Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| C1' | O1' | sing | 1.44Å | 1.44Å | |
| C1' | C2' | sing | 1.54Å | 1.64Å | |
| C1' | H1'1 | sing | 1.09Å | 1.10Å | |
| C1' | H1'2 | sing | 1.09Å | 1.10Å | |
| O1' | C4' | sing | 1.44Å | 1.53Å | |
| C2' | O2' | sing | 1.43Å | 1.42Å | |
| C2' | C3' | sing | 1.55Å | 1.59Å | |
| C2' | H2' | sing | 1.09Å | 1.10Å | |
| O2' | HO2' | sing | 0.97Å | 0.95Å | |
| C3' | O3' | sing | 1.43Å | 1.45Å | |
| C3' | C4' | sing | 1.55Å | 1.57Å | |
| C3' | H3' | sing | 1.09Å | 1.10Å | |
| O3' | HO3' | sing | 0.97Å | 0.95Å | |
| C4' | C5' | sing | 1.53Å | 1.49Å | |
| C4' | H4' | sing | 1.09Å | 1.10Å | |
| C5' | O5' | sing | 1.43Å | 1.51Å | |
| C5' | H5'1 | sing | 1.09Å | 1.10Å | |
| C5' | H5'2 | sing | 1.09Å | 1.10Å | |
| O5' | P' | sing | 1.61Å | 1.76Å | |
| P' | O1X | doub | 1.48Å | 1.55Å | |
| P' | O2X | sing | 1.61Å | 1.55Å | |
| P' | O3X | sing | 1.61Å | 1.51Å | |
| O2X | HOP2 | sing | 0.97Å | 0.95Å | |
| O3X | HOP3 | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O1' | C1' | C2' | 98.9° | 107.3° |
| O1' | C1' | H1'1 | 113.2° | 109.9° |
| O1' | C1' | H1'2 | 115.4° | 109.9° |
| C1' | O1' | C4' | 118.3° | 107.0° |
| C2' | C1' | H1'1 | 113.2° | 109.8° |
| C2' | C1' | H1'2 | 115.3° | 109.8° |
| C1' | C2' | O2' | 111.5° | 110.5° |
| C1' | C2' | C3' | 107.5° | 104.2° |
| C1' | C2' | H2' | 110.8° | 110.5° |
| H1'1 | C1' | H1'2 | 101.6° | 110.0° |
| O1' | C4' | C3' | 104.1° | 103.5° |
| O1' | C4' | C5' | 100.3° | 110.6° |
| O1' | C4' | H4' | 122.8° | 110.7° |
| O2' | C2' | C3' | 113.1° | 110.5° |
| O2' | C2' | H2' | 104.9° | 110.5° |
| C2' | O2' | HO2' | 109.5° | 106.9° |
| C3' | C2' | H2' | 109.0° | 110.6° |
| C2' | C3' | O3' | 106.9° | 110.9° |
| C2' | C3' | C4' | 102.7° | 102.1° |
| C2' | C3' | H3' | 116.0° | 110.9° |
| O3' | C3' | C4' | 111.4° | 110.9° |
| O3' | C3' | H3' | 108.0° | 110.8° |
| C3' | O3' | HO3' | 109.5° | 106.8° |
| C4' | C3' | H3' | 111.8° | 110.9° |
| C3' | C4' | C5' | 120.6° | 110.6° |
| C3' | C4' | H4' | 103.4° | 110.8° |
| C5' | C4' | H4' | 107.1° | 110.5° |
| C4' | C5' | O5' | 121.2° | 109.5° |
| C4' | C5' | H5'1 | 105.8° | 109.4° |
| C4' | C5' | H5'2 | 103.0° | 109.5° |
| O5' | C5' | H5'1 | 105.7° | 109.4° |
| O5' | C5' | H5'2 | 103.0° | 109.5° |
| C5' | O5' | P' | 118.4° | 106.8° |
| H5'1 | C5' | H5'2 | 119.2° | 109.5° |
| O5' | P' | O1X | 115.0° | 109.5° |
| O5' | P' | O2X | 95.6° | 109.5° |
| O5' | P' | O3X | 102.1° | 109.5° |
| O1X | P' | O2X | 121.6° | 109.5° |
| O1X | P' | O3X | 114.3° | 109.5° |
| O2X | P' | O3X | 105.1° | 109.4° |
| P' | O2X | HOP2 | 109.5° | 106.8° |
| P' | O3X | HOP3 | 109.5° | 106.8° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O1' | C1' | C2' | H1'1 | 120.0° | 119.5° |
| O1' | C1' | C2' | H1'2 | 123.6° | 119.4° |
| O1' | C1' | H1'1 | H1'2 | 124.3° | 121.1° |
| O1' | C1' | C2' | O2' | 151.8° | 116.6° |
| O1' | C1' | C2' | C3' | 27.3° | 2.0° |
| O1' | C1' | C2' | H2' | 91.8° | 120.8° |
| C1' | O1' | C4' | C3' | 1.4° | 40.1° |
| C1' | O1' | C4' | C5' | 124.0° | 158.6° |
| C1' | O1' | C4' | H4' | 117.9° | 78.6° |
| C2' | C1' | H1'1 | H1'2 | 124.2° | 121.0° |
| C2' | C1' | O1' | C4' | 15.9° | 26.5° |
| C1' | C2' | O2' | C3' | 121.3° | 114.7° |
| C1' | C2' | O2' | H2' | 119.9° | 122.6° |
| C1' | C2' | C3' | H2' | 120.1° | 118.7° |
| C1' | C2' | O2' | HO2' | 8.4° | 61.5° |
| C1' | C2' | C3' | O3' | 146.4° | 97.3° |
| C1' | C2' | C3' | C4' | 29.0° | 20.9° |
| C1' | C2' | C3' | H3' | 93.2° | 139.1° |
| H1'1 | C1' | O1' | C4' | 104.1° | 92.9° |
| H1'1 | C1' | C2' | O2' | 31.8° | 123.9° |
| H1'1 | C1' | C2' | C3' | 92.7° | 117.4° |
| H1'1 | C1' | C2' | H2' | 148.2° | 1.3° |
| H1'2 | C1' | O1' | C4' | 139.5° | 145.9° |
| H1'2 | C1' | C2' | O2' | 84.6° | 2.8° |
| H1'2 | C1' | C2' | C3' | 150.9° | 121.4° |
| H1'2 | C1' | C2' | H2' | 31.8° | 119.8° |
| O1' | C4' | C3' | C2' | 18.7° | 37.0° |
| O1' | C4' | C3' | O3' | 132.8° | 81.2° |
| O1' | C4' | C3' | C5' | 111.2° | 118.5° |
| O1' | C4' | C3' | H4' | 129.4° | 118.6° |
| O1' | C4' | C3' | H3' | 106.3° | 155.2° |
| O1' | C4' | C5' | H4' | 129.2° | 122.9° |
| O1' | C4' | C5' | O5' | 70.9° | 66.4° |
| O1' | C4' | C5' | H5'1 | 169.1° | 53.5° |
| O1' | C4' | C5' | H5'2 | 43.3° | 173.5° |
| O2' | C2' | C3' | H2' | 116.3° | 122.6° |
| O2' | C2' | C3' | O3' | 90.1° | 21.3° |
| O2' | C2' | C3' | C4' | 152.6° | 139.5° |
| O2' | C2' | C3' | H3' | 30.3° | 102.3° |
| C3' | C2' | O2' | HO2' | 129.7° | 176.2° |
| C2' | C3' | O3' | C4' | 111.5° | 112.7° |
| C2' | C3' | O3' | H3' | 125.4° | 123.6° |
| C2' | C3' | C4' | H3' | 125.0° | 118.2° |
| C2' | C3' | O3' | HO3' | 97.5° | 67.3° |
| C2' | C3' | C4' | C5' | 92.4° | 155.6° |
| C2' | C3' | C4' | H4' | 148.1° | 81.6° |
| H2' | C2' | O2' | HO2' | 111.5° | 61.1° |
| H2' | C2' | C3' | O3' | 26.3° | 144.0° |
| H2' | C2' | C3' | C4' | 91.1° | 97.8° |
| H2' | C2' | C3' | H3' | 146.7° | 20.3° |
| O3' | C3' | C4' | H3' | 120.9° | 123.6° |
| O3' | C3' | C4' | C5' | 21.6° | 37.3° |
| O3' | C3' | C4' | H4' | 97.8° | 160.2° |
| C4' | C3' | O3' | HO3' | 151.1° | 180.0° |
| C3' | C4' | C5' | H4' | 117.6° | 123.0° |
| C3' | C4' | C5' | O5' | 175.9° | 179.5° |
| C3' | C4' | C5' | H5'1 | 55.9° | 60.6° |
| C3' | C4' | C5' | H5'2 | 69.9° | 59.5° |
| H3' | C3' | O3' | HO3' | 27.9° | 56.4° |
| H3' | C3' | C4' | C5' | 142.5° | 86.3° |
| H3' | C3' | C4' | H4' | 23.1° | 36.6° |
| C4' | C5' | O5' | H5'1 | 120.0° | 120.0° |
| C4' | C5' | O5' | H5'2 | 114.2° | 120.0° |
| C4' | C5' | H5'1 | H5'2 | 115.2° | 120.0° |
| C4' | C5' | O5' | P' | 150.1° | 180.0° |
| H4' | C4' | C5' | O5' | 58.3° | 56.5° |
| H4' | C4' | C5' | H5'1 | 61.7° | 176.4° |
| H4' | C4' | C5' | H5'2 | 172.5° | 63.6° |
| O5' | C5' | H5'1 | H5'2 | 115.2° | 120.0° |
| C5' | O5' | P' | O1X | 175.0° | 55.0° |
| C5' | O5' | P' | O2X | 46.1° | 175.0° |
| C5' | O5' | P' | O3X | 60.7° | 65.0° |
| H5'1 | C5' | O5' | P' | 30.1° | 60.0° |
| H5'2 | C5' | O5' | P' | 95.7° | 60.0° |
| O5' | P' | O1X | O2X | 114.4° | 120.0° |
| O5' | P' | O1X | O3X | 117.7° | 120.0° |
| O5' | P' | O2X | O3X | 104.1° | 120.0° |
| O5' | P' | O2X | HOP2 | 99.6° | 180.0° |
| O5' | P' | O3X | HOP3 | 103.2° | 59.9° |
| O1X | P' | O2X | O3X | 131.9° | 120.0° |
| O1X | P' | O2X | HOP2 | 24.4° | 60.0° |
| O1X | P' | O3X | HOP3 | 131.9° | 180.0° |
| O2X | P' | O3X | HOP3 | 4.0° | 60.0° |
| O3X | P' | O2X | HOP2 | 156.3° | 60.0° |
