RSE
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| OC1 | PC | doub | 1.48Å | 1.51Å | |
| OB | PB | doub | 1.48Å | 1.47Å | |
| O4' | C1' | sing | 1.44Å | 1.43Å | |
| O4' | C4' | sing | 1.44Å | 1.42Å | |
| SEB | PB | sing | 2.27Å | 2.09Å | |
| PC | OC2 | sing | 1.61Å | 1.51Å | |
| PC | O5' | sing | 1.61Å | 1.61Å | |
| PC | OBC | sing | 1.61Å | 1.61Å | |
| PB | OBC | sing | 1.61Å | 1.60Å | |
| PB | OAB | sing | 1.61Å | 1.61Å | |
| C1' | N9 | sing | 1.47Å | 1.47Å | |
| C1' | C2' | sing | 1.54Å | 1.52Å | |
| C8 | N9 | sing | 1.36Å | 1.36Å | Aromatic |
| C8 | N7 | doub | 1.30Å | 1.37Å | Aromatic |
| N9 | C4 | sing | 1.37Å | 1.34Å | Aromatic |
| CM7 | N7 | sing | 1.47Å | 1.49Å | |
| C5' | O5' | sing | 1.43Å | 1.42Å | |
| C5' | C4' | sing | 1.53Å | 1.52Å | |
| N7 | C5 | sing | 1.36Å | 1.35Å | Aromatic |
| C4' | C3' | sing | 1.55Å | 1.51Å | |
| C4 | C5 | doub | 1.40Å | 1.37Å | Aromatic |
| C4 | N3 | sing | 1.34Å | 1.34Å | |
| C5 | C6 | sing | 1.41Å | 1.39Å | |
| N3 | C2 | doub | 1.31Å | 1.35Å | |
| C6 | O6 | doub | 1.22Å | 1.35Å | |
| C6 | N1 | sing | 1.35Å | 1.35Å | |
| C2 | N1 | sing | 1.36Å | 1.36Å | |
| C2 | N2 | sing | 1.37Å | 1.34Å | |
| OAB | PA | sing | 1.61Å | 1.61Å | |
| C2' | O2' | sing | 1.43Å | 1.43Å | |
| C2' | C3' | sing | 1.54Å | 1.50Å | |
| CM2 | O2' | sing | 1.43Å | 1.43Å | |
| C3' | O3' | sing | 1.43Å | 1.42Å | |
| PA | OA1 | doub | 1.48Å | 1.51Å | |
| PA | OA2 | sing | 1.61Å | 1.51Å | |
| PA | OA3 | sing | 1.61Å | 1.61Å | |
| OC2 | H1 | sing | 0.97Å | 0.95Å | |
| SEB | H2 | sing | 1.56Å | 1.46Å | |
| OA2 | H3 | sing | 0.97Å | 0.95Å | |
| OA3 | H4 | sing | 0.97Å | 0.95Å | |
| C5' | H5 | sing | 1.09Å | 1.10Å | |
| C5' | H6 | sing | 1.09Å | 1.10Å | |
| C4' | H7 | sing | 1.09Å | 1.10Å | |
| C3' | H8 | sing | 1.09Å | 1.10Å | |
| O3' | H9 | sing | 0.97Å | 0.95Å | |
| C2' | H10 | sing | 1.09Å | 1.10Å | |
| CM2 | H11 | sing | 1.09Å | 1.10Å | |
| CM2 | H12 | sing | 1.09Å | 1.10Å | |
| CM2 | H13 | sing | 1.09Å | 1.10Å | |
| C1' | H14 | sing | 1.09Å | 1.10Å | |
| N2 | H15 | sing | 0.97Å | 1.00Å | |
| N2 | H16 | sing | 0.97Å | 1.00Å | |
| N1 | H17 | sing | 0.97Å | 1.00Å | |
| CM7 | H18 | sing | 1.09Å | 1.10Å | |
| CM7 | H19 | sing | 1.09Å | 1.10Å | |
| CM7 | H20 | sing | 1.09Å | 1.10Å | |
| C8 | H21 | sing | 1.08Å | 1.08Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| OC1 | PC | OC2 | 119.7° | 109.5° |
| OC1 | PC | O5' | 109.5° | 109.5° |
| OC1 | PC | OBC | 112.3° | 109.5° |
| OB | PB | SEB | 109.9° | 109.5° |
| OB | PB | OBC | 110.1° | 109.5° |
| OB | PB | OAB | 108.2° | 109.4° |
| C1' | O4' | C4' | 109.4° | 105.3° |
| O4' | C1' | N9 | 108.7° | 110.4° |
| O4' | C1' | C2' | 106.6° | 104.8° |
| O4' | C1' | H14 | 112.0° | 110.5° |
| O4' | C4' | C5' | 108.8° | 110.4° |
| O4' | C4' | C3' | 104.3° | 104.8° |
| O4' | C4' | H7 | 111.2° | 110.5° |
| SEB | PB | OBC | 113.1° | 109.5° |
| SEB | PB | OAB | 111.6° | 109.5° |
| PB | SEB | H2 | 109.5° | 101.0° |
| OC2 | PC | O5' | 106.7° | 109.4° |
| OC2 | PC | OBC | 108.1° | 109.5° |
| PC | OC2 | H1 | 109.5° | 114.0° |
| O5' | PC | OBC | 98.2° | 109.5° |
| PC | O5' | C5' | 119.1° | 123.0° |
| PC | OBC | PB | 125.7° | 134.0° |
| OBC | PB | OAB | 103.7° | 109.5° |
| PB | OAB | PA | 127.8° | 134.0° |
| N9 | C1' | C2' | 107.4° | 110.4° |
| C1' | N9 | C8 | 129.2° | 126.3° |
| C1' | N9 | C4 | 122.2° | 126.2° |
| N9 | C1' | H14 | 111.3° | 110.4° |
| C1' | C2' | O2' | 110.3° | 110.5° |
| C1' | C2' | C3' | 102.1° | 104.1° |
| C1' | C2' | H10 | 111.2° | 110.6° |
| C2' | C1' | H14 | 110.7° | 110.4° |
| N9 | C8 | N7 | 108.2° | 109.8° |
| C8 | N9 | C4 | 108.6° | 107.5° |
| N9 | C8 | H21 | 125.9° | 125.1° |
| C8 | N7 | CM7 | 124.1° | 125.4° |
| C8 | N7 | C5 | 106.7° | 109.3° |
| N7 | C8 | H21 | 125.9° | 125.1° |
| N9 | C4 | C5 | 107.3° | 106.0° |
| N9 | C4 | N3 | 131.5° | 134.2° |
| CM7 | N7 | C5 | 129.2° | 125.3° |
| N7 | CM7 | H18 | 109.5° | 109.5° |
| N7 | CM7 | H19 | 109.5° | 109.4° |
| N7 | CM7 | H20 | 109.5° | 109.5° |
| O5' | C5' | C4' | 106.4° | 109.5° |
| O5' | C5' | H5 | 110.2° | 109.5° |
| O5' | C5' | H6 | 110.2° | 109.4° |
| C5' | C4' | C3' | 112.9° | 110.3° |
| C4' | C5' | H5 | 110.2° | 109.5° |
| C4' | C5' | H6 | 110.2° | 109.5° |
| C5' | C4' | H7 | 109.7° | 110.3° |
| N7 | C5 | C4 | 109.2° | 107.3° |
| N7 | C5 | C6 | 131.2° | 134.2° |
| C4' | C3' | C2' | 101.3° | 104.0° |
| C4' | C3' | O3' | 109.4° | 110.5° |
| C3' | C4' | H7 | 109.8° | 110.4° |
| C4' | C3' | H8 | 110.8° | 110.5° |
| C5 | C4 | N3 | 121.2° | 119.7° |
| C4 | C5 | C6 | 119.6° | 118.5° |
| C4 | N3 | C2 | 119.2° | 121.2° |
| C5 | C6 | O6 | 123.2° | 120.8° |
| C5 | C6 | N1 | 118.1° | 118.4° |
| N3 | C2 | N1 | 120.7° | 121.8° |
| N3 | C2 | N2 | 119.3° | 119.1° |
| O6 | C6 | N1 | 118.7° | 120.8° |
| C6 | N1 | C2 | 121.2° | 120.4° |
| C6 | N1 | H17 | 119.4° | 119.8° |
| N1 | C2 | N2 | 120.0° | 119.1° |
| C2 | N1 | H17 | 119.4° | 119.8° |
| C2 | N2 | H15 | 120.0° | 120.0° |
| C2 | N2 | H16 | 120.0° | 120.0° |
| OAB | PA | OA1 | 107.1° | 109.5° |
| OAB | PA | OA2 | 102.3° | 109.5° |
| OAB | PA | OA3 | 102.8° | 109.5° |
| O2' | C2' | C3' | 108.8° | 110.5° |
| C2' | O2' | CM2 | 112.3° | 114.0° |
| O2' | C2' | H10 | 112.6° | 110.4° |
| C2' | C3' | O3' | 111.6° | 110.5° |
| C2' | C3' | H8 | 111.0° | 110.7° |
| C3' | C2' | H10 | 111.3° | 110.5° |
| O2' | CM2 | H11 | 109.5° | 109.5° |
| O2' | CM2 | H12 | 109.4° | 109.5° |
| O2' | CM2 | H13 | 109.4° | 109.5° |
| O3' | C3' | H8 | 112.2° | 110.5° |
| C3' | O3' | H9 | 109.5° | 114.0° |
| OA1 | PA | OA2 | 113.8° | 109.5° |
| OA1 | PA | OA3 | 114.9° | 109.5° |
| OA2 | PA | OA3 | 114.2° | 109.5° |
| PA | OA2 | H3 | 109.5° | 114.0° |
| PA | OA3 | H4 | 109.5° | 114.0° |
| H5 | C5' | H6 | 109.5° | 109.5° |
| H11 | CM2 | H12 | 109.5° | 109.4° |
| H11 | CM2 | H13 | 109.5° | 109.5° |
| H12 | CM2 | H13 | 109.5° | 109.5° |
| H15 | N2 | H16 | 120.0° | 120.0° |
| H18 | CM7 | H19 | 109.4° | 109.5° |
| H18 | CM7 | H20 | 109.5° | 109.5° |
| H19 | CM7 | H20 | 109.5° | 109.5° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| OC1 | PC | OC2 | O5' | 125.0° | 120.0° |
| OC1 | PC | OC2 | OBC | 130.2° | 120.1° |
| OC1 | PC | O5' | OBC | 117.2° | 120.1° |
| OC1 | PC | OBC | PB | 31.5° | 40.0° |
| OC1 | PC | O5' | C5' | 55.8° | 54.9° |
| OC1 | PC | OC2 | H1 | 0.0° | 179.9° |
| OB | PB | SEB | OBC | 123.5° | 120.0° |
| OB | PB | SEB | OAB | 120.0° | 120.0° |
| OB | PB | OBC | PC | 54.9° | 60.0° |
| OB | PB | OBC | OAB | 115.6° | 120.0° |
| OB | PB | OAB | PA | 159.0° | 60.0° |
| OB | PB | SEB | H2 | 180.0° | 180.0° |
| O4' | C1' | N9 | C2' | 114.9° | 115.3° |
| O4' | C1' | N9 | H14 | 123.8° | 122.4° |
| O4' | C1' | C2' | H14 | 122.1° | 118.9° |
| O4' | C1' | N9 | C8 | 15.8° | 20.0° |
| O4' | C1' | N9 | C4 | 167.5° | 159.6° |
| C1' | O4' | C4' | C5' | 146.5° | 159.3° |
| C1' | O4' | C4' | C3' | 25.7° | 40.5° |
| O4' | C1' | C2' | O2' | 92.8° | 142.7° |
| O4' | C1' | C2' | C3' | 22.7° | 24.0° |
| C1' | O4' | C4' | H7 | 92.6° | 78.4° |
| O4' | C1' | C2' | H10 | 141.6° | 94.8° |
| C4' | O4' | C1' | N9 | 117.2° | 159.3° |
| C4' | O4' | C1' | C2' | 1.8° | 40.5° |
| O4' | C4' | C5' | O5' | 57.2° | 69.6° |
| O4' | C4' | C5' | C3' | 115.3° | 115.4° |
| O4' | C4' | C5' | H7 | 121.8° | 122.4° |
| O4' | C4' | C3' | H7 | 119.2° | 119.0° |
| O4' | C4' | C3' | C2' | 39.1° | 24.0° |
| O4' | C4' | C3' | O3' | 157.0° | 142.6° |
| O4' | C4' | C5' | H5 | 176.7° | 50.4° |
| O4' | C4' | C5' | H6 | 62.4° | 170.4° |
| O4' | C4' | C3' | H8 | 78.7° | 94.8° |
| C4' | O4' | C1' | H14 | 119.4° | 78.3° |
| SEB | PB | OBC | PC | 68.4° | 60.0° |
| SEB | PB | OBC | OAB | 121.0° | 120.0° |
| SEB | PB | OAB | PA | 80.0° | 60.0° |
| OC2 | PC | O5' | OBC | 111.8° | 120.0° |
| OC2 | PC | OBC | PB | 102.7° | 80.0° |
| OC2 | PC | O5' | C5' | 173.2° | 65.1° |
| O5' | PC | OBC | PB | 146.7° | 160.0° |
| PC | O5' | C5' | C4' | 156.5° | 180.0° |
| O5' | PC | OC2 | H1 | 125.0° | 60.0° |
| PC | O5' | C5' | H5 | 84.0° | 59.9° |
| PC | O5' | C5' | H6 | 37.0° | 60.0° |
| PC | OBC | PB | OAB | 170.5° | 180.0° |
| OBC | PC | O5' | C5' | 61.4° | 175.0° |
| OBC | PC | OC2 | H1 | 130.2° | 60.0° |
| OBC | PB | OAB | PA | 42.1° | 180.0° |
| OBC | PB | SEB | H2 | 56.4° | 60.0° |
| PB | OAB | PA | OA1 | 5.2° | 45.0° |
| PB | OAB | PA | OA2 | 114.7° | 75.0° |
| PB | OAB | PA | OA3 | 126.6° | 165.0° |
| OAB | PB | SEB | H2 | 60.0° | 60.0° |
| N9 | C1' | C2' | H14 | 121.6° | 122.3° |
| C1' | N9 | C8 | C4 | 177.1° | 179.7° |
| C1' | N9 | C8 | N7 | 178.8° | 179.8° |
| C1' | N9 | C4 | C5 | 178.4° | 180.0° |
| C1' | N9 | C4 | N3 | 2.2° | 0.0° |
| N9 | C1' | C2' | O2' | 150.9° | 98.5° |
| N9 | C1' | C2' | C3' | 93.6° | 142.8° |
| N9 | C1' | C2' | H10 | 25.3° | 24.1° |
| C1' | N9 | C8 | H21 | 1.2° | 0.1° |
| C2' | C1' | N9 | C8 | 99.2° | 95.3° |
| C2' | C1' | N9 | C4 | 77.6° | 85.0° |
| C1' | C2' | C3' | C4' | 36.9° | 0.0° |
| C1' | C2' | O2' | C3' | 111.3° | 114.7° |
| C1' | C2' | O2' | H10 | 124.8° | 122.7° |
| C1' | C2' | C3' | H10 | 118.7° | 118.8° |
| C1' | C2' | O2' | CM2 | 79.4° | 153.9° |
| C1' | C2' | C3' | O3' | 153.2° | 118.6° |
| C1' | C2' | C3' | H8 | 80.9° | 118.7° |
| N9 | C8 | N7 | H21 | 180.0° | 179.7° |
| N9 | C8 | N7 | CM7 | 179.2° | 179.9° |
| N9 | C8 | N7 | C5 | 1.7° | 0.5° |
| C8 | N9 | C4 | C5 | 1.0° | 0.3° |
| C8 | N9 | C4 | N3 | 179.6° | 179.7° |
| C8 | N9 | C1' | H14 | 139.6° | 142.4° |
| N7 | C8 | N9 | C4 | 1.7° | 0.5° |
| C8 | N7 | CM7 | C5 | 178.9° | 179.6° |
| C8 | N7 | C5 | C4 | 1.1° | 0.3° |
| C8 | N7 | C5 | C6 | 179.0° | 179.7° |
| C8 | N7 | CM7 | H18 | 180.0° | 89.6° |
| C8 | N7 | CM7 | H19 | 60.0° | 30.3° |
| C8 | N7 | CM7 | H20 | 60.0° | 150.4° |
| N9 | C4 | C5 | N7 | 0.0° | 0.0° |
| N9 | C4 | C5 | N3 | 179.5° | 179.9° |
| N9 | C4 | C5 | C6 | 178.3° | 180.0° |
| N9 | C4 | N3 | C2 | 179.1° | 180.0° |
| C4 | N9 | C1' | H14 | 43.7° | 37.2° |
| C4 | N9 | C8 | H21 | 178.3° | 179.8° |
| CM7 | N7 | C5 | C4 | 179.9° | 180.0° |
| CM7 | N7 | C5 | C6 | 2.0° | 0.0° |
| N7 | CM7 | H18 | H19 | 120.0° | 119.9° |
| N7 | CM7 | H18 | H20 | 120.0° | 120.0° |
| N7 | CM7 | H19 | H20 | 120.0° | 120.0° |
| CM7 | N7 | C8 | H21 | 0.8° | 0.1° |
| O5' | C5' | C4' | H5 | 119.5° | 120.0° |
| O5' | C5' | C4' | H6 | 119.5° | 119.9° |
| O5' | C5' | C4' | C3' | 58.2° | 175.0° |
| O5' | C5' | H5 | H6 | 121.4° | 119.9° |
| O5' | C5' | C4' | H7 | 179.0° | 52.7° |
| C5' | C4' | C3' | H7 | 122.8° | 122.2° |
| C5' | C4' | C3' | C2' | 157.1° | 142.8° |
| C5' | C4' | C3' | O3' | 85.0° | 98.6° |
| C4' | C5' | H5 | H6 | 121.4° | 120.1° |
| C5' | C4' | C3' | H8 | 39.2° | 24.0° |
| N7 | C5 | C4 | C6 | 178.2° | 180.0° |
| N7 | C5 | C4 | N3 | 179.4° | 180.0° |
| N7 | C5 | C6 | O6 | 2.4° | 0.0° |
| N7 | C5 | C6 | N1 | 179.4° | 180.0° |
| C5 | N7 | CM7 | H18 | 1.2° | 90.0° |
| C5 | N7 | CM7 | H19 | 121.1° | 150.0° |
| C5 | N7 | CM7 | H20 | 118.9° | 30.0° |
| C5 | N7 | C8 | H21 | 178.3° | 179.8° |
| C4' | C3' | C2' | O2' | 79.8° | 118.7° |
| C4' | C3' | C2' | O3' | 116.3° | 118.6° |
| C4' | C3' | C2' | H8 | 117.7° | 118.7° |
| C4' | C3' | O3' | H8 | 123.5° | 122.6° |
| C3' | C4' | C5' | H5 | 61.4° | 65.0° |
| C3' | C4' | C5' | H6 | 177.7° | 55.0° |
| C4' | C3' | O3' | H9 | 180.0° | 61.5° |
| C4' | C3' | C2' | H10 | 155.6° | 118.8° |
| C5 | C4 | N3 | C2 | 0.2° | 0.1° |
| C4 | C5 | C6 | O6 | 179.8° | 180.0° |
| C4 | C5 | C6 | N1 | 1.6° | 0.0° |
| N3 | C4 | C5 | C6 | 1.2° | 0.0° |
| C4 | N3 | C2 | N1 | 0.3° | 0.1° |
| C4 | N3 | C2 | N2 | 179.5° | 180.0° |
| C5 | C6 | O6 | N1 | 178.2° | 180.0° |
| C5 | C6 | N1 | C2 | 1.1° | 0.0° |
| C5 | C6 | N1 | H17 | 178.9° | 179.9° |
| N3 | C2 | N1 | C6 | 0.1° | 0.0° |
| N3 | C2 | N1 | N2 | 179.8° | 180.0° |
| N3 | C2 | N2 | H15 | 0.0° | 0.0° |
| N3 | C2 | N2 | H16 | 180.0° | 180.0° |
| N3 | C2 | N1 | H17 | 179.9° | 179.9° |
| O6 | C6 | N1 | C2 | 179.4° | 180.0° |
| O6 | C6 | N1 | H17 | 0.6° | 0.1° |
| C6 | N1 | C2 | H17 | 180.0° | 179.9° |
| C6 | N1 | C2 | N2 | 180.0° | 180.0° |
| N1 | C2 | N2 | H15 | 179.9° | 180.0° |
| N1 | C2 | N2 | H16 | 0.2° | 0.0° |
| C2 | N2 | H15 | H16 | 180.0° | 180.0° |
| N2 | C2 | N1 | H17 | 0.0° | 0.1° |
| OAB | PA | OA1 | OA2 | 112.3° | 120.0° |
| OAB | PA | OA1 | OA3 | 113.4° | 120.0° |
| OAB | PA | OA2 | OA3 | 110.3° | 120.0° |
| OAB | PA | OA2 | H3 | 115.2° | 60.0° |
| OAB | PA | OA3 | H4 | 116.0° | 180.0° |
| O2' | C2' | C3' | H10 | 124.6° | 122.5° |
| O2' | C2' | C3' | O3' | 36.5° | 0.1° |
| O2' | C2' | C3' | H8 | 162.5° | 122.6° |
| C2' | O2' | CM2 | H11 | 180.0° | 180.0° |
| C2' | O2' | CM2 | H12 | 60.0° | 60.1° |
| C2' | O2' | CM2 | H13 | 60.0° | 60.0° |
| O2' | C2' | C1' | H14 | 29.3° | 23.7° |
| C3' | C2' | O2' | CM2 | 169.3° | 91.4° |
| C2' | C3' | O3' | H8 | 125.2° | 122.8° |
| C2' | C3' | C4' | H7 | 80.2° | 95.0° |
| C2' | C3' | O3' | H9 | 68.7° | 176.1° |
| C3' | C2' | C1' | H14 | 144.8° | 95.0° |
| CM2 | O2' | C2' | H10 | 45.4° | 31.2° |
| O2' | CM2 | H11 | H12 | 120.0° | 120.0° |
| O2' | CM2 | H11 | H13 | 120.0° | 120.0° |
| O2' | CM2 | H12 | H13 | 120.0° | 120.1° |
| O3' | C3' | C4' | H7 | 37.8° | 23.6° |
| O3' | C3' | C2' | H10 | 88.1° | 122.6° |
| OA1 | PA | OA2 | OA3 | 134.6° | 120.0° |
| OA1 | PA | OA2 | H3 | 0.0° | 180.0° |
| OA1 | PA | OA3 | H4 | 0.0° | 60.0° |
| OA2 | PA | OA3 | H4 | 134.0° | 60.0° |
| OA3 | PA | OA2 | H3 | 134.6° | 60.0° |
| H5 | C5' | C4' | H7 | 61.5° | 172.8° |
| H6 | C5' | C4' | H7 | 59.5° | 67.2° |
| H7 | C4' | C3' | H8 | 162.0° | 146.2° |
| H8 | C3' | O3' | H9 | 56.5° | 61.1° |
| H8 | C3' | C2' | H10 | 37.9° | 0.1° |
| H10 | C2' | C1' | H14 | 96.3° | 146.3° |
| H11 | CM2 | H12 | H13 | 120.0° | 120.0° |
| H18 | CM7 | H19 | H20 | 120.0° | 120.0° |
