RMP
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| P | CMP | sing | 1.78Å | 1.77Å | |
| P | OP1 | doub | 1.50Å | 1.48Å | |
| P | O5' | sing | 1.62Å | 1.58Å | |
| P | OP3 | sing | 1.62Å | 11.14Å | |
| CMP | HMP1 | sing | 1.09Å | 1.10Å | |
| CMP | HMP2 | sing | 1.09Å | 1.10Å | |
| CMP | HMP3 | sing | 1.09Å | 1.10Å | |
| O5' | C5' | sing | 1.42Å | 1.39Å | |
| C5' | C4' | sing | 1.52Å | 1.50Å | |
| C5' | H5' | sing | 1.09Å | 1.07Å | |
| C5' | H5'' | sing | 1.09Å | 1.08Å | |
| C4' | O4' | sing | 1.44Å | 1.41Å | |
| C4' | C3' | sing | 1.52Å | 1.53Å | |
| C4' | H4' | sing | 1.10Å | 1.08Å | |
| O4' | C1' | sing | 1.44Å | 1.41Å | |
| C1' | N9 | sing | 1.46Å | 1.48Å | |
| C1' | C2' | sing | 1.52Å | 1.51Å | |
| C1' | H1' | sing | 1.09Å | 1.10Å | |
| N9 | C8 | sing | 1.37Å | 1.37Å | Aromatic |
| N9 | C4 | sing | 1.37Å | 1.37Å | Aromatic |
| C8 | N7 | doub | 1.32Å | 1.31Å | Aromatic |
| C8 | H8 | sing | 1.08Å | 1.07Å | |
| N7 | C5 | sing | 1.37Å | 1.38Å | Aromatic |
| C5 | C6 | doub | 1.39Å | 1.41Å | Aromatic |
| C5 | C4 | sing | 1.39Å | 1.37Å | Aromatic |
| C6 | N6 | sing | 1.41Å | 1.32Å | |
| C6 | N1 | sing | 1.35Å | 1.33Å | Aromatic |
| N6 | H61 | sing | 1.00Å | 1.00Å | |
| N6 | H62 | sing | 1.00Å | 0.99Å | |
| N1 | C2 | doub | 1.35Å | 1.32Å | Aromatic |
| C2 | N3 | sing | 1.35Å | 1.33Å | Aromatic |
| C2 | H2 | sing | 1.08Å | 1.07Å | |
| N3 | C4 | doub | 1.34Å | 1.36Å | Aromatic |
| C3' | C2' | sing | 1.51Å | 1.53Å | |
| C3' | O3' | sing | 1.41Å | 1.41Å | |
| C3' | H3' | sing | 1.10Å | 1.07Å | |
| C2' | H2' | sing | 1.09Å | 1.07Å | |
| C2' | H2'' | sing | 1.10Å | 1.07Å | |
| O3' | HO3' | sing | 0.97Å | 0.95Å | |
| OP3 | HOP3 | sing | 0.98Å | 0.00Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| CMP | P | OP1 | 103.7° | 113.7° |
| CMP | P | O5' | 116.8° | 105.9° |
| CMP | P | OP3 | 155.3° | 104.1° |
| P | CMP | HMP1 | 109.5° | 110.1° |
| P | CMP | HMP2 | 109.5° | 110.1° |
| P | CMP | HMP3 | 109.4° | 110.1° |
| OP1 | P | O5' | 107.8° | 114.5° |
| OP1 | P | OP3 | 98.1° | 114.4° |
| O5' | P | OP3 | 43.8° | 103.0° |
| P | O5' | C5' | 121.5° | 121.0° |
| P | OP3 | HOP3 | 90.0° | 118.9° |
| HMP1 | CMP | HMP2 | 109.5° | 108.9° |
| HMP1 | CMP | HMP3 | 109.5° | 108.9° |
| HMP2 | CMP | HMP3 | 109.5° | 108.9° |
| O5' | C5' | C4' | 112.8° | 108.7° |
| O5' | C5' | H5' | 109.5° | 109.2° |
| O5' | C5' | H5'' | 109.4° | 109.2° |
| C4' | C5' | H5' | 107.8° | 110.1° |
| C4' | C5' | H5'' | 107.8° | 110.1° |
| C5' | C4' | O4' | 108.2° | 109.7° |
| C5' | C4' | C3' | 115.8° | 113.6° |
| C5' | C4' | H4' | 106.5° | 108.6° |
| H5' | C5' | H5'' | 109.5° | 109.6° |
| O4' | C4' | C3' | 106.8° | 105.5° |
| O4' | C4' | H4' | 109.6° | 108.2° |
| C4' | O4' | C1' | 110.6° | 108.1° |
| C3' | C4' | H4' | 109.8° | 111.1° |
| C4' | C3' | C2' | 102.7° | 101.8° |
| C4' | C3' | O3' | 107.0° | 112.4° |
| C4' | C3' | H3' | 110.9° | 111.5° |
| O4' | C1' | N9 | 111.2° | 109.4° |
| O4' | C1' | C2' | 103.9° | 107.7° |
| O4' | C1' | H1' | 109.9° | 109.1° |
| N9 | C1' | C2' | 113.9° | 113.8° |
| N9 | C1' | H1' | 109.0° | 105.1° |
| C1' | N9 | C8 | 129.3° | 126.2° |
| C1' | N9 | C4 | 126.3° | 127.0° |
| C2' | C1' | H1' | 108.7° | 111.7° |
| C1' | C2' | C3' | 102.6° | 103.2° |
| C1' | C2' | H2' | 108.7° | 114.1° |
| C1' | C2' | H2'' | 111.8° | 110.0° |
| C8 | N9 | C4 | 104.4° | 106.8° |
| N9 | C8 | N7 | 115.3° | 112.3° |
| N9 | C8 | H8 | 120.8° | 122.1° |
| N9 | C4 | C5 | 106.5° | 105.3° |
| N9 | C4 | N3 | 127.0° | 127.5° |
| N7 | C8 | H8 | 123.9° | 125.5° |
| C8 | N7 | C5 | 102.7° | 104.8° |
| N7 | C5 | C6 | 133.5° | 132.4° |
| N7 | C5 | C4 | 111.0° | 110.7° |
| C6 | C5 | C4 | 115.4° | 116.9° |
| C5 | C6 | N6 | 124.4° | 120.7° |
| C5 | C6 | N1 | 119.6° | 119.1° |
| C5 | C4 | N3 | 126.4° | 127.2° |
| N6 | C6 | N1 | 116.0° | 120.2° |
| C6 | N6 | H61 | 120.1° | 119.4° |
| C6 | N6 | H62 | 118.0° | 119.4° |
| C6 | N1 | C2 | 118.4° | 117.5° |
| H61 | N6 | H62 | 121.6° | 120.9° |
| N1 | C2 | N3 | 128.5° | 128.8° |
| N1 | C2 | H2 | 115.2° | 115.6° |
| N3 | C2 | H2 | 116.3° | 115.6° |
| C2 | N3 | C4 | 111.7° | 110.4° |
| C2' | C3' | O3' | 112.9° | 111.3° |
| C2' | C3' | H3' | 111.7° | 110.2° |
| C3' | C2' | H2' | 109.1° | 112.8° |
| C3' | C2' | H2'' | 113.6° | 109.9° |
| O3' | C3' | H3' | 111.2° | 109.4° |
| C3' | O3' | HO3' | 109.5° | 106.5° |
| H2' | C2' | H2'' | 110.6° | 106.8° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| CMP | P | OP1 | O5' | 124.5° | 121.9° |
| CMP | P | OP1 | OP3 | 168.4° | 119.5° |
| CMP | P | O5' | OP3 | 160.7° | 109.0° |
| P | CMP | HMP1 | HMP2 | 120.0° | 120.7° |
| P | CMP | HMP1 | HMP3 | 120.0° | 120.7° |
| P | CMP | HMP2 | HMP3 | 120.0° | 120.7° |
| CMP | P | O5' | C5' | 62.7° | 60.0° |
| CMP | P | OP3 | HOP3 | 90.0° | 130.8° |
| OP1 | P | O5' | OP3 | 83.1° | 124.9° |
| OP1 | P | CMP | HMP1 | 134.9° | 77.5° |
| OP1 | P | CMP | HMP2 | 105.1° | 162.5° |
| OP1 | P | CMP | HMP3 | 14.9° | 42.5° |
| OP1 | P | O5' | C5' | 178.9° | 66.1° |
| OP1 | P | OP3 | HOP3 | 90.0° | 6.1° |
| O5' | P | CMP | HMP1 | 106.7° | 155.9° |
| O5' | P | CMP | HMP2 | 13.3° | 35.9° |
| O5' | P | CMP | HMP3 | 133.3° | 84.1° |
| P | O5' | C5' | C4' | 179.6° | 150.0° |
| P | O5' | C5' | H5' | 59.5° | 29.9° |
| P | O5' | C5' | H5'' | 60.4° | 89.9° |
| O5' | P | OP3 | HOP3 | 90.0° | 118.9° |
| OP3 | P | CMP | HMP1 | 73.5° | 47.7° |
| OP3 | P | CMP | HMP2 | 46.5° | 72.3° |
| OP3 | P | CMP | HMP3 | 166.5° | 167.7° |
| OP3 | P | O5' | C5' | 98.0° | 169.0° |
| HMP1 | CMP | HMP2 | HMP3 | 120.0° | 118.5° |
| O5' | C5' | C4' | H5' | 121.0° | 119.6° |
| O5' | C5' | C4' | H5'' | 121.0° | 119.5° |
| O5' | C5' | H5' | H5'' | 120.0° | 119.5° |
| O5' | C5' | C4' | O4' | 65.3° | 61.8° |
| O5' | C5' | C4' | C3' | 54.5° | 179.5° |
| O5' | C5' | C4' | H4' | 177.0° | 56.3° |
| C4' | C5' | H5' | H5'' | 117.0° | 121.2° |
| C5' | C4' | O4' | C3' | 125.3° | 122.8° |
| C5' | C4' | O4' | H4' | 115.8° | 118.3° |
| C5' | C4' | C3' | H4' | 120.7° | 122.8° |
| C5' | C4' | O4' | C1' | 138.3° | 148.9° |
| C5' | C4' | C3' | C2' | 109.8° | 157.2° |
| C5' | C4' | C3' | O3' | 131.1° | 83.6° |
| C5' | C4' | C3' | H3' | 9.6° | 39.7° |
| H5' | C5' | C4' | O4' | 55.7° | 57.8° |
| H5' | C5' | C4' | C3' | 175.4° | 60.0° |
| H5' | C5' | C4' | H4' | 62.1° | 175.9° |
| H5'' | C5' | C4' | O4' | 173.8° | 178.7° |
| H5'' | C5' | C4' | C3' | 66.5° | 60.9° |
| H5'' | C5' | C4' | H4' | 56.0° | 63.3° |
| O4' | C4' | C3' | H4' | 118.8° | 117.0° |
| C4' | O4' | C1' | N9 | 154.6° | 128.8° |
| C4' | O4' | C1' | C2' | 31.7° | 4.6° |
| C4' | O4' | C1' | H1' | 84.5° | 116.8° |
| O4' | C4' | C3' | C2' | 10.8° | 37.0° |
| O4' | C4' | C3' | O3' | 108.4° | 156.2° |
| O4' | C4' | C3' | H3' | 130.2° | 80.5° |
| C3' | C4' | O4' | C1' | 13.0° | 26.2° |
| C4' | C3' | C2' | C1' | 28.4° | 33.0° |
| C4' | C3' | C2' | O3' | 114.9° | 119.9° |
| C4' | C3' | C2' | H3' | 118.8° | 118.4° |
| C4' | C3' | O3' | H3' | 121.3° | 124.5° |
| C4' | C3' | C2' | H2' | 86.8° | 156.6° |
| C4' | C3' | C2' | H2'' | 149.3° | 84.3° |
| C4' | C3' | O3' | HO3' | 0.5° | 62.3° |
| H4' | C4' | O4' | C1' | 105.9° | 92.8° |
| H4' | C4' | C3' | C2' | 129.5° | 80.0° |
| H4' | C4' | C3' | O3' | 10.4° | 39.2° |
| H4' | C4' | C3' | H3' | 111.1° | 162.5° |
| O4' | C1' | N9 | C2' | 117.0° | 120.5° |
| O4' | C1' | N9 | H1' | 121.4° | 117.1° |
| O4' | C1' | C2' | H1' | 117.0° | 119.8° |
| O4' | C1' | N9 | C8 | 51.5° | 33.0° |
| O4' | C1' | N9 | C4 | 129.2° | 147.0° |
| O4' | C1' | C2' | C3' | 36.7° | 18.6° |
| O4' | C1' | C2' | H2' | 78.7° | 141.4° |
| O4' | C1' | C2' | H2'' | 158.8° | 98.6° |
| N9 | C1' | C2' | H1' | 121.8° | 118.8° |
| C1' | N9 | C8 | C4 | 179.5° | 180.0° |
| C1' | N9 | C8 | N7 | 178.2° | 180.0° |
| C1' | N9 | C8 | H8 | 0.4° | 0.0° |
| C1' | N9 | C4 | C5 | 178.5° | 180.0° |
| C1' | N9 | C4 | N3 | 1.9° | 0.1° |
| N9 | C1' | C2' | C3' | 157.9° | 102.8° |
| N9 | C1' | C2' | H2' | 42.4° | 20.0° |
| N9 | C1' | C2' | H2'' | 80.0° | 140.0° |
| C2' | C1' | N9 | C8 | 65.5° | 87.5° |
| C2' | C1' | N9 | C4 | 113.8° | 92.5° |
| C1' | C2' | C3' | H2' | 115.2° | 123.7° |
| C1' | C2' | C3' | H2'' | 120.9° | 117.3° |
| C1' | C2' | C3' | O3' | 86.5° | 152.9° |
| C1' | C2' | C3' | H3' | 147.2° | 85.5° |
| C1' | C2' | H2' | H2'' | 123.2° | 121.8° |
| H1' | C1' | N9 | C8 | 172.9° | 150.0° |
| H1' | C1' | N9 | C4 | 7.8° | 29.9° |
| H1' | C1' | C2' | C3' | 80.3° | 138.4° |
| H1' | C1' | C2' | H2' | 164.2° | 98.8° |
| H1' | C1' | C2' | H2'' | 41.8° | 21.2° |
| N9 | C8 | N7 | H8 | 177.7° | 180.0° |
| N9 | C8 | N7 | C5 | 1.5° | 0.0° |
| C8 | N9 | C4 | C5 | 2.0° | 0.0° |
| C8 | N9 | C4 | N3 | 178.6° | 179.9° |
| C4 | N9 | C8 | N7 | 2.3° | 0.0° |
| C4 | N9 | C8 | H8 | 179.9° | 180.0° |
| N9 | C4 | C5 | N7 | 1.3° | 0.0° |
| N9 | C4 | C5 | C6 | 176.4° | 180.0° |
| N9 | C4 | C5 | N3 | 176.6° | 179.9° |
| N9 | C4 | N3 | C2 | 176.6° | 180.0° |
| C8 | N7 | C5 | C6 | 177.2° | 180.0° |
| C8 | N7 | C5 | C4 | 0.1° | 0.0° |
| H8 | C8 | N7 | C5 | 179.2° | 180.0° |
| N7 | C5 | C6 | C4 | 177.0° | 180.0° |
| N7 | C5 | C6 | N6 | 3.5° | 0.0° |
| N7 | C5 | C6 | N1 | 177.7° | 180.0° |
| N7 | C5 | C4 | N3 | 177.9° | 180.0° |
| C5 | C6 | N6 | N1 | 178.9° | 179.9° |
| C5 | C6 | N6 | H61 | 176.2° | 85.4° |
| C5 | C6 | N6 | H62 | 2.0° | 88.4° |
| C5 | C6 | N1 | C2 | 0.1° | 0.1° |
| C6 | C5 | C4 | N3 | 0.2° | 0.1° |
| C4 | C5 | C6 | N6 | 179.5° | 180.0° |
| C4 | C5 | C6 | N1 | 0.6° | 0.1° |
| C5 | C4 | N3 | C2 | 0.6° | 0.1° |
| C6 | N6 | H61 | H62 | 174.0° | 173.7° |
| N6 | C6 | N1 | C2 | 179.1° | 180.0° |
| N1 | C6 | N6 | H61 | 4.9° | 94.6° |
| N1 | C6 | N6 | H62 | 179.1° | 91.6° |
| C6 | N1 | C2 | N3 | 0.9° | 0.1° |
| C6 | N1 | C2 | H2 | 179.2° | 180.0° |
| N1 | C2 | N3 | H2 | 179.9° | 180.0° |
| N1 | C2 | N3 | C4 | 1.2° | 0.0° |
| H2 | C2 | N3 | C4 | 178.9° | 180.0° |
| C2' | C3' | O3' | H3' | 126.5° | 122.1° |
| C3' | C2' | H2' | H2'' | 125.7° | 120.9° |
| C2' | C3' | O3' | HO3' | 112.8° | 175.8° |
| O3' | C3' | C2' | H2' | 158.3° | 83.4° |
| O3' | C3' | C2' | H2'' | 34.4° | 35.7° |
| H3' | C3' | C2' | H2' | 32.1° | 38.2° |
| H3' | C3' | C2' | H2'' | 91.9° | 157.3° |
| H3' | C3' | O3' | HO3' | 120.7° | 62.1° |
