RSP

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
OP1	P	doub	1.48Å	1.49Å
OP3	P	sing	1.61Å	1.61Å
P	OP2	sing	1.61Å	1.49Å
P	O5'	sing	1.61Å	1.59Å
C6	N1	sing	1.36Å	1.37Å
N1	C2	sing	1.35Å	1.40Å
N1	C1'	sing	1.47Å	1.47Å
N3	C2	sing	1.33Å	1.35Å
C2	S2	doub	1.71Å	1.68Å
C4	N3	doub	1.33Å	1.34Å
N4	C4	sing	1.38Å	1.33Å
C5	C4	sing	1.41Å	1.43Å
HN4	N4	sing	0.97Å	1.00Å
N4	HN4A	sing	0.97Å	1.00Å
H5	C5	sing	1.08Å	1.08Å
C5	C6	doub	1.35Å	1.34Å
H6	C6	sing	1.08Å	1.08Å
O4'	C1'	sing	1.44Å	1.42Å
C1'	H1'	sing	1.09Å	1.10Å
C1'	C2'	sing	1.55Å	1.53Å
C3'	C2'	sing	1.55Å	1.53Å
C2'	H2'	sing	1.09Å	1.10Å
C2'	O2'	sing	1.43Å	1.42Å
O2'	HO2'	sing	0.97Å	0.95Å
C4'	C3'	sing	1.54Å	1.52Å
H3'	C3'	sing	1.09Å	1.10Å
C3'	O3'	sing	1.43Å	1.43Å
O3'	HO3'	sing	0.97Å	0.95Å
C5'	C4'	sing	1.53Å	1.51Å
O4'	C4'	sing	1.44Å	1.45Å
C4'	H4'	sing	1.09Å	1.10Å
O5'	C5'	sing	1.43Å	1.43Å
H5'A	C5'	sing	1.09Å	1.10Å
C5'	H5'	sing	1.09Å	1.10Å
OP2	HOP2	sing	0.97Å	0.95Å
OP3	HOP3	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
OP1	P	OP3	107.6°	109.4°
OP1	P	OP2	119.5°	109.5°
OP1	P	O5'	107.9°	109.4°
OP3	P	OP2	108.2°	109.5°
OP3	P	O5'	104.2°	109.5°
P	OP3	HOP3	109.5°	114.0°
OP2	P	O5'	108.3°	109.5°
P	OP2	HOP2	109.5°	114.0°
P	O5'	C5'	121.1°	123.0°
C6	N1	C2	120.2°	120.4°
C6	N1	C1'	120.9°	119.8°
N1	C6	C5	121.2°	119.3°
N1	C6	H6	119.4°	120.4°
C2	N1	C1'	118.9°	119.8°
N1	C2	N3	119.2°	121.1°
N1	C2	S2	118.9°	119.5°
N1	C1'	O4'	108.2°	110.6°
N1	C1'	H1'	106.7°	110.5°
N1	C1'	C2'	114.3°	110.6°
N3	C2	S2	121.8°	119.5°
C2	N3	C4	120.0°	120.7°
N3	C4	N4	117.9°	120.2°
N3	C4	C5	121.9°	119.6°
N4	C4	C5	120.2°	120.2°
C4	N4	HN4	120.0°	120.0°
C4	N4	HN4A	120.0°	120.0°
C4	C5	H5	121.3°	120.5°
C4	C5	C6	117.5°	118.9°
HN4	N4	HN4A	120.1°	120.0°
H5	C5	C6	121.3°	120.5°
C5	C6	H6	119.4°	120.3°
O4'	C1'	H1'	113.0°	110.7°
O4'	C1'	C2'	108.1°	103.6°
C1'	O4'	C4'	109.9°	106.9°
H1'	C1'	C2'	106.7°	110.6°
C1'	C2'	C3'	101.9°	102.1°
C1'	C2'	H2'	115.9°	110.9°
C1'	C2'	O2'	108.0°	110.9°
C3'	C2'	H2'	112.5°	110.9°
C3'	C2'	O2'	111.6°	110.9°
C2'	C3'	C4'	103.0°	104.2°
C2'	C3'	H3'	112.1°	110.5°
C2'	C3'	O3'	112.6°	110.5°
H2'	C2'	O2'	106.9°	110.8°
C2'	O2'	HO2'	109.5°	114.0°
C4'	C3'	H3'	113.9°	110.6°
C4'	C3'	O3'	110.8°	110.5°
C3'	C4'	C5'	115.3°	109.9°
C3'	C4'	O4'	104.9°	107.4°
C3'	C4'	H4'	108.6°	109.9°
H3'	C3'	O3'	104.6°	110.5°
C3'	O3'	HO3'	109.5°	114.0°
C5'	C4'	O4'	108.8°	110.1°
C5'	C4'	H4'	104.6°	109.9°
C4'	C5'	O5'	110.1°	109.4°
C4'	C5'	H5'A	109.2°	109.5°
C4'	C5'	H5'	109.2°	109.5°
O4'	C4'	H4'	115.0°	109.7°
O5'	C5'	H5'A	109.3°	109.4°
O5'	C5'	H5'	109.3°	109.5°
H5'A	C5'	H5'	109.7°	109.5°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
OP1	P	OP3	OP2	130.5°	120.0°
OP1	P	OP3	O5'	114.4°	120.0°
OP1	P	OP2	O5'	124.1°	120.0°
OP1	P	O5'	C5'	178.8°	55.0°
OP1	P	OP2	HOP2	0.0°	180.0°
OP1	P	OP3	HOP3	0.0°	60.1°
OP3	P	OP2	O5'	112.4°	120.0°
OP3	P	O5'	C5'	67.0°	175.0°
OP3	P	OP2	HOP2	123.6°	60.0°
OP2	P	O5'	C5'	48.1°	65.0°
OP2	P	OP3	HOP3	130.5°	59.9°
P	O5'	C5'	C4'	160.9°	179.9°
P	O5'	C5'	H5'A	40.9°	60.0°
P	O5'	C5'	H5'	79.1°	60.0°
O5'	P	OP2	HOP2	124.0°	60.0°
O5'	P	OP3	HOP3	114.4°	180.0°
C6	N1	C2	C1'	179.5°	179.7°
C6	N1	C2	N3	0.8°	0.2°
C6	N1	C2	S2	179.2°	179.7°
N1	C6	C5	C4	0.1°	0.6°
N1	C6	C5	H5	180.0°	179.7°
N1	C6	C5	H6	180.0°	179.4°
C6	N1	C1'	O4'	24.2°	128.9°
C6	N1	C1'	H1'	146.0°	5.9°
C6	N1	C1'	C2'	96.3°	116.9°
N1	C2	N3	S2	180.0°	179.9°
N1	C2	N3	C4	0.2°	0.0°
C2	N1	C6	C5	0.7°	0.5°
C2	N1	C6	H6	179.3°	179.9°
C2	N1	C1'	O4'	155.3°	51.4°
C2	N1	C1'	H1'	33.5°	174.3°
C2	N1	C1'	C2'	84.2°	62.8°
C1'	N1	C2	N3	178.7°	180.0°
C1'	N1	C2	S2	1.3°	0.1°
C1'	N1	C6	C5	178.7°	179.7°
C1'	N1	C6	H6	1.3°	0.3°
N1	C1'	O4'	H1'	117.8°	122.9°
N1	C1'	O4'	C2'	124.3°	118.6°
N1	C1'	H1'	C2'	122.6°	122.8°
N1	C1'	C2'	C3'	97.8°	155.5°
N1	C1'	C2'	H2'	24.7°	37.3°
N1	C1'	C2'	O2'	144.5°	86.2°
N1	C1'	O4'	C4'	121.8°	158.4°
C2	N3	C4	N4	179.4°	180.0°
C2	N3	C4	C5	0.5°	0.0°
S2	C2	N3	C4	179.8°	180.0°
N3	C4	N4	C5	179.9°	180.0°
N3	C4	N4	HN4	0.0°	180.0°
N3	C4	N4	HN4A	180.0°	0.0°
N3	C4	C5	H5	179.4°	180.0°
N3	C4	C5	C6	0.6°	0.3°
C4	N4	HN4	HN4A	180.0°	180.0°
N4	C4	C5	H5	0.7°	0.0°
N4	C4	C5	C6	179.3°	179.7°
C5	C4	N4	HN4	179.9°	0.0°
C5	C4	N4	HN4A	0.1°	180.0°
C4	C5	H5	C6	180.0°	179.7°
C4	C5	C6	H6	180.0°	180.0°
H5	C5	C6	H6	0.0°	0.3°
O4'	C1'	H1'	C2'	118.7°	114.2°
O4'	C1'	C2'	C3'	22.8°	37.0°
O4'	C1'	C2'	H2'	145.3°	81.2°
O4'	C1'	C2'	O2'	94.9°	155.2°
C1'	O4'	C4'	C3'	19.2°	26.3°
C1'	O4'	C4'	C5'	143.0°	145.9°
C1'	O4'	C4'	H4'	100.0°	93.1°
H1'	C1'	C2'	C3'	144.6°	81.7°
H1'	C1'	C2'	H2'	92.9°	160.1°
H1'	C1'	C2'	O2'	26.9°	36.6°
H1'	C1'	O4'	C4'	120.3°	78.7°
C1'	C2'	C3'	H2'	124.8°	118.2°
C1'	C2'	C3'	O2'	115.1°	118.2°
C1'	C2'	H2'	O2'	120.4°	123.6°
C1'	C2'	O2'	HO2'	180.0°	180.0°
C1'	C2'	C3'	C4'	33.2°	20.9°
C1'	C2'	C3'	H3'	89.7°	139.7°
C1'	C2'	C3'	O3'	152.6°	97.8°
C2'	C1'	O4'	C4'	2.5°	39.9°
C3'	C2'	H2'	O2'	122.9°	123.7°
C3'	C2'	O2'	HO2'	68.7°	67.3°
C2'	C3'	C4'	H3'	121.7°	118.7°
C2'	C3'	C4'	O3'	120.7°	118.7°
C2'	C3'	H3'	O3'	122.3°	122.5°
C2'	C3'	O3'	HO3'	180.0°	61.5°
C2'	C3'	C4'	C5'	152.5°	121.6°
C2'	C3'	C4'	O4'	32.8°	1.9°
C2'	C3'	C4'	H4'	90.6°	117.4°
H2'	C2'	O2'	HO2'	54.7°	56.4°
H2'	C2'	C3'	C4'	158.0°	97.3°
H2'	C2'	C3'	H3'	35.0°	21.5°
H2'	C2'	C3'	O3'	82.6°	144.0°
O2'	C2'	C3'	C4'	81.8°	139.1°
O2'	C2'	C3'	H3'	155.2°	102.1°
O2'	C2'	C3'	O3'	37.6°	20.4°
C4'	C3'	H3'	O3'	121.1°	122.7°
C4'	C3'	O3'	HO3'	65.2°	176.2°
C3'	C4'	C5'	O4'	117.4°	118.1°
C3'	C4'	C5'	H4'	119.2°	121.0°
C3'	C4'	O4'	H4'	119.2°	119.4°
C3'	C4'	C5'	O5'	66.6°	175.0°
C3'	C4'	C5'	H5'A	173.4°	65.1°
C3'	C4'	C5'	H5'	53.4°	55.0°
H3'	C3'	O3'	HO3'	58.0°	61.1°
H3'	C3'	C4'	C5'	30.8°	2.9°
H3'	C3'	C4'	O4'	88.9°	116.8°
H3'	C3'	C4'	H4'	147.7°	123.9°
O3'	C3'	C4'	C5'	86.9°	119.7°
O3'	C3'	C4'	O4'	153.5°	120.5°
O3'	C3'	C4'	H4'	30.1°	1.3°
C5'	C4'	O4'	H4'	117.0°	121.0°
C4'	C5'	O5'	H5'A	120.0°	120.0°
C4'	C5'	O5'	H5'	120.0°	120.0°
C4'	C5'	H5'A	H5'	119.7°	120.1°
O4'	C4'	C5'	O5'	50.8°	66.9°
O4'	C4'	C5'	H5'A	69.2°	53.0°
O4'	C4'	C5'	H5'	170.8°	173.0°
H4'	C4'	C5'	O5'	174.2°	54.0°
H4'	C4'	C5'	H5'A	54.2°	174.0°
H4'	C4'	C5'	H5'	65.8°	66.0°
O5'	C5'	H5'A	H5'	119.7°	120.0°

Definition date:	2010-01-11
Last modified:	2019-12-05
Release status:	REL
Processing site:	RCSB
Derived from:	2KRV