RSQ
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| OP1 | P | doub | 1.48Å | 1.48Å | |
| O5' | P | sing | 1.61Å | 1.59Å | |
| P | OP2 | sing | 1.61Å | 1.48Å | |
| P | OP3 | sing | 1.61Å | 1.61Å | |
| C1' | N1 | sing | 1.47Å | 1.47Å | |
| N1 | C2 | sing | 1.34Å | 1.40Å | |
| N1 | C6 | sing | 1.35Å | 1.37Å | |
| O2 | C2 | doub | 1.22Å | 1.24Å | |
| C2 | N3 | sing | 1.33Å | 1.35Å | |
| N3 | C4 | doub | 1.33Å | 1.33Å | |
| C5 | C4 | sing | 1.47Å | 1.43Å | |
| C4 | N4 | sing | 1.37Å | 1.33Å | |
| N4 | HN4A | sing | 0.97Å | 1.00Å | |
| N4 | HN4 | sing | 0.97Å | 1.00Å | |
| C6 | C5 | doub | 1.39Å | 1.34Å | |
| C5 | C10 | sing | 1.46Å | 1.45Å | |
| H6 | C6 | sing | 1.08Å | 1.08Å | |
| C2' | C1' | sing | 1.54Å | 1.53Å | |
| H1' | C1' | sing | 1.09Å | 1.10Å | |
| C1' | O4' | sing | 1.45Å | 1.42Å | |
| H10 | C10 | sing | 1.08Å | 1.08Å | |
| C10 | O30 | doub | 1.21Å | 1.20Å | |
| O2' | C2' | sing | 1.43Å | 1.42Å | |
| C2' | C3' | sing | 1.54Å | 1.53Å | |
| C2' | H2' | sing | 1.09Å | 1.10Å | |
| HO2' | O2' | sing | 0.97Å | 0.95Å | |
| O3' | C3' | sing | 1.43Å | 1.42Å | |
| C3' | C4' | sing | 1.54Å | 1.52Å | |
| C3' | H3' | sing | 1.09Å | 1.10Å | |
| O3' | HO3' | sing | 0.97Å | 0.95Å | |
| H4' | C4' | sing | 1.09Å | 1.10Å | |
| C4' | O4' | sing | 1.44Å | 1.45Å | |
| C4' | C5' | sing | 1.53Å | 1.51Å | |
| H5' | C5' | sing | 1.09Å | 1.10Å | |
| C5' | H5'A | sing | 1.09Å | 1.10Å | |
| C5' | O5' | sing | 1.43Å | 1.43Å | |
| OP2 | HOP2 | sing | 0.97Å | 0.95Å | |
| OP3 | HOP3 | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| OP1 | P | O5' | 107.4° | 109.5° |
| OP1 | P | OP2 | 119.5° | 109.5° |
| OP1 | P | OP3 | 108.9° | 109.4° |
| O5' | P | OP2 | 108.0° | 109.5° |
| O5' | P | OP3 | 104.2° | 109.5° |
| P | O5' | C5' | 120.8° | 123.0° |
| OP2 | P | OP3 | 107.7° | 109.5° |
| P | OP2 | HOP2 | 109.5° | 113.9° |
| P | OP3 | HOP3 | 109.5° | 114.0° |
| C1' | N1 | C2 | 118.8° | 119.3° |
| C1' | N1 | C6 | 120.9° | 119.4° |
| N1 | C1' | C2' | 113.8° | 110.4° |
| N1 | C1' | H1' | 108.8° | 110.3° |
| N1 | C1' | O4' | 108.4° | 110.3° |
| C2 | N1 | C6 | 120.3° | 121.3° |
| N1 | C2 | O2 | 119.0° | 118.9° |
| N1 | C2 | N3 | 119.2° | 122.4° |
| N1 | C6 | C5 | 121.2° | 118.9° |
| N1 | C6 | H6 | 119.4° | 120.5° |
| O2 | C2 | N3 | 121.8° | 118.8° |
| C2 | N3 | C4 | 120.0° | 120.8° |
| N3 | C4 | C5 | 122.2° | 118.7° |
| N3 | C4 | N4 | 117.5° | 120.6° |
| C5 | C4 | N4 | 120.2° | 120.7° |
| C4 | C5 | C6 | 117.0° | 117.9° |
| C4 | C5 | C10 | 124.3° | 121.1° |
| C4 | N4 | HN4A | 120.0° | 120.0° |
| C4 | N4 | HN4 | 120.0° | 120.0° |
| HN4A | N4 | HN4 | 120.0° | 120.0° |
| C6 | C5 | C10 | 118.7° | 121.0° |
| C5 | C6 | H6 | 119.4° | 120.6° |
| C5 | C10 | H10 | 117.1° | 120.0° |
| C5 | C10 | O30 | 125.9° | 120.0° |
| C2' | C1' | H1' | 108.1° | 110.5° |
| C2' | C1' | O4' | 108.1° | 104.8° |
| C1' | C2' | O2' | 108.2° | 110.5° |
| C1' | C2' | C3' | 101.9° | 104.1° |
| C1' | C2' | H2' | 110.9° | 110.5° |
| H1' | C1' | O4' | 109.6° | 110.4° |
| C1' | O4' | C4' | 109.8° | 105.2° |
| H10 | C10 | O30 | 117.0° | 120.0° |
| O2' | C2' | C3' | 111.6° | 110.5° |
| O2' | C2' | H2' | 112.7° | 110.6° |
| C2' | O2' | HO2' | 109.5° | 114.0° |
| C3' | C2' | H2' | 111.0° | 110.5° |
| C2' | C3' | O3' | 112.1° | 110.5° |
| C2' | C3' | C4' | 102.8° | 104.1° |
| C2' | C3' | H3' | 109.5° | 110.6° |
| O3' | C3' | C4' | 111.6° | 110.5° |
| O3' | C3' | H3' | 111.0° | 110.6° |
| C3' | O3' | HO3' | 109.5° | 114.0° |
| C4' | C3' | H3' | 109.5° | 110.5° |
| C3' | C4' | H4' | 108.8° | 110.4° |
| C3' | C4' | O4' | 104.4° | 104.8° |
| C3' | C4' | C5' | 115.9° | 110.4° |
| H4' | C4' | O4' | 109.9° | 110.4° |
| H4' | C4' | C5' | 109.0° | 110.4° |
| O4' | C4' | C5' | 108.7° | 110.3° |
| C4' | C5' | H5' | 109.2° | 109.5° |
| C4' | C5' | H5'A | 109.2° | 109.5° |
| C4' | C5' | O5' | 110.4° | 109.5° |
| H5' | C5' | H5'A | 109.5° | 109.4° |
| H5' | C5' | O5' | 109.2° | 109.4° |
| H5'A | C5' | O5' | 109.3° | 109.5° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| OP1 | P | O5' | OP2 | 130.2° | 120.0° |
| OP1 | P | O5' | OP3 | 115.4° | 120.0° |
| OP1 | P | OP2 | OP3 | 124.8° | 120.0° |
| OP1 | P | O5' | C5' | 72.5° | 54.9° |
| OP1 | P | OP2 | HOP2 | 0.0° | 60.0° |
| OP1 | P | OP3 | HOP3 | 0.0° | 180.0° |
| O5' | P | OP2 | OP3 | 112.1° | 120.0° |
| P | O5' | C5' | C4' | 138.0° | 180.0° |
| P | O5' | C5' | H5' | 101.9° | 60.0° |
| P | O5' | C5' | H5'A | 17.8° | 59.9° |
| O5' | P | OP2 | HOP2 | 123.2° | 180.0° |
| O5' | P | OP3 | HOP3 | 114.4° | 59.9° |
| OP2 | P | O5' | C5' | 57.7° | 175.0° |
| OP2 | P | OP3 | HOP3 | 131.0° | 60.0° |
| OP3 | P | O5' | C5' | 172.1° | 65.1° |
| OP3 | P | OP2 | HOP2 | 124.8° | 60.0° |
| C1' | N1 | C2 | C6 | 179.6° | 179.7° |
| C1' | N1 | C2 | O2 | 0.1° | 0.3° |
| C1' | N1 | C2 | N3 | 179.9° | 179.7° |
| C1' | N1 | C6 | C5 | 179.4° | 179.7° |
| C1' | N1 | C6 | H6 | 0.6° | 0.2° |
| N1 | C1' | C2' | H1' | 121.0° | 122.3° |
| N1 | C1' | C2' | O4' | 120.4° | 118.8° |
| N1 | C1' | H1' | O4' | 118.3° | 122.2° |
| N1 | C1' | C2' | O2' | 143.8° | 98.6° |
| N1 | C1' | C2' | C3' | 98.5° | 142.8° |
| N1 | C1' | C2' | H2' | 19.6° | 24.1° |
| N1 | C1' | O4' | C4' | 123.3° | 159.4° |
| N1 | C2 | O2 | N3 | 180.0° | 180.0° |
| N1 | C2 | N3 | C4 | 0.3° | 0.0° |
| C2 | N1 | C6 | C5 | 0.2° | 0.0° |
| C2 | N1 | C6 | H6 | 179.9° | 179.9° |
| C2 | N1 | C1' | C2' | 83.4° | 61.8° |
| C2 | N1 | C1' | H1' | 37.1° | 175.8° |
| C2 | N1 | C1' | O4' | 156.3° | 53.6° |
| C6 | N1 | C2 | O2 | 179.7° | 180.0° |
| C6 | N1 | C2 | N3 | 0.3° | 0.0° |
| N1 | C6 | C5 | C4 | 0.6° | 0.0° |
| N1 | C6 | C5 | H6 | 180.0° | 179.9° |
| N1 | C6 | C5 | C10 | 179.1° | 180.0° |
| C6 | N1 | C1' | C2' | 97.0° | 117.9° |
| C6 | N1 | C1' | H1' | 142.5° | 4.5° |
| C6 | N1 | C1' | O4' | 23.3° | 126.8° |
| O2 | C2 | N3 | C4 | 179.7° | 180.0° |
| C2 | N3 | C4 | C5 | 0.1° | 0.0° |
| C2 | N3 | C4 | N4 | 179.9° | 180.0° |
| N3 | C4 | C5 | N4 | 180.0° | 180.0° |
| N3 | C4 | N4 | HN4A | 0.0° | 5.3° |
| N3 | C4 | N4 | HN4 | 180.0° | 174.7° |
| N3 | C4 | C5 | C6 | 0.6° | 0.0° |
| N3 | C4 | C5 | C10 | 179.2° | 180.0° |
| C5 | C4 | N4 | HN4A | 180.0° | 174.7° |
| C5 | C4 | N4 | HN4 | 0.0° | 5.3° |
| C4 | C5 | C6 | C10 | 179.7° | 180.0° |
| C4 | C5 | C6 | H6 | 179.4° | 179.9° |
| C4 | C5 | C10 | H10 | 179.9° | 174.6° |
| C4 | C5 | C10 | O30 | 0.1° | 5.4° |
| C4 | N4 | HN4A | HN4 | 180.0° | 180.0° |
| N4 | C4 | C5 | C6 | 179.4° | 180.0° |
| N4 | C4 | C5 | C10 | 0.8° | 0.0° |
| C6 | C5 | C10 | H10 | 0.4° | 5.4° |
| C6 | C5 | C10 | O30 | 179.6° | 174.6° |
| C10 | C5 | C6 | H6 | 0.8° | 0.1° |
| C5 | C10 | H10 | O30 | 180.0° | 180.0° |
| C2' | C1' | H1' | O4' | 117.7° | 115.4° |
| C1' | C2' | O2' | C3' | 111.3° | 114.7° |
| C1' | C2' | O2' | H2' | 123.1° | 122.6° |
| C1' | C2' | C3' | H2' | 118.1° | 118.6° |
| C1' | C2' | O2' | HO2' | 180.0° | 180.0° |
| C1' | C2' | C3' | O3' | 153.7° | 118.6° |
| C1' | C2' | C3' | C4' | 33.7° | 0.0° |
| C1' | C2' | C3' | H3' | 82.7° | 118.6° |
| C2' | C1' | O4' | C4' | 0.4° | 40.5° |
| H1' | C1' | C2' | O2' | 22.8° | 23.8° |
| H1' | C1' | C2' | C3' | 140.5° | 94.9° |
| H1' | C1' | C2' | H2' | 101.3° | 146.5° |
| H1' | C1' | O4' | C4' | 118.1° | 78.4° |
| O4' | C1' | C2' | O2' | 95.8° | 142.7° |
| O4' | C1' | C2' | C3' | 21.9° | 24.0° |
| O4' | C1' | C2' | H2' | 140.1° | 94.6° |
| C1' | O4' | C4' | C3' | 21.5° | 40.6° |
| C1' | O4' | C4' | H4' | 95.1° | 78.3° |
| C1' | O4' | C4' | C5' | 145.7° | 159.4° |
| O2' | C2' | C3' | H2' | 126.6° | 122.7° |
| O2' | C2' | C3' | O3' | 38.4° | 0.0° |
| O2' | C2' | C3' | C4' | 81.6° | 118.6° |
| O2' | C2' | C3' | H3' | 162.0° | 122.7° |
| C3' | C2' | O2' | HO2' | 68.7° | 65.4° |
| C2' | C3' | O3' | C4' | 114.7° | 114.6° |
| C2' | C3' | O3' | H3' | 122.8° | 122.7° |
| C2' | C3' | C4' | H3' | 116.4° | 118.7° |
| C2' | C3' | O3' | HO3' | 180.0° | 61.5° |
| C2' | C3' | C4' | H4' | 82.8° | 94.8° |
| C2' | C3' | C4' | O4' | 34.5° | 24.0° |
| C2' | C3' | C4' | C5' | 154.0° | 142.8° |
| H2' | C2' | O2' | HO2' | 56.9° | 57.3° |
| H2' | C2' | C3' | O3' | 88.2° | 122.7° |
| H2' | C2' | C3' | C4' | 151.9° | 118.6° |
| H2' | C2' | C3' | H3' | 35.4° | 0.0° |
| O3' | C3' | C4' | H3' | 123.3° | 122.7° |
| O3' | C3' | C4' | H4' | 37.5° | 23.8° |
| O3' | C3' | C4' | O4' | 154.8° | 142.7° |
| O3' | C3' | C4' | C5' | 85.8° | 98.6° |
| C4' | C3' | O3' | HO3' | 65.2° | 176.1° |
| C3' | C4' | H4' | O4' | 113.8° | 115.4° |
| C3' | C4' | H4' | C5' | 127.2° | 122.3° |
| C3' | C4' | O4' | C5' | 124.2° | 118.8° |
| C3' | C4' | C5' | H5' | 148.3° | 55.0° |
| C3' | C4' | C5' | H5'A | 92.0° | 65.0° |
| C3' | C4' | C5' | O5' | 28.2° | 175.0° |
| H3' | C3' | O3' | HO3' | 57.2° | 61.3° |
| H3' | C3' | C4' | H4' | 160.8° | 146.5° |
| H3' | C3' | C4' | O4' | 81.9° | 94.7° |
| H3' | C3' | C4' | C5' | 37.5° | 24.1° |
| H4' | C4' | O4' | C5' | 119.2° | 122.3° |
| H4' | C4' | C5' | H5' | 88.5° | 67.3° |
| H4' | C4' | C5' | H5'A | 31.2° | 172.7° |
| H4' | C4' | C5' | O5' | 151.3° | 52.7° |
| O4' | C4' | C5' | H5' | 31.2° | 170.4° |
| O4' | C4' | C5' | H5'A | 150.9° | 50.4° |
| O4' | C4' | C5' | O5' | 88.9° | 69.7° |
| C4' | C5' | H5' | H5'A | 119.6° | 120.0° |
| C4' | C5' | H5' | O5' | 120.8° | 120.0° |
| C4' | C5' | H5'A | O5' | 120.8° | 120.1° |
| H5' | C5' | H5'A | O5' | 119.6° | 119.9° |
