RNA

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C	C1	sing	1.42Å	1.38Å	Aromatic
C	C3	doub	1.38Å	1.39Å	Aromatic
C	H	sing	1.08Å	1.08Å
C1	C2	doub	1.36Å	1.40Å	Aromatic
C1	H1	sing	1.08Å	1.08Å
C2	C16	sing	1.44Å	1.52Å
C2	O	sing	1.35Å	1.38Å	Aromatic
O	C3	sing	1.36Å	1.38Å	Aromatic
C3	C4	sing	1.47Å	1.51Å
C4	H41	sing	1.10Å	1.10Å
C4	H42	sing	1.11Å	1.10Å
C4	H43	sing	1.11Å	1.10Å
C5	C15	sing	1.49Å	1.38Å
C5	C16	doub	1.33Å	1.55Å
C5	S	sing	1.71Å	1.75Å
S	C6	sing	1.76Å	1.72Å
C6	N	sing	1.41Å	1.41Å
C6	N1	doub	1.30Å	1.36Å
N	S1	sing	1.70Å	1.71Å
N	HN	sing	1.03Å	1.00Å
S1	C7	sing	1.75Å	1.74Å
S1	O14	doub	1.46Å	1.59Å
S1	O1	doub	1.46Å	1.59Å
C7	C12	doub	1.39Å	1.42Å	Aromatic
C7	C8	sing	1.39Å	1.41Å	Aromatic
C8	C9	doub	1.39Å	1.42Å	Aromatic
C8	H8	sing	1.09Å	1.08Å
C9	C10	sing	1.40Å	1.43Å	Aromatic
C9	H9	sing	1.09Å	1.08Å
C10	C13	sing	1.49Å	1.53Å
C10	C11	doub	1.39Å	1.43Å	Aromatic
C11	C12	sing	1.39Å	1.42Å	Aromatic
C11	H11	sing	1.09Å	1.08Å
C12	H12	sing	1.09Å	1.08Å
C13	H131	sing	1.10Å	1.10Å
C13	H132	sing	1.10Å	1.10Å
C13	H133	sing	1.10Å	1.10Å
C15	N1	sing	1.38Å	1.37Å
C15	O2	doub	1.22Å	1.38Å
C16	H16	sing	1.09Å	1.08Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C1	C	C3	108.0°	106.1°
C1	C	H	126.0°	127.4°
C	C1	C2	108.0°	105.4°
C	C1	H1	126.0°	127.1°
C3	C	H	126.0°	126.5°
C	C3	O	108.0°	110.6°
C	C3	C4	127.0°	133.2°
C2	C1	H1	126.0°	127.5°
C1	C2	C16	127.5°	126.6°
C1	C2	O	107.6°	112.0°
C16	C2	O	124.9°	121.4°
C2	C16	C5	114.1°	124.7°
C2	C16	H16	123.0°	117.6°
C2	O	C3	108.4°	105.9°
O	C3	C4	125.0°	116.3°
C3	C4	H41	109.5°	111.4°
C3	C4	H42	109.5°	112.3°
C3	C4	H43	109.5°	112.3°
H41	C4	H42	109.5°	107.3°
H41	C4	H43	109.4°	107.4°
H42	C4	H43	109.5°	105.8°
C15	C5	C16	126.8°	123.9°
C15	C5	S	111.4°	110.1°
C5	C15	N1	114.8°	111.2°
C5	C15	O2	123.4°	123.3°
C16	C5	S	121.7°	126.1°
C5	C16	H16	122.9°	117.7°
C5	S	C6	88.0°	89.8°
S	C6	N	121.5°	117.9°
S	C6	N1	115.8°	115.3°
N	C6	N1	122.7°	126.8°
C6	N	S1	123.0°	117.7°
C6	N	HN	118.5°	119.0°
C6	N1	C15	110.0°	113.7°
S1	N	HN	118.5°	123.2°
N	S1	C7	110.6°	101.3°
N	S1	O14	105.9°	109.2°
N	S1	O1	109.2°	109.1°
C7	S1	O14	110.9°	108.2°
C7	S1	O1	111.1°	108.2°
S1	C7	C12	118.5°	120.0°
S1	C7	C8	119.7°	120.0°
O14	S1	O1	109.0°	119.3°
C12	C7	C8	121.8°	120.0°
C7	C12	C11	119.2°	120.0°
C7	C12	H12	120.4°	120.6°
C7	C8	C9	118.9°	120.1°
C7	C8	H8	120.6°	120.6°
C9	C8	H8	120.6°	119.4°
C8	C9	C10	120.5°	119.9°
C8	C9	H9	119.8°	119.5°
C10	C9	H9	119.7°	120.5°
C9	C10	C13	120.7°	120.0°
C9	C10	C11	119.5°	120.0°
C13	C10	C11	119.8°	120.0°
C10	C13	H131	109.5°	110.4°
C10	C13	H132	109.5°	111.3°
C10	C13	H133	109.4°	111.3°
C10	C11	C12	120.1°	120.0°
C10	C11	H11	119.9°	120.5°
C12	C11	H11	120.0°	119.5°
C11	C12	H12	120.4°	119.4°
H131	C13	H132	109.5°	108.5°
H131	C13	H133	109.5°	108.5°
H132	C13	H133	109.5°	106.8°
N1	C15	O2	121.8°	125.5°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
C1	C	C3	H	180.0°	180.0°
C	C1	C2	H1	180.0°	179.9°
C	C1	C2	C16	179.6°	179.9°
C	C1	C2	O	0.2°	0.0°
C1	C	C3	O	0.1°	0.0°
C1	C	C3	C4	179.5°	180.0°
C3	C	C1	C2	0.1°	0.0°
C3	C	C1	H1	179.9°	179.9°
C	C3	O	C2	0.3°	0.0°
C	C3	O	C4	179.6°	180.0°
C	C3	C4	H41	134.9°	27.1°
C	C3	C4	H42	105.1°	93.4°
C	C3	C4	H43	15.0°	147.6°
H	C	C1	C2	179.9°	180.0°
H	C	C1	H1	0.1°	0.1°
H	C	C3	O	179.9°	180.0°
H	C	C3	C4	0.5°	0.0°
C1	C2	C16	O	179.8°	179.9°
C1	C2	O	C3	0.3°	0.0°
C1	C2	C16	C5	57.5°	148.3°
C1	C2	C16	H16	122.5°	29.9°
H1	C1	C2	C16	0.4°	0.2°
H1	C1	C2	O	179.8°	179.9°
C16	C2	O	C3	179.6°	179.9°
C2	C16	C5	C15	139.0°	179.9°
C2	C16	C5	H16	180.0°	178.2°
C2	C16	C5	S	41.0°	0.1°
C2	O	C3	C4	179.4°	180.0°
O	C2	C16	C5	122.3°	31.8°
O	C2	C16	H16	57.7°	150.0°
O	C3	C4	H41	45.5°	152.9°
O	C3	C4	H42	74.5°	86.6°
O	C3	C4	H43	165.5°	32.4°
C3	C4	H41	H42	120.0°	123.3°
C3	C4	H41	H43	120.0°	123.4°
C3	C4	H42	H43	120.0°	122.8°
H41	C4	H42	H43	120.0°	114.4°
C15	C5	C16	S	179.9°	180.0°
C15	C5	S	C6	0.3°	0.0°
C5	C15	N1	C6	0.1°	0.0°
C5	C15	N1	O2	179.8°	179.9°
C15	C5	C16	H16	41.0°	1.8°
C16	C5	S	C6	179.7°	180.0°
C16	C5	C15	N1	179.6°	180.0°
C16	C5	C15	O2	0.1°	0.1°
C5	S	C6	N	179.7°	180.0°
C5	S	C6	N1	0.2°	0.0°
S	C5	C15	N1	0.3°	0.0°
S	C5	C15	O2	179.9°	179.9°
S	C5	C16	H16	139.0°	178.2°
S	C6	N	N1	179.9°	180.0°
S	C6	N	S1	28.3°	179.7°
S	C6	N	HN	151.7°	0.0°
S	C6	N1	C15	0.1°	0.0°
C6	N	S1	HN	180.0°	179.7°
C6	N	S1	C7	53.8°	83.0°
C6	N	S1	O14	66.4°	31.0°
C6	N	S1	O1	176.4°	163.0°
N	C6	N1	C15	179.8°	180.0°
N1	C6	N	S1	151.6°	0.3°
N1	C6	N	HN	28.4°	180.0°
C6	N1	C15	O2	179.9°	179.9°
N	S1	C7	O14	117.2°	114.7°
N	S1	C7	O1	121.4°	114.6°
N	S1	O14	O1	117.4°	126.3°
N	S1	C7	C12	71.1°	90.1°
N	S1	C7	C8	109.1°	90.0°
HN	N	S1	C7	126.2°	97.3°
HN	N	S1	O14	113.6°	148.7°
HN	N	S1	O1	3.6°	16.7°
C7	S1	O14	O1	122.6°	124.2°
S1	C7	C12	C8	179.9°	179.9°
S1	C7	C8	C9	179.9°	180.0°
S1	C7	C8	H8	0.1°	0.1°
S1	C7	C12	C11	180.0°	180.0°
S1	C7	C12	H12	0.1°	0.0°
O14	S1	C7	C12	171.8°	24.7°
O14	S1	C7	C8	8.1°	155.3°
O1	S1	C7	C12	50.4°	155.3°
O1	S1	C7	C8	129.5°	24.6°
C12	C7	C8	C9	0.0°	0.0°
C12	C7	C8	H8	180.0°	179.9°
C7	C12	C11	C10	0.2°	NaN°
C7	C12	C11	H12	180.0°	180.0°
C7	C12	C11	H11	179.8°	180.0°
C7	C8	C9	H8	180.0°	179.9°
C7	C8	C9	C10	0.0°	0.0°
C7	C8	C9	H9	180.0°	179.9°
C8	C7	C12	C11	0.1°	0.0°
C8	C7	C12	H12	179.9°	179.9°
C8	C9	C10	H9	180.0°	179.9°
C8	C9	C10	C13	179.8°	180.0°
C8	C9	C10	C11	0.1°	0.1°
H8	C8	C9	C10	180.0°	179.9°
H8	C8	C9	H9	0.0°	0.0°
C9	C10	C13	C11	179.8°	179.9°
C9	C10	C11	C12	0.1°	0.1°
C9	C10	C11	H11	179.8°	179.9°
C9	C10	C13	H131	106.2°	50.5°
C9	C10	C13	H132	13.8°	171.0°
C9	C10	C13	H133	133.8°	70.0°
H9	C9	C10	C13	0.2°	0.1°
H9	C9	C10	C11	179.9°	180.0°
C13	C10	C11	C12	179.7°	180.0°
C13	C10	C11	H11	0.3°	0.0°
C10	C13	H131	H132	120.0°	122.2°
C10	C13	H131	H133	120.0°	122.2°
C10	C13	H132	H133	120.0°	121.7°
C10	C11	C12	H11	180.0°	180.0°
C10	C11	C12	H12	179.9°	180.0°
C11	C10	C13	H131	73.6°	129.6°
C11	C10	C13	H132	166.4°	9.0°
C11	C10	C13	H133	46.4°	109.9°
H11	C11	C12	H12	0.1°	0.0°
H131	C13	H132	H133	120.0°	116.7°

Definition date:	2006-08-02
Last modified:	2020-06-17
Release status:	REL
Processing site:	RCSB
Derived from:	2HWH