RPI
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| O2P | P | doub | 1.48Å | 1.50Å | |
| NH2 | P | sing | 1.64Å | 1.65Å | |
| NH2 | CZ | sing | 1.37Å | 1.44Å | |
| O1P | P | sing | 1.61Å | 1.51Å | |
| NH1 | CZ | doub | 1.30Å | 1.31Å | |
| P | O3P | sing | 1.61Å | 1.50Å | |
| CZ | NE | sing | 1.38Å | 1.39Å | |
| NE | CD | sing | 1.46Å | 1.41Å | |
| CD | CG | sing | 1.53Å | 1.51Å | |
| CG | CB | sing | 1.53Å | 1.51Å | |
| CB | CA | sing | 1.53Å | 1.51Å | |
| CA | C | sing | 1.51Å | 1.52Å | |
| CA | N | sing | 1.47Å | 1.44Å | |
| O | C | doub | 1.21Å | 1.27Å | |
| C | OXT | sing | 1.34Å | 1.26Å | |
| N | H | sing | 1.01Å | 1.00Å | |
| N | H2 | sing | 1.01Å | 1.00Å | |
| CA | HA | sing | 1.09Å | 1.10Å | |
| CB | H5 | sing | 1.09Å | 1.10Å | |
| CB | H6 | sing | 1.09Å | 1.10Å | |
| CG | H7 | sing | 1.09Å | 1.10Å | |
| CG | H8 | sing | 1.09Å | 1.10Å | |
| CD | H9 | sing | 1.09Å | 1.10Å | |
| CD | H10 | sing | 1.09Å | 1.10Å | |
| NE | H11 | sing | 0.97Å | 1.00Å | |
| NH1 | H12 | sing | 0.97Å | 1.00Å | |
| NH2 | H14 | sing | 0.97Å | 1.00Å | |
| O1P | H15 | sing | 0.97Å | 0.95Å | |
| O3P | H16 | sing | 0.97Å | 0.95Å | |
| OXT | HXT | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O2P | P | NH2 | 105.3° | 109.5° |
| O2P | P | O1P | 109.8° | 109.5° |
| O2P | P | O3P | 113.1° | 109.5° |
| P | NH2 | CZ | 127.3° | 120.0° |
| NH2 | P | O1P | 105.0° | 109.5° |
| NH2 | P | O3P | 112.9° | 109.5° |
| P | NH2 | H14 | 116.3° | 119.9° |
| NH2 | CZ | NH1 | 121.0° | 120.0° |
| NH2 | CZ | NE | 118.0° | 120.0° |
| CZ | NH2 | H14 | 116.4° | 120.0° |
| O1P | P | O3P | 110.3° | 109.5° |
| P | O1P | H15 | 109.5° | 114.0° |
| NH1 | CZ | NE | 121.0° | 120.0° |
| CZ | NH1 | H12 | 112.0° | 120.0° |
| P | O3P | H16 | 109.5° | 114.0° |
| CZ | NE | CD | 118.6° | 120.0° |
| CZ | NE | H11 | 120.7° | 119.9° |
| NE | CD | CG | 107.6° | 109.5° |
| NE | CD | H9 | 109.9° | 109.5° |
| NE | CD | H10 | 109.9° | 109.4° |
| CD | NE | H11 | 120.7° | 120.1° |
| CD | CG | CB | 109.4° | 109.5° |
| CD | CG | H7 | 109.5° | 109.5° |
| CD | CG | H8 | 109.5° | 109.4° |
| CG | CD | H9 | 109.9° | 109.5° |
| CG | CD | H10 | 110.0° | 109.4° |
| CG | CB | CA | 110.6° | 109.5° |
| CG | CB | H5 | 109.2° | 109.4° |
| CG | CB | H6 | 109.2° | 109.4° |
| CB | CG | H7 | 109.5° | 109.4° |
| CB | CG | H8 | 109.5° | 109.5° |
| CB | CA | C | 109.9° | 109.5° |
| CB | CA | N | 110.2° | 109.5° |
| CB | CA | HA | 107.5° | 109.5° |
| CA | CB | H5 | 109.2° | 109.5° |
| CA | CB | H6 | 109.2° | 109.5° |
| C | CA | N | 113.1° | 109.4° |
| CA | C | O | 121.7° | 120.0° |
| CA | C | OXT | 118.6° | 120.0° |
| C | CA | HA | 107.5° | 109.4° |
| CA | N | H | 109.5° | 111.0° |
| CA | N | H2 | 109.5° | 111.0° |
| N | CA | HA | 108.5° | 109.5° |
| O | C | OXT | 119.6° | 120.0° |
| C | OXT | HXT | 109.5° | 117.0° |
| H | N | H2 | 109.5° | 111.0° |
| H5 | CB | H6 | 109.5° | 109.5° |
| H7 | CG | H8 | 109.5° | 109.5° |
| H9 | CD | H10 | 109.5° | 109.5° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O2P | P | NH2 | O1P | 115.9° | 120.0° |
| O2P | P | NH2 | O3P | 123.9° | 120.0° |
| O2P | P | NH2 | CZ | 139.8° | 180.0° |
| O2P | P | O1P | O3P | 125.3° | 120.0° |
| O2P | P | NH2 | H14 | 40.1° | 0.0° |
| O2P | P | O1P | H15 | 0.0° | 180.0° |
| O2P | P | O3P | H16 | 0.0° | 60.0° |
| P | NH2 | CZ | H14 | 180.0° | 180.0° |
| NH2 | P | O1P | O3P | 121.9° | 120.0° |
| P | NH2 | CZ | NH1 | 174.1° | 0.0° |
| P | NH2 | CZ | NE | 6.3° | 180.0° |
| NH2 | P | O1P | H15 | 112.7° | 59.9° |
| NH2 | P | O3P | H16 | 119.4° | 180.0° |
| CZ | NH2 | P | O1P | 104.3° | 60.0° |
| NH2 | CZ | NH1 | NE | 179.5° | 180.0° |
| CZ | NH2 | P | O3P | 15.9° | 60.0° |
| NH2 | CZ | NE | CD | 179.7° | 180.0° |
| NH2 | CZ | NE | H11 | 0.3° | 0.0° |
| NH2 | CZ | NH1 | H12 | 179.6° | 179.9° |
| O1P | P | NH2 | H14 | 75.7° | 120.0° |
| O1P | P | O3P | H16 | 123.4° | 60.0° |
| NH1 | CZ | NE | CD | 0.1° | 0.0° |
| NH1 | CZ | NE | H11 | 179.9° | 180.0° |
| NH1 | CZ | NH2 | H14 | 5.9° | 180.0° |
| O3P | P | NH2 | H14 | 164.1° | 120.0° |
| O3P | P | O1P | H15 | 125.4° | 60.0° |
| CZ | NE | CD | H11 | 180.0° | 180.0° |
| CZ | NE | CD | CG | 139.2° | 180.0° |
| CZ | NE | CD | H9 | 19.5° | 60.0° |
| CZ | NE | CD | H10 | 101.0° | 60.0° |
| NE | CZ | NH1 | H12 | 0.0° | 0.1° |
| NE | CZ | NH2 | H14 | 173.7° | 0.0° |
| NE | CD | CG | H9 | 119.7° | 120.1° |
| NE | CD | CG | H10 | 119.7° | 119.9° |
| NE | CD | CG | CB | 77.2° | 180.0° |
| NE | CD | CG | H7 | 42.8° | 60.0° |
| NE | CD | CG | H8 | 162.8° | 60.0° |
| NE | CD | H9 | H10 | 120.8° | 120.0° |
| CD | CG | CB | H7 | 120.0° | 120.0° |
| CD | CG | CB | H8 | 120.0° | 120.0° |
| CD | CG | CB | CA | 108.7° | 180.0° |
| CD | CG | CB | H5 | 11.5° | 60.0° |
| CD | CG | CB | H6 | 131.1° | 60.0° |
| CD | CG | H7 | H8 | 120.0° | 120.0° |
| CG | CD | H9 | H10 | 120.9° | 120.0° |
| CG | CD | NE | H11 | 40.8° | 0.0° |
| CG | CB | CA | H5 | 120.2° | 120.0° |
| CG | CB | CA | H6 | 120.2° | 120.0° |
| CG | CB | CA | C | 161.2° | 175.0° |
| CG | CB | CA | N | 73.5° | 65.0° |
| CG | CB | CA | HA | 44.6° | 55.0° |
| CG | CB | H5 | H6 | 119.5° | 119.9° |
| CB | CG | H7 | H8 | 120.0° | 120.0° |
| CB | CG | CD | H9 | 163.1° | 60.0° |
| CB | CG | CD | H10 | 42.5° | 60.0° |
| CB | CA | C | N | 123.6° | 120.0° |
| CB | CA | C | HA | 116.7° | 120.0° |
| CB | CA | N | HA | 117.5° | 120.1° |
| CB | CA | C | O | 9.2° | 100.0° |
| CB | CA | C | OXT | 168.1° | 80.0° |
| CB | CA | N | H | 180.0° | 176.1° |
| CB | CA | N | H2 | 60.0° | 60.0° |
| CA | CB | H5 | H6 | 119.5° | 120.1° |
| CA | CB | CG | H7 | 131.3° | 60.0° |
| CA | CB | CG | H8 | 11.3° | 60.0° |
| C | CA | N | HA | 119.1° | 119.9° |
| CA | C | O | OXT | 177.2° | 179.9° |
| C | CA | N | H | 56.5° | 63.9° |
| C | CA | N | H2 | 63.5° | 60.0° |
| C | CA | CB | H5 | 41.1° | 65.0° |
| C | CA | CB | H6 | 78.6° | 55.0° |
| CA | C | OXT | HXT | 177.3° | 180.0° |
| N | CA | C | O | 114.4° | 20.0° |
| N | CA | C | OXT | 68.3° | 160.1° |
| CA | N | H | H2 | 120.0° | 124.0° |
| N | CA | CB | H5 | 166.3° | 54.9° |
| N | CA | CB | H6 | 46.7° | 175.0° |
| O | C | CA | HA | 125.9° | 140.0° |
| O | C | OXT | HXT | 0.0° | 0.1° |
| OXT | C | CA | HA | 51.4° | 40.1° |
| H | N | CA | HA | 62.6° | 56.0° |
| H2 | N | CA | HA | 177.4° | 180.0° |
| HA | CA | CB | H5 | 75.6° | 175.0° |
| HA | CA | CB | H6 | 164.7° | 64.9° |
| H5 | CB | CG | H7 | 108.5° | 180.0° |
| H5 | CB | CG | H8 | 131.5° | 60.0° |
| H6 | CB | CG | H7 | 11.1° | 60.1° |
| H6 | CB | CG | H8 | 108.9° | 180.0° |
| H7 | CG | CD | H9 | 76.9° | 180.0° |
| H7 | CG | CD | H10 | 162.5° | 60.0° |
| H8 | CG | CD | H9 | 43.1° | 60.0° |
| H8 | CG | CD | H10 | 77.5° | 180.0° |
| H9 | CD | NE | H11 | 160.5° | 120.0° |
| H10 | CD | NE | H11 | 79.0° | 119.9° |
