RP2
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| P | S1P | doub | 1.86Å | 1.80Å | |
| P | O2P | sing | 1.61Å | 1.49Å | |
| P | O3' | sing | 1.63Å | 1.60Å | |
| P | O5' | sing | 1.62Å | 1.63Å | |
| BR | C8 | sing | 1.89Å | 1.82Å | |
| N1 | C2 | doub | 1.32Å | 1.36Å | Aromatic |
| N1 | C6 | sing | 1.33Å | 1.39Å | Aromatic |
| C2 | N3 | sing | 1.32Å | 1.35Å | Aromatic |
| N3 | C4 | doub | 1.33Å | 1.41Å | Aromatic |
| C4 | C5 | sing | 1.41Å | 1.39Å | Aromatic |
| C4 | N9 | sing | 1.37Å | 1.38Å | Aromatic |
| C5 | C6 | doub | 1.40Å | 1.44Å | Aromatic |
| C5 | N7 | sing | 1.35Å | 1.39Å | Aromatic |
| C6 | N6 | sing | 1.38Å | 1.31Å | |
| N7 | C8 | doub | 1.30Å | 1.34Å | Aromatic |
| C8 | N9 | sing | 1.36Å | 1.36Å | Aromatic |
| N9 | C1' | sing | 1.46Å | 1.47Å | |
| C1' | C2' | sing | 1.55Å | 1.54Å | |
| C1' | O4' | sing | 1.45Å | 1.41Å | |
| C2' | O2' | sing | 1.43Å | 1.41Å | |
| C2' | C3' | sing | 1.53Å | 1.52Å | |
| C3' | O3' | sing | 1.43Å | 1.42Å | |
| C3' | C4' | sing | 1.55Å | 1.52Å | |
| C4' | O4' | sing | 1.42Å | 1.44Å | |
| C4' | C5' | sing | 1.52Å | 1.49Å | |
| C5' | O5' | sing | 1.45Å | 1.49Å | |
| C2 | H2 | sing | 1.08Å | 1.08Å | |
| N6 | HN6 | sing | 0.97Å | 1.00Å | |
| N6 | HN6A | sing | 0.97Å | 1.00Å | |
| C1' | H1' | sing | 1.09Å | 1.10Å | |
| C2' | H2' | sing | 1.09Å | 1.10Å | |
| O2' | HO2' | sing | 0.97Å | 0.95Å | |
| O2P | HO2P | sing | 0.97Å | 0.95Å | |
| C3' | H3' | sing | 1.09Å | 1.10Å | |
| C4' | H4' | sing | 1.09Å | 1.10Å | |
| C5' | H5' | sing | 1.09Å | 1.10Å | |
| C5' | H5'A | sing | 1.09Å | 1.10Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| S1P | P | O2P | 118.0° | 110.0° |
| S1P | P | O3' | 109.5° | 110.0° |
| S1P | P | O5' | 110.9° | 110.0° |
| O2P | P | O3' | 111.4° | 109.9° |
| O2P | P | O5' | 107.9° | 110.0° |
| P | O2P | HO2P | 109.5° | 114.0° |
| O3' | P | O5' | 97.3° | 106.9° |
| P | O3' | C3' | 117.6° | 116.6° |
| P | O5' | C5' | 119.1° | 120.2° |
| BR | C8 | N7 | 122.6° | 125.0° |
| BR | C8 | N9 | 124.9° | 125.0° |
| C2 | N1 | C6 | 119.2° | 121.2° |
| N1 | C2 | N3 | 126.3° | 122.5° |
| N1 | C2 | H2 | 116.9° | 118.8° |
| N1 | C6 | C5 | 119.7° | 118.5° |
| N1 | C6 | N6 | 117.4° | 120.8° |
| C2 | N3 | C4 | 112.9° | 120.6° |
| N3 | C2 | H2 | 116.8° | 118.7° |
| N3 | C4 | C5 | 127.1° | 119.1° |
| N3 | C4 | N9 | 127.6° | 134.9° |
| C5 | C4 | N9 | 105.3° | 106.0° |
| C4 | C5 | C6 | 114.8° | 118.2° |
| C4 | C5 | N7 | 110.8° | 107.2° |
| C4 | N9 | C8 | 107.2° | 107.4° |
| C4 | N9 | C1' | 129.2° | 126.3° |
| C6 | C5 | N7 | 134.4° | 134.7° |
| C5 | C6 | N6 | 122.9° | 120.8° |
| C5 | N7 | C8 | 104.1° | 109.4° |
| C6 | N6 | HN6 | 109.5° | 120.0° |
| C6 | N6 | HN6A | 109.5° | 120.0° |
| N7 | C8 | N9 | 112.6° | 110.0° |
| C8 | N9 | C1' | 123.6° | 126.3° |
| N9 | C1' | C2' | 115.8° | 109.9° |
| N9 | C1' | O4' | 105.3° | 110.0° |
| N9 | C1' | H1' | 107.6° | 109.9° |
| C2' | C1' | O4' | 107.8° | 107.1° |
| C1' | C2' | O2' | 113.6° | 110.6° |
| C1' | C2' | C3' | 102.9° | 103.3° |
| C2' | C1' | H1' | 105.1° | 109.9° |
| C1' | C2' | H2' | 112.9° | 110.6° |
| C1' | O4' | C4' | 107.1° | 105.4° |
| O4' | C1' | H1' | 115.6° | 110.0° |
| O2' | C2' | C3' | 114.1° | 110.6° |
| O2' | C2' | H2' | 101.4° | 110.7° |
| C2' | O2' | HO2' | 109.5° | 114.0° |
| C2' | C3' | O3' | 119.6° | 114.6° |
| C2' | C3' | C4' | 99.0° | 101.0° |
| C3' | C2' | H2' | 112.4° | 110.8° |
| C2' | C3' | H3' | 108.6° | 111.3° |
| O3' | C3' | C4' | 104.5° | 106.2° |
| O3' | C3' | H3' | 103.5° | 111.1° |
| C3' | C4' | O4' | 105.5° | 103.0° |
| C3' | C4' | C5' | 114.2° | 109.0° |
| C4' | C3' | H3' | 122.8° | 112.2° |
| C3' | C4' | H4' | 113.6° | 109.5° |
| O4' | C4' | C5' | 119.8° | 116.6° |
| O4' | C4' | H4' | 107.0° | 109.6° |
| C4' | C5' | O5' | 109.5° | 106.7° |
| C5' | C4' | H4' | 96.7° | 108.9° |
| C4' | C5' | H5' | 109.5° | 110.0° |
| C4' | C5' | H5'A | 109.4° | 110.0° |
| O5' | C5' | H5' | 109.5° | 110.0° |
| O5' | C5' | H5'A | 109.4° | 110.0° |
| HN6 | N6 | HN6A | 109.5° | 120.0° |
| H5' | C5' | H5'A | 109.5° | 110.1° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| S1P | P | O2P | O3' | 127.8° | 121.2° |
| S1P | P | O2P | O5' | 126.5° | 121.3° |
| S1P | P | O3' | O5' | 115.2° | 119.4° |
| S1P | P | O3' | C3' | 176.9° | 157.3° |
| S1P | P | O5' | C5' | 164.2° | 153.4° |
| S1P | P | O2P | HO2P | 0.0° | 60.0° |
| O2P | P | O3' | O5' | 112.5° | 119.4° |
| O2P | P | O3' | C3' | 50.8° | 81.4° |
| O2P | P | O5' | C5' | 65.2° | 85.4° |
| P | O3' | C3' | C2' | 178.7° | 167.9° |
| P | O3' | C3' | C4' | 69.3° | 57.4° |
| O3' | P | O5' | C5' | 50.1° | 34.0° |
| O3' | P | O2P | HO2P | 127.9° | 178.8° |
| P | O3' | C3' | H3' | 60.3° | 64.8° |
| O5' | P | O3' | C3' | 61.7° | 37.9° |
| P | O5' | C5' | C4' | 50.9° | 49.6° |
| O5' | P | O2P | HO2P | 126.5° | 61.3° |
| P | O5' | C5' | H5' | 69.1° | 69.7° |
| P | O5' | C5' | H5'A | 170.9° | 169.0° |
| BR | C8 | N9 | C4 | 179.9° | 180.0° |
| BR | C8 | N7 | C5 | 179.8° | 180.0° |
| BR | C8 | N7 | N9 | 179.5° | 180.0° |
| BR | C8 | N9 | C1' | 0.5° | 0.1° |
| N1 | C2 | N3 | H2 | 180.0° | 180.0° |
| N1 | C2 | N3 | C4 | 0.0° | 0.1° |
| C2 | N1 | C6 | C5 | 0.4° | 0.0° |
| C2 | N1 | C6 | N6 | 179.7° | 180.0° |
| C6 | N1 | C2 | N3 | 0.1° | 0.0° |
| N1 | C6 | C5 | C4 | 0.6° | 0.0° |
| N1 | C6 | C5 | N6 | 179.3° | 179.9° |
| N1 | C6 | C5 | N7 | 179.7° | 180.0° |
| C6 | N1 | C2 | H2 | 179.9° | 179.9° |
| N1 | C6 | N6 | HN6 | 0.0° | 0.0° |
| N1 | C6 | N6 | HN6A | 120.0° | 179.9° |
| C2 | N3 | C4 | C5 | 0.2° | 0.0° |
| C2 | N3 | C4 | N9 | 179.5° | 179.9° |
| N3 | C4 | C5 | N9 | 179.8° | 180.0° |
| N3 | C4 | C5 | C6 | 0.5° | 0.0° |
| N3 | C4 | C5 | N7 | 179.9° | 180.0° |
| N3 | C4 | N9 | C8 | 180.0° | 180.0° |
| N3 | C4 | N9 | C1' | 0.4° | 0.0° |
| C4 | N3 | C2 | H2 | 180.0° | 179.9° |
| C4 | C5 | C6 | N7 | 179.2° | 180.0° |
| C4 | C5 | C6 | N6 | 179.9° | 180.0° |
| C4 | C5 | N7 | C8 | 0.1° | 0.0° |
| C5 | C4 | N9 | C8 | 0.2° | 0.0° |
| C5 | C4 | N9 | C1' | 179.8° | 180.0° |
| N9 | C4 | C5 | C6 | 179.3° | 180.0° |
| N9 | C4 | C5 | N7 | 0.1° | 0.0° |
| C4 | N9 | C8 | N7 | 0.3° | 0.0° |
| C4 | N9 | C8 | C1' | 179.6° | 180.0° |
| C4 | N9 | C1' | C2' | 60.6° | 105.0° |
| C4 | N9 | C1' | O4' | 58.4° | 137.3° |
| C4 | N9 | C1' | H1' | 177.8° | 16.0° |
| C6 | C5 | N7 | C8 | 179.3° | 179.9° |
| C5 | C6 | N6 | HN6 | 179.3° | 180.0° |
| C5 | C6 | N6 | HN6A | 60.7° | 0.0° |
| N7 | C5 | C6 | N6 | 1.0° | 0.1° |
| C5 | N7 | C8 | N9 | 0.3° | 0.0° |
| C6 | N6 | HN6 | HN6A | 120.0° | 180.0° |
| N7 | C8 | N9 | C1' | 179.9° | 180.0° |
| C8 | N9 | C1' | C2' | 119.9° | 75.1° |
| C8 | N9 | C1' | O4' | 121.2° | 42.6° |
| C8 | N9 | C1' | H1' | 2.7° | 163.9° |
| N9 | C1' | C2' | O4' | 117.6° | 119.4° |
| N9 | C1' | C2' | H1' | 118.5° | 121.1° |
| N9 | C1' | O4' | H1' | 118.6° | 121.2° |
| N9 | C1' | C2' | O2' | 137.0° | 123.4° |
| N9 | C1' | C2' | C3' | 99.1° | 118.2° |
| N9 | C1' | O4' | C4' | 132.3° | 146.1° |
| N9 | C1' | C2' | H2' | 22.3° | 0.4° |
| C2' | C1' | O4' | H1' | 117.2° | 119.4° |
| C1' | C2' | O2' | C3' | 117.5° | 113.8° |
| C1' | C2' | O2' | H2' | 121.4° | 123.0° |
| C1' | C2' | C3' | H2' | 121.7° | 118.5° |
| C1' | C2' | C3' | O3' | 147.9° | 139.4° |
| C1' | C2' | C3' | C4' | 35.4° | 25.8° |
| C2' | C1' | O4' | C4' | 8.1° | 26.7° |
| C1' | C2' | O2' | HO2' | 180.0° | 61.5° |
| C1' | C2' | C3' | H3' | 93.8° | 93.4° |
| O4' | C1' | C2' | O2' | 105.3° | 117.2° |
| O4' | C1' | C2' | C3' | 18.6° | 1.2° |
| C1' | O4' | C4' | C3' | 32.1° | 43.6° |
| C1' | O4' | C4' | C5' | 162.5° | 163.0° |
| O4' | C1' | C2' | H2' | 139.9° | 119.8° |
| C1' | O4' | C4' | H4' | 89.1° | 72.8° |
| O2' | C2' | C3' | H2' | 114.7° | 123.1° |
| O2' | C2' | C3' | O3' | 24.3° | 21.0° |
| O2' | C2' | C3' | C4' | 88.1° | 92.6° |
| O2' | C2' | C1' | H1' | 18.5° | 2.3° |
| O2' | C2' | C3' | H3' | 142.7° | 148.2° |
| C2' | C3' | O3' | C4' | 109.4° | 110.6° |
| C2' | C3' | O3' | H3' | 121.0° | 127.2° |
| C2' | C3' | C4' | H3' | 119.1° | 118.5° |
| C2' | C3' | C4' | O4' | 42.1° | 43.1° |
| C2' | C3' | C4' | C5' | 175.7° | 167.5° |
| C3' | C2' | C1' | H1' | 142.4° | 120.7° |
| C3' | C2' | O2' | HO2' | 62.4° | 175.3° |
| C2' | C3' | C4' | H4' | 74.8° | 73.4° |
| O3' | C3' | C4' | H3' | 117.0° | 121.6° |
| O3' | C3' | C4' | O4' | 166.0° | 163.0° |
| O3' | C3' | C4' | C5' | 60.5° | 72.6° |
| O3' | C3' | C2' | H2' | 90.4° | 102.1° |
| O3' | C3' | C4' | H4' | 49.1° | 46.5° |
| C3' | C4' | O4' | C5' | 130.4° | 119.3° |
| C3' | C4' | O4' | H4' | 121.2° | 116.5° |
| C3' | C4' | C5' | H4' | 119.6° | 119.5° |
| C3' | C4' | C5' | O5' | 52.6° | 67.1° |
| C4' | C3' | C2' | H2' | 157.2° | 144.2° |
| C3' | C4' | C5' | H5' | 67.4° | 52.1° |
| C3' | C4' | C5' | H5'A | 172.6° | 173.6° |
| O4' | C4' | C5' | H4' | 114.0° | 124.5° |
| O4' | C4' | C5' | O5' | 179.1° | 176.9° |
| C4' | O4' | C1' | H1' | 109.1° | 92.7° |
| O4' | C4' | C3' | H3' | 77.0° | 75.5° |
| O4' | C4' | C5' | H5' | 59.0° | 63.9° |
| O4' | C4' | C5' | H5'A | 60.9° | 57.6° |
| C4' | C5' | O5' | H5' | 120.0° | 119.3° |
| C4' | C5' | O5' | H5'A | 120.0° | 119.3° |
| C5' | C4' | C3' | H3' | 56.5° | 48.9° |
| C4' | C5' | H5' | H5'A | 120.0° | 121.4° |
| O5' | C5' | C4' | H4' | 67.0° | 52.3° |
| O5' | C5' | H5' | H5'A | 120.0° | 121.3° |
| H1' | C1' | C2' | H2' | 96.2° | 120.7° |
| H2' | C2' | O2' | HO2' | 58.6° | 61.5° |
| H2' | C2' | C3' | H3' | 28.0° | 25.0° |
| H3' | C3' | C4' | H4' | 166.1° | 168.0° |
| H4' | C4' | C5' | H5' | 173.0° | 171.6° |
| H4' | C4' | C5' | H5'A | 53.0° | 67.0° |
