O1CH3125.0°0.0°
O1RU1N1H5180.0°129.9°
O1RU1N1H660.0°6.0°
O1RU1N2H790.2°75.9°
O1RU1N2H8149.8°160.2°
O1RU1N3H9121.5°134.9°
O1RU1N3H10118.4°11.1°
CO1RU1N101.2°135.0°
CO1RU1N278.5°45.0°
CO1RU1O56.2°90.0°
CO1RU1N311.4°45.0°
O1CO2H3180.0°180.0°
ORUN7N687.9°90.0°
RUORU1N23.7°144.4°
RUORU1N2156.6°35.6°
RUORU1N3113.4°125.6°
ORUN4H1190.9°101.0°
ORUN4H1229.2°135.0°
ORUN5H1386.2°79.0°
ORUN5H14153.9°44.9°
ORUN6H1517.4°123.0°
ORUN6H16137.4°113.1°
ORUN7H1786.1°98.8°
ORUN7H1833.9°25.2°
N7RUORU164.4°83.4°
N7RUN4H110.6°169.0°
N7RUN4H12120.7°45.0°
N7RUN5H1356.4°154.5°
N7RUN5H1463.6°30.6°
N7RUN6H1574.1°33.0°
N7RUN6H1646.0°156.9°
RUN7H17H18120.0°123.9°
N6RUORU1153.9°6.5°
N6RUN4H11106.6°61.7°
N6RUN4H12133.4°174.3°
N6RUN5H131.7°169.0°
N6RUN5H14118.3°45.0°
RUN6H15H16120.0°124.0°
N6RUN7H171.8°8.8°
N6RUN7H18121.7°115.1°
NRU1N2O171.3°140.4°
NRU1N2N381.9°50.4°
NRU1ON389.7°90.0°
RU1NH1H2120.0°123.9°
NRU1N1H592.1°39.9°
NRU1N1H627.9°84.0°
NRU1N2H782.3°36.3°
NRU1N2H8157.8°160.1°
NRU1N3H933.7°135.1°
NRU1N3H10153.7°101.1°
N2RU1ON390.0°90.0°
N2RU1NH182.3°84.6°
N2RU1NH237.7°151.5°
N2RU1N1H589.9°140.1°
N2RU1N1H6150.1°96.0°
RU1N2H7H8120.0°123.9°
N2RU1N3H9148.4°45.0°
N2RU1N3H1028.4°78.9°
ORU1NH189.0°135.0°
ORU1NH2151.0°11.1°
ORU1N1H51.7°50.1°
ORU1N1H6121.7°174.0°
ORU1N2H789.1°104.1°
ORU1N2H830.9°19.8°
ORU1N3H960.2°45.1°
ORU1N3H1059.8°168.9°
N3RU1NH10.4°135.0°
N3RU1NH2119.6°101.1°
N3RU1N1H5121.5°42.3°
N3RU1N1H6118.5°166.2°
N3RU1N2H70.4°14.1°
N3RU1N2H8120.3°109.8°
RU1N3H9H10120.0°123.9°

222415

PDB entries from 2024-07-10

PDB statisticsPDBj update infoContact PDBjnumon