RPC
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| OP2 | P | doub | 1.48Å | 1.49Å | |
| OP5 | P2 | doub | 1.48Å | 1.60Å | |
| OP6 | P2 | sing | 1.61Å | 1.49Å | |
| OP1 | P | sing | 1.61Å | 1.49Å | |
| P | O5' | sing | 1.61Å | 1.58Å | |
| C5' | O5' | sing | 1.43Å | 1.41Å | |
| C5' | C4' | sing | 1.53Å | 1.50Å | |
| P2 | O3' | sing | 1.61Å | 1.60Å | |
| P2 | OP4 | sing | 1.61Å | 1.49Å | |
| C3' | C4' | sing | 1.54Å | 1.52Å | |
| C3' | O3' | sing | 1.43Å | 1.42Å | |
| C3' | C2' | sing | 1.55Å | 1.52Å | |
| C4' | O4' | sing | 1.44Å | 1.46Å | |
| C2' | O2' | sing | 1.43Å | 1.41Å | |
| C2' | C1' | sing | 1.55Å | 1.53Å | |
| O4' | C1' | sing | 1.44Å | 1.42Å | |
| C1' | N1 | sing | 1.46Å | 1.47Å | |
| C6 | N1 | sing | 1.36Å | 1.36Å | |
| C6 | C5 | doub | 1.35Å | 1.34Å | |
| N1 | C2 | sing | 1.35Å | 1.40Å | |
| C5 | C4 | sing | 1.41Å | 1.43Å | |
| C2 | O2 | doub | 1.22Å | 1.24Å | |
| C2 | N3 | sing | 1.33Å | 1.36Å | |
| C4 | N3 | doub | 1.33Å | 1.33Å | |
| C4 | N4 | sing | 1.38Å | 1.34Å | |
| OP1 | H1 | sing | 0.97Å | 0.95Å | |
| C5' | H2 | sing | 1.09Å | 1.10Å | |
| C5' | H3 | sing | 1.09Å | 1.10Å | |
| C4' | H4 | sing | 1.09Å | 1.10Å | |
| C3' | H5 | sing | 1.09Å | 1.10Å | |
| C2' | H6 | sing | 1.09Å | 1.10Å | |
| O2' | H7 | sing | 0.97Å | 0.95Å | |
| C1' | H8 | sing | 1.09Å | 1.10Å | |
| C6 | H9 | sing | 1.08Å | 1.08Å | |
| C5 | H10 | sing | 1.08Å | 1.08Å | |
| N4 | H11 | sing | 0.97Å | 1.00Å | |
| N4 | H12 | sing | 0.97Å | 1.00Å | |
| OP4 | H14 | sing | 0.97Å | 0.95Å | |
| OP6 | H15 | sing | 0.97Å | 0.95Å | |
| P | OP3 | sing | 1.61Å | 56.76Å | |
| OP3 | H17 | sing | 0.97Å | 0.00Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| OP2 | P | OP1 | 121.7° | 109.5° |
| OP2 | P | O5' | 106.9° | 109.4° |
| OP2 | P | OP3 | 74.6° | 109.5° |
| OP5 | P2 | OP6 | 107.9° | 109.5° |
| OP5 | P2 | O3' | 103.8° | 109.5° |
| OP5 | P2 | OP4 | 109.7° | 109.4° |
| OP6 | P2 | O3' | 106.6° | 109.5° |
| OP6 | P2 | OP4 | 121.2° | 109.5° |
| P2 | OP6 | H15 | 109.5° | 114.0° |
| OP1 | P | O5' | 108.2° | 109.5° |
| P | OP1 | H1 | 109.5° | 114.0° |
| OP1 | P | OP3 | 141.6° | 109.5° |
| P | O5' | C5' | 119.6° | 123.0° |
| O5' | P | OP3 | 97.6° | 109.5° |
| O5' | C5' | C4' | 110.8° | 109.5° |
| O5' | C5' | H2 | 109.1° | 109.5° |
| O5' | C5' | H3 | 109.1° | 109.5° |
| C5' | C4' | C3' | 113.7° | 109.9° |
| C5' | C4' | O4' | 109.0° | 109.9° |
| C4' | C5' | H2 | 109.1° | 109.4° |
| C4' | C5' | H3 | 109.1° | 109.5° |
| C5' | C4' | H4 | 109.2° | 109.8° |
| O3' | P2 | OP4 | 106.2° | 109.4° |
| P2 | O3' | C3' | 119.7° | 123.0° |
| P2 | OP4 | H14 | 109.5° | 114.0° |
| C4' | C3' | O3' | 108.6° | 110.5° |
| C4' | C3' | C2' | 102.3° | 104.1° |
| C3' | C4' | O4' | 106.2° | 107.3° |
| C3' | C4' | H4 | 108.9° | 110.0° |
| C4' | C3' | H5 | 111.3° | 110.5° |
| O3' | C3' | C2' | 110.0° | 110.5° |
| O3' | C3' | H5 | 112.9° | 110.5° |
| C3' | C2' | O2' | 115.0° | 110.8° |
| C3' | C2' | C1' | 101.1° | 102.1° |
| C2' | C3' | H5 | 111.3° | 110.6° |
| C3' | C2' | H6 | 108.9° | 110.9° |
| C4' | O4' | C1' | 109.4° | 107.0° |
| O4' | C4' | H4 | 109.8° | 109.9° |
| O2' | C2' | C1' | 112.2° | 110.9° |
| O2' | C2' | H6 | 110.4° | 110.8° |
| C2' | O2' | H7 | 109.5° | 113.9° |
| C2' | C1' | O4' | 105.7° | 103.5° |
| C2' | C1' | N1 | 114.6° | 110.6° |
| C1' | C2' | H6 | 108.9° | 111.0° |
| C2' | C1' | H8 | 108.5° | 110.6° |
| O4' | C1' | N1 | 108.8° | 110.6° |
| O4' | C1' | H8 | 110.0° | 110.7° |
| C1' | N1 | C6 | 122.4° | 119.8° |
| C1' | N1 | C2 | 117.7° | 119.8° |
| N1 | C1' | H8 | 109.2° | 110.6° |
| N1 | C6 | C5 | 121.0° | 119.3° |
| C6 | N1 | C2 | 119.9° | 120.4° |
| N1 | C6 | H9 | 119.5° | 120.4° |
| C6 | C5 | C4 | 118.0° | 118.9° |
| C5 | C6 | H9 | 119.5° | 120.3° |
| C6 | C5 | H10 | 121.0° | 120.6° |
| N1 | C2 | O2 | 117.6° | 119.5° |
| N1 | C2 | N3 | 119.8° | 121.0° |
| C5 | C4 | N3 | 121.5° | 119.6° |
| C5 | C4 | N4 | 120.2° | 120.2° |
| C4 | C5 | H10 | 121.0° | 120.5° |
| O2 | C2 | N3 | 122.6° | 119.5° |
| C2 | N3 | C4 | 119.8° | 120.7° |
| N3 | C4 | N4 | 118.3° | 120.2° |
| C4 | N4 | H11 | 120.0° | 119.9° |
| C4 | N4 | H12 | 120.0° | 120.0° |
| H2 | C5' | H3 | 109.5° | 109.4° |
| H11 | N4 | H12 | 120.0° | 120.0° |
| P | OP3 | H17 | 90.0° | 114.1° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| OP2 | P | OP1 | O5' | 124.3° | 120.0° |
| OP2 | P | OP1 | OP3 | 106.1° | 120.0° |
| OP2 | P | O5' | OP3 | 76.2° | 120.0° |
| OP2 | P | O5' | C5' | 20.6° | 55.0° |
| OP2 | P | OP1 | H1 | 0.0° | 180.0° |
| OP2 | P | OP3 | H17 | 90.0° | 60.0° |
| OP5 | P2 | OP6 | O3' | 111.0° | 120.0° |
| OP5 | P2 | OP6 | OP4 | 127.6° | 120.0° |
| OP5 | P2 | O3' | OP4 | 115.7° | 119.9° |
| OP5 | P2 | O3' | C3' | 119.0° | 55.0° |
| OP5 | P2 | OP4 | H14 | 0.0° | 180.0° |
| OP5 | P2 | OP6 | H15 | 0.0° | 60.0° |
| OP6 | P2 | O3' | OP4 | 130.5° | 120.0° |
| OP6 | P2 | O3' | C3' | 5.2° | 175.0° |
| OP6 | P2 | OP4 | H14 | 126.8° | 60.0° |
| OP1 | P | O5' | OP3 | 151.1° | 120.0° |
| OP1 | P | O5' | C5' | 112.1° | 65.0° |
| OP1 | P | OP3 | H17 | 90.0° | 60.0° |
| P | O5' | C5' | C4' | 131.8° | 180.0° |
| O5' | P | OP1 | H1 | 124.3° | 60.0° |
| P | O5' | C5' | H2 | 107.9° | 60.0° |
| P | O5' | C5' | H3 | 11.6° | 60.0° |
| O5' | P | OP3 | H17 | 90.0° | 180.0° |
| O5' | C5' | C4' | H2 | 120.2° | 120.0° |
| O5' | C5' | C4' | H3 | 120.2° | 120.0° |
| O5' | C5' | C4' | C3' | 137.6° | 175.7° |
| O5' | C5' | C4' | O4' | 19.4° | 66.4° |
| O5' | C5' | H2 | H3 | 119.4° | 120.0° |
| O5' | C5' | C4' | H4 | 100.6° | 54.6° |
| C5' | O5' | P | OP3 | 96.8° | 175.0° |
| C5' | C4' | C3' | O4' | 119.8° | 119.4° |
| C5' | C4' | C3' | H4 | 122.1° | 121.0° |
| C5' | C4' | C3' | O3' | 150.1° | 119.8° |
| C5' | C4' | C3' | C2' | 93.6° | 121.5° |
| C5' | C4' | O4' | H4 | 119.6° | 121.0° |
| C5' | C4' | O4' | C1' | 119.4° | 146.0° |
| C4' | C5' | H2 | H3 | 119.4° | 120.0° |
| C5' | C4' | C3' | H5 | 25.3° | 2.7° |
| P2 | O3' | C3' | C4' | 153.6° | 120.0° |
| P2 | O3' | C3' | C2' | 95.3° | 125.2° |
| P2 | O3' | C3' | H5 | 29.7° | 2.5° |
| O3' | P2 | OP4 | H14 | 111.6° | 60.1° |
| O3' | P2 | OP6 | H15 | 111.0° | 180.0° |
| OP4 | P2 | O3' | C3' | 125.3° | 65.0° |
| OP4 | P2 | OP6 | H15 | 127.6° | 60.0° |
| C4' | C3' | O3' | C2' | 111.2° | 114.7° |
| C4' | C3' | O3' | H5 | 123.9° | 122.6° |
| C4' | C3' | C2' | H5 | 118.9° | 118.7° |
| C3' | C4' | O4' | H4 | 117.6° | 119.6° |
| C4' | C3' | C2' | O2' | 158.4° | 139.1° |
| C4' | C3' | C2' | C1' | 37.3° | 20.9° |
| C3' | C4' | O4' | C1' | 3.5° | 26.5° |
| C3' | C4' | C5' | H2 | 17.4° | 64.3° |
| C3' | C4' | C5' | H3 | 102.2° | 55.7° |
| C4' | C3' | C2' | H6 | 77.2° | 97.4° |
| O3' | C3' | C2' | H5 | 125.8° | 122.6° |
| O3' | C3' | C4' | O4' | 90.0° | 120.7° |
| O3' | C3' | C2' | O2' | 43.2° | 20.4° |
| O3' | C3' | C2' | C1' | 77.9° | 97.8° |
| O3' | C3' | C4' | H4 | 28.1° | 1.2° |
| O3' | C3' | C2' | H6 | 167.6° | 143.9° |
| C2' | C3' | C4' | O4' | 26.2° | 2.0° |
| C3' | C2' | O2' | C1' | 114.8° | 112.7° |
| C3' | C2' | O2' | H6 | 123.6° | 123.6° |
| C3' | C2' | C1' | H6 | 114.5° | 118.3° |
| C3' | C2' | C1' | O4' | 36.6° | 37.1° |
| C3' | C2' | C1' | N1 | 156.4° | 155.5° |
| C2' | C3' | C4' | H4 | 144.3° | 117.5° |
| C3' | C2' | O2' | H7 | 135.6° | 180.0° |
| C3' | C2' | C1' | H8 | 81.3° | 81.6° |
| C4' | O4' | C1' | C2' | 21.0° | 40.1° |
| C4' | O4' | C1' | N1 | 144.5° | 158.6° |
| O4' | C4' | C5' | H2 | 100.9° | 53.6° |
| O4' | C4' | C5' | H3 | 139.5° | 173.5° |
| O4' | C4' | C3' | H5 | 145.1° | 116.7° |
| C4' | O4' | C1' | H8 | 95.9° | 78.5° |
| O2' | C2' | C1' | H6 | 122.5° | 123.6° |
| O2' | C2' | C1' | O4' | 159.6° | 155.2° |
| O2' | C2' | C1' | N1 | 80.6° | 86.3° |
| O2' | C2' | C3' | H5 | 82.7° | 102.2° |
| O2' | C2' | C1' | H8 | 41.7° | 36.5° |
| C2' | C1' | O4' | N1 | 123.5° | 118.5° |
| C2' | C1' | O4' | H8 | 116.9° | 118.6° |
| C2' | C1' | N1 | H8 | 121.9° | 122.9° |
| C2' | C1' | N1 | C6 | 97.3° | 115.2° |
| C2' | C1' | N1 | C2 | 83.4° | 64.9° |
| C1' | C2' | C3' | H5 | 156.3° | 139.6° |
| C1' | C2' | O2' | H7 | 20.9° | 67.3° |
| O4' | C1' | N1 | H8 | 120.1° | 123.0° |
| O4' | C1' | N1 | C6 | 20.7° | 130.7° |
| O4' | C1' | N1 | C2 | 158.5° | 49.2° |
| C1' | O4' | C4' | H4 | 121.0° | 93.0° |
| O4' | C1' | C2' | H6 | 77.9° | 81.2° |
| C1' | N1 | C6 | C2 | 179.3° | 179.8° |
| C1' | N1 | C6 | C5 | 179.7° | 180.0° |
| C1' | N1 | C2 | O2 | 0.6° | 0.1° |
| C1' | N1 | C2 | N3 | 179.8° | 179.7° |
| N1 | C1' | C2' | H6 | 41.9° | 37.3° |
| C1' | N1 | C6 | H9 | 0.3° | 0.0° |
| N1 | C6 | C5 | H9 | 180.0° | 180.0° |
| N1 | C6 | C5 | C4 | 0.5° | 0.0° |
| C6 | N1 | C2 | O2 | 179.9° | 179.7° |
| C6 | N1 | C2 | N3 | 0.5° | 0.4° |
| C6 | N1 | C1' | H8 | 140.8° | 7.7° |
| N1 | C6 | C5 | H10 | 179.5° | 180.0° |
| C5 | C6 | N1 | C2 | 0.4° | 0.2° |
| C6 | C5 | C4 | H10 | 180.0° | 180.0° |
| C6 | C5 | C4 | N3 | 0.6° | 0.1° |
| C6 | C5 | C4 | N4 | 179.6° | 180.0° |
| N1 | C2 | O2 | N3 | 179.6° | 179.9° |
| N1 | C2 | N3 | C4 | 0.6° | 0.5° |
| C2 | N1 | C1' | H8 | 38.4° | 172.2° |
| C2 | N1 | C6 | H9 | 179.6° | 179.8° |
| C5 | C4 | N3 | C2 | 0.7° | 0.3° |
| C5 | C4 | N3 | N4 | 179.8° | 179.9° |
| C4 | C5 | C6 | H9 | 179.6° | 180.0° |
| C5 | C4 | N4 | H11 | 179.8° | 0.0° |
| C5 | C4 | N4 | H12 | 0.2° | 179.9° |
| O2 | C2 | N3 | C4 | 179.8° | 179.6° |
| C2 | N3 | C4 | N4 | 179.5° | 179.7° |
| N3 | C4 | C5 | H10 | 179.4° | 180.0° |
| N3 | C4 | N4 | H11 | 0.0° | 180.0° |
| N3 | C4 | N4 | H12 | 180.0° | 0.0° |
| N4 | C4 | C5 | H10 | 0.4° | 0.0° |
| C4 | N4 | H11 | H12 | 180.0° | 179.9° |
| H1 | OP1 | P | OP3 | 106.1° | 60.0° |
| H2 | C5' | C4' | H4 | 139.2° | 174.6° |
| H3 | C5' | C4' | H4 | 19.6° | 65.4° |
| H4 | C4' | C3' | H5 | 96.8° | 123.7° |
| H5 | C3' | C2' | H6 | 41.7° | 21.3° |
| H6 | C2' | O2' | H7 | 100.8° | 56.4° |
| H6 | C2' | C1' | H8 | 164.1° | 160.2° |
| H9 | C6 | C5 | H10 | 0.5° | 0.1° |
