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SummaryGeometryRelated PDB entries

RTD

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
CD2CG2doub1.38Å1.39ÅAromatic
CD2CEsing1.38Å1.39ÅAromatic
CG2CBsing1.38Å1.40ÅAromatic
O1Cdoub1.21Å1.25Å
CECD1doub1.38Å1.39ÅAromatic
O2Csing1.34Å1.25Å
CCAsing1.51Å1.59Å
CBCAsing1.51Å1.50Å
CBCG1doub1.38Å1.40ÅAromatic
S1CAsing1.81Å1.84Å
CD1CG1sing1.38Å1.39ÅAromatic
O2H1sing0.97Å0.95Å
CAHAsing1.09Å1.10Å
S1H2sing1.34Å1.30Å
CG1HG1sing1.08Å1.08Å
CD1HD1sing1.08Å1.08Å
CEHEsing1.08Å1.08Å
CD2HD2sing1.08Å1.08Å
CG2HG2sing1.08Å1.08Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
CG2CD2CE120.4°120.0°
CD2CG2CB120.5°120.0°
CG2CD2HD2119.8°120.0°
CD2CG2HG2119.7°120.0°
CD2CECD1119.3°120.0°
CD2CEHE120.3°120.0°
CECD2HD2119.8°120.0°
CG2CBCA118.9°120.0°
CG2CBCG1118.7°120.0°
CBCG2HG2119.7°120.0°
O1CO2124.6°120.0°
O1CCA116.4°120.1°
CECD1CG1120.6°120.0°
CECD1HD1119.7°120.0°
CD1CEHE120.4°120.0°
O2CCA119.0°120.0°
CO2H1109.5°117.0°
CCACB110.6°109.5°
CCAS1112.7°109.5°
CCAHA106.3°109.4°
CACBCG1122.4°120.0°
CBCAS1114.9°109.5°
CBCAHA107.5°109.5°
CBCG1CD1120.5°120.0°
CBCG1HG1119.8°120.0°
S1CAHA104.1°109.5°
CAS1H2102.0°103.0°
CD1CG1HG1119.8°120.0°
CG1CD1HD1119.7°120.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
CG2CD2CEHD2180.0°179.4°
CD2CG2CBHG2180.0°179.4°
CG2CD2CECD10.4°0.3°
CD2CG2CBCA177.9°179.7°
CD2CG2CBCG10.0°0.6°
CG2CD2CEHE179.6°179.8°
CECD2CG2CB0.3°0.6°
CD2CECD1HE180.0°179.9°
CD2CECD1CG10.1°0.0°
CD2CECD1HD1179.9°179.9°
CECD2CG2HG2179.7°180.0°
CG2CBCAC51.5°59.7°
CG2CBCACG1177.8°179.7°
CG2CBCAS177.5°60.2°
CG2CBCG1CD10.2°0.3°
CG2CBCAHA167.2°179.7°
CG2CBCG1HG1179.7°179.8°
CBCG2CD2HD2179.7°180.0°
O1CO2CA179.6°179.8°
O1CCACB20.7°30.0°
O1CCAS1150.9°90.0°
O1CO2H10.0°0.0°
O1CCAHA95.7°150.0°
CECD1CG1CB0.2°0.0°
CECD1CG1HD1180.0°179.9°
CECD1CG1HG1179.8°179.9°
CD1CECD2HD2179.6°179.7°
O2CCACB159.0°149.7°
O2CCAS128.8°90.3°
O2CCAHA84.7°29.7°
CCACBS1129.0°120.0°
CCACBHA115.7°120.0°
CCACBCG1126.2°120.0°
CCAS1HA114.8°120.0°
CACO2H1179.7°179.7°
CCAS1H2180.0°60.0°
CBCAS1HA117.2°120.0°
CACBCG1CD1177.5°180.0°
CBCAS1H252.0°60.0°
CACBCG1HG12.5°0.0°
CACBCG2HG22.2°0.3°
CG1CBCAS1104.8°120.0°
CBCG1CD1HG1180.0°179.9°
CG1CBCAHA10.5°0.0°
CBCG1CD1HD1179.8°179.9°
CG1CBCG2HG2180.0°180.0°
CG1CD1CEHE179.9°179.9°
HACAS1H265.2°180.0°
HG1CG1CD1HD10.2°0.0°
HD1CD1CEHE0.1°0.0°
HECECD2HD20.4°0.4°
HD2CD2CG2HG20.3°0.6°

227111

PDB entries from 2024-11-06

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