RP1
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| P | S1P | doub | 1.86Å | 1.76Å | |
| P | O2P | sing | 1.61Å | 1.48Å | |
| P | O5' | sing | 1.61Å | 1.60Å | |
| P | O3' | sing | 1.62Å | 1.61Å | |
| O2P | HOP2 | sing | 0.97Å | 0.95Å | |
| O5' | C5' | sing | 1.43Å | 1.44Å | |
| C5' | C4' | sing | 1.52Å | 1.50Å | |
| C5' | H5'1 | sing | 1.09Å | 1.10Å | |
| C5' | H5'2 | sing | 1.09Å | 1.10Å | |
| C4' | O4' | sing | 1.43Å | 1.44Å | |
| C4' | C3' | sing | 1.55Å | 1.50Å | |
| C4' | H4' | sing | 1.09Å | 1.10Å | |
| O4' | C1' | sing | 1.45Å | 1.42Å | |
| C3' | O3' | sing | 1.41Å | 1.42Å | |
| C3' | C2' | sing | 1.54Å | 1.53Å | |
| C3' | H3' | sing | 1.09Å | 1.10Å | |
| C2' | O2' | sing | 1.43Å | 1.42Å | |
| C2' | C1' | sing | 1.55Å | 1.53Å | |
| C2' | H2' | sing | 1.09Å | 1.10Å | |
| O2' | HO2' | sing | 0.97Å | 0.95Å | |
| C1' | N9 | sing | 1.47Å | 1.46Å | |
| C1' | H1' | sing | 1.09Å | 1.10Å | |
| N9 | C8 | sing | 1.36Å | 1.37Å | Aromatic |
| N9 | C4 | sing | 1.37Å | 1.38Å | Aromatic |
| C8 | N7 | doub | 1.30Å | 1.31Å | Aromatic |
| C8 | H8 | sing | 1.08Å | 1.08Å | |
| N7 | C5 | sing | 1.35Å | 1.39Å | Aromatic |
| C5 | C6 | doub | 1.40Å | 1.39Å | Aromatic |
| C5 | C4 | sing | 1.41Å | 1.38Å | Aromatic |
| C6 | N6 | sing | 1.38Å | 1.33Å | |
| C6 | N1 | sing | 1.33Å | 1.35Å | Aromatic |
| N6 | HN61 | sing | 0.97Å | 1.00Å | |
| N6 | HN62 | sing | 0.97Å | 1.00Å | |
| N1 | C2 | doub | 1.32Å | 1.34Å | Aromatic |
| C2 | N3 | sing | 1.32Å | 1.32Å | Aromatic |
| C2 | H2 | sing | 1.08Å | 1.08Å | |
| N3 | C4 | doub | 1.33Å | 1.34Å | Aromatic |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| S1P | P | O2P | 118.8° | 109.2° |
| S1P | P | O5' | 109.3° | 109.2° |
| S1P | P | O3' | 106.9° | 109.1° |
| O2P | P | O5' | 107.9° | 109.2° |
| O2P | P | O3' | 109.3° | 109.2° |
| P | O2P | HOP2 | 109.5° | 106.8° |
| O5' | P | O3' | 103.6° | 110.9° |
| P | O5' | C5' | 120.3° | 108.5° |
| P | O3' | C3' | 118.1° | 105.3° |
| O5' | C5' | C4' | 108.2° | 107.7° |
| O5' | C5' | H5'1 | 110.2° | 109.9° |
| O5' | C5' | H5'2 | 109.9° | 109.8° |
| C4' | C5' | H5'1 | 110.2° | 109.8° |
| C4' | C5' | H5'2 | 109.9° | 109.8° |
| C5' | C4' | O4' | 114.4° | 115.8° |
| C5' | C4' | C3' | 112.3° | 108.2° |
| C5' | C4' | H4' | 102.0° | 109.8° |
| H5'1 | C5' | H5'2 | 108.5° | 109.9° |
| O4' | C4' | C3' | 102.1° | 102.9° |
| O4' | C4' | H4' | 112.2° | 109.9° |
| C4' | O4' | C1' | 108.0° | 105.6° |
| C3' | C4' | H4' | 114.3° | 109.9° |
| C4' | C3' | O3' | 104.5° | 107.4° |
| C4' | C3' | C2' | 101.4° | 101.2° |
| C4' | C3' | H3' | 121.1° | 110.3° |
| O4' | C1' | C2' | 107.5° | 107.3° |
| O4' | C1' | N9 | 108.2° | 109.9° |
| O4' | C1' | H1' | 113.8° | 109.9° |
| O3' | C3' | C2' | 118.8° | 115.4° |
| O3' | C3' | H3' | 104.5° | 110.7° |
| C2' | C3' | H3' | 107.5° | 111.3° |
| C3' | C2' | O2' | 114.3° | 110.6° |
| C3' | C2' | C1' | 100.7° | 103.1° |
| C3' | C2' | H2' | 111.7° | 110.7° |
| O2' | C2' | C1' | 108.2° | 111.3° |
| O2' | C2' | H2' | 104.7° | 110.6° |
| C2' | O2' | HO2' | 109.5° | 106.8° |
| C1' | C2' | H2' | 117.5° | 110.3° |
| C2' | C1' | N9 | 115.4° | 109.9° |
| C2' | C1' | H1' | 106.4° | 109.9° |
| N9 | C1' | H1' | 105.7° | 109.9° |
| C1' | N9 | C8 | 126.3° | 126.3° |
| C1' | N9 | C4 | 127.8° | 126.2° |
| C8 | N9 | C4 | 105.9° | 107.5° |
| N9 | C8 | N7 | 113.6° | 110.0° |
| N9 | C8 | H8 | 123.2° | 125.0° |
| N9 | C4 | C5 | 105.6° | 106.0° |
| N9 | C4 | N3 | 127.7° | 135.0° |
| N7 | C8 | H8 | 123.2° | 125.1° |
| C8 | N7 | C5 | 104.0° | 109.5° |
| N7 | C5 | C6 | 132.1° | 134.7° |
| N7 | C5 | C4 | 110.9° | 107.1° |
| C6 | C5 | C4 | 117.1° | 118.2° |
| C5 | C6 | N6 | 123.1° | 120.8° |
| C5 | C6 | N1 | 117.9° | 118.5° |
| C5 | C4 | N3 | 126.7° | 119.1° |
| N6 | C6 | N1 | 119.0° | 120.8° |
| C6 | N6 | HN61 | 109.5° | 119.9° |
| C6 | N6 | HN62 | 109.5° | 120.0° |
| C6 | N1 | C2 | 118.5° | 121.2° |
| HN61 | N6 | HN62 | 109.4° | 120.1° |
| N1 | C2 | N3 | 129.1° | 122.4° |
| N1 | C2 | H2 | 115.5° | 118.7° |
| N3 | C2 | H2 | 115.4° | 118.8° |
| C2 | N3 | C4 | 110.7° | 120.7° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| S1P | P | O2P | O5' | 125.1° | 119.3° |
| S1P | P | O2P | O3' | 123.0° | 119.3° |
| S1P | P | O5' | O3' | 113.7° | 120.3° |
| S1P | P | O2P | HOP2 | 28.2° | 59.3° |
| S1P | P | O5' | C5' | 152.8° | 175.5° |
| S1P | P | O3' | C3' | 162.0° | 178.1° |
| O2P | P | O5' | O3' | 115.8° | 120.4° |
| O2P | P | O5' | C5' | 76.7° | 65.2° |
| O2P | P | O3' | C3' | 68.2° | 62.6° |
| O5' | P | O2P | HOP2 | 153.2° | 60.0° |
| P | O5' | C5' | C4' | 48.7° | 59.2° |
| P | O5' | C5' | H5'1 | 71.8° | 60.3° |
| P | O5' | C5' | H5'2 | 168.7° | 178.7° |
| O5' | P | O3' | C3' | 46.6° | 57.8° |
| O3' | P | O2P | HOP2 | 94.8° | 178.6° |
| O3' | P | O5' | C5' | 39.1° | 55.2° |
| P | O3' | C3' | C4' | 61.5° | 64.6° |
| P | O3' | C3' | C2' | 173.5° | 176.6° |
| P | O3' | C3' | H3' | 66.7° | 55.9° |
| O5' | C5' | C4' | H5'1 | 120.5° | 119.6° |
| O5' | C5' | C4' | H5'2 | 120.0° | 119.5° |
| O5' | C5' | H5'1 | H5'2 | 120.4° | 120.9° |
| O5' | C5' | C4' | O4' | 177.6° | 176.9° |
| O5' | C5' | C4' | C3' | 61.8° | 68.2° |
| O5' | C5' | C4' | H4' | 61.0° | 51.7° |
| C4' | C5' | H5'1 | H5'2 | 120.3° | 120.9° |
| C5' | C4' | O4' | C3' | 121.6° | 117.8° |
| C5' | C4' | O4' | H4' | 115.6° | 125.1° |
| C5' | C4' | C3' | H4' | 115.6° | 119.9° |
| C5' | C4' | O4' | C1' | 157.1° | 161.2° |
| C5' | C4' | C3' | O3' | 67.9° | 72.9° |
| C5' | C4' | C3' | C2' | 168.0° | 165.7° |
| C5' | C4' | C3' | H3' | 49.3° | 47.8° |
| H5'1 | C5' | C4' | O4' | 57.1° | 63.5° |
| H5'1 | C5' | C4' | C3' | 58.7° | 51.3° |
| H5'1 | C5' | C4' | H4' | 178.5° | 171.3° |
| H5'2 | C5' | C4' | O4' | 62.4° | 57.4° |
| H5'2 | C5' | C4' | C3' | 178.2° | 172.3° |
| H5'2 | C5' | C4' | H4' | 59.0° | 67.8° |
| O4' | C4' | C3' | H4' | 121.4° | 117.1° |
| O4' | C4' | C3' | O3' | 169.1° | 164.0° |
| O4' | C4' | C3' | C2' | 45.0° | 42.7° |
| O4' | C4' | C3' | H3' | 73.7° | 75.2° |
| C4' | O4' | C1' | C2' | 11.6° | 26.8° |
| C4' | O4' | C1' | N9 | 136.8° | 146.2° |
| C4' | O4' | C1' | H1' | 106.1° | 92.7° |
| C3' | C4' | O4' | C1' | 35.5° | 43.4° |
| C4' | C3' | O3' | C2' | 112.0° | 111.9° |
| C4' | C3' | O3' | H3' | 128.2° | 120.5° |
| C4' | C3' | C2' | H3' | 128.0° | 117.2° |
| C4' | C3' | C2' | O2' | 78.8° | 93.6° |
| C4' | C3' | C2' | C1' | 37.0° | 25.5° |
| C4' | C3' | C2' | H2' | 162.5° | 143.5° |
| H4' | C4' | O4' | C1' | 87.3° | 73.6° |
| H4' | C4' | C3' | O3' | 47.6° | 47.0° |
| H4' | C4' | C3' | C2' | 76.4° | 74.4° |
| H4' | C4' | C3' | H3' | 164.9° | 167.7° |
| O4' | C1' | C2' | C3' | 16.6° | 1.0° |
| O4' | C1' | C2' | O2' | 103.6° | 117.6° |
| O4' | C1' | C2' | N9 | 120.9° | 119.4° |
| O4' | C1' | C2' | H1' | 122.3° | 119.4° |
| O4' | C1' | C2' | H2' | 138.2° | 119.2° |
| O4' | C1' | N9 | H1' | 122.3° | 121.1° |
| O4' | C1' | N9 | C8 | 106.3° | 23.2° |
| O4' | C1' | N9 | C4 | 74.0° | 156.8° |
| O3' | C3' | C2' | H3' | 118.2° | 127.3° |
| O3' | C3' | C2' | O2' | 35.0° | 22.0° |
| O3' | C3' | C2' | C1' | 150.7° | 141.0° |
| O3' | C3' | C2' | H2' | 83.7° | 101.0° |
| C3' | C2' | O2' | C1' | 111.3° | 114.0° |
| C3' | C2' | O2' | H2' | 122.6° | 123.0° |
| C3' | C2' | C1' | H2' | 121.6° | 118.2° |
| C3' | C2' | O2' | HO2' | 105.4° | 180.0° |
| C3' | C2' | C1' | N9 | 104.2° | 118.4° |
| C3' | C2' | C1' | H1' | 138.9° | 120.4° |
| H3' | C3' | C2' | O2' | 153.2° | 149.3° |
| H3' | C3' | C2' | C1' | 91.1° | 91.7° |
| H3' | C3' | C2' | H2' | 34.5° | 26.3° |
| O2' | C2' | C1' | H2' | 118.2° | 123.2° |
| O2' | C2' | C1' | N9 | 135.5° | 122.9° |
| O2' | C2' | C1' | H1' | 18.7° | 1.8° |
| C1' | C2' | O2' | HO2' | 6.0° | 66.0° |
| C2' | C1' | N9 | H1' | 117.3° | 121.1° |
| C2' | C1' | N9 | C8 | 133.3° | 94.6° |
| C2' | C1' | N9 | C4 | 46.4° | 85.4° |
| H2' | C2' | O2' | HO2' | 132.0° | 57.0° |
| H2' | C2' | C1' | N9 | 17.4° | 0.2° |
| H2' | C2' | C1' | H1' | 99.5° | 121.4° |
| C1' | N9 | C8 | C4 | 179.8° | 180.0° |
| C1' | N9 | C8 | N7 | 179.3° | 180.0° |
| C1' | N9 | C8 | H8 | 0.7° | 0.0° |
| C1' | N9 | C4 | C5 | 179.0° | 179.7° |
| C1' | N9 | C4 | N3 | 0.7° | 0.0° |
| H1' | C1' | N9 | C8 | 16.0° | 144.2° |
| H1' | C1' | N9 | C4 | 163.7° | 35.7° |
| N9 | C8 | N7 | H8 | 180.0° | 180.0° |
| N9 | C8 | N7 | C5 | 0.0° | 0.3° |
| C8 | N9 | C4 | C5 | 0.8° | 0.3° |
| C8 | N9 | C4 | N3 | 179.5° | 180.0° |
| C4 | N9 | C8 | N7 | 0.5° | 0.0° |
| C4 | N9 | C8 | H8 | 179.5° | 180.0° |
| N9 | C4 | C5 | N7 | 0.8° | 0.4° |
| N9 | C4 | C5 | C6 | 178.6° | 179.7° |
| N9 | C4 | C5 | N3 | 179.7° | 179.8° |
| N9 | C4 | N3 | C2 | 179.4° | 180.0° |
| C8 | N7 | C5 | C6 | 178.8° | 179.5° |
| C8 | N7 | C5 | C4 | 0.5° | 0.5° |
| H8 | C8 | N7 | C5 | 180.0° | 179.8° |
| N7 | C5 | C6 | C4 | 179.3° | 178.9° |
| N7 | C5 | C6 | N6 | 1.5° | 0.7° |
| N7 | C5 | C6 | N1 | 179.4° | 179.5° |
| N7 | C5 | C4 | N3 | 179.5° | 179.8° |
| C5 | C6 | N6 | N1 | 179.2° | 179.8° |
| C5 | C6 | N6 | HN61 | 33.9° | 179.7° |
| C5 | C6 | N6 | HN62 | 153.8° | 0.6° |
| C5 | C6 | N1 | C2 | 0.9° | 0.2° |
| C6 | C5 | C4 | N3 | 1.1° | 0.6° |
| C4 | C5 | C6 | N6 | 177.8° | 179.7° |
| C4 | C5 | C6 | N1 | 1.4° | 0.5° |
| C5 | C4 | N3 | C2 | 0.2° | 0.3° |
| C6 | N6 | HN61 | HN62 | 120.0° | 179.7° |
| N6 | C6 | N1 | C2 | 178.3° | 180.0° |
| N1 | C6 | N6 | HN61 | 145.3° | 0.0° |
| N1 | C6 | N6 | HN62 | 25.3° | 179.7° |
| C6 | N1 | C2 | N3 | 0.0° | 0.0° |
| C6 | N1 | C2 | H2 | 180.0° | 180.0° |
| N1 | C2 | N3 | H2 | 180.0° | 180.0° |
| N1 | C2 | N3 | C4 | 0.4° | 0.0° |
| H2 | C2 | N3 | C4 | 179.6° | 180.0° |
