RMB

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
N3	C2	doub	1.30Å	1.34Å	Aromatic
N3	C3A	sing	1.36Å	1.38Å	Aromatic
N1	C2	sing	1.36Å	1.36Å	Aromatic
N1	C7A	sing	1.38Å	1.41Å	Aromatic
N1	C1'	sing	1.46Å	1.49Å
C2	H21	sing	1.08Å	1.10Å
C7A	C3A	doub	1.40Å	1.39Å	Aromatic
C7A	C7	sing	1.39Å	1.41Å	Aromatic
C3A	C4	sing	1.40Å	1.39Å	Aromatic
C4	C5	doub	1.37Å	1.39Å	Aromatic
C4	H41	sing	1.08Å	1.10Å
C5	C6	sing	1.39Å	1.42Å	Aromatic
C5	C8	sing	1.51Å	1.53Å
C6	C7	doub	1.38Å	1.39Å	Aromatic
C6	H61	sing	1.08Å	1.10Å
C7	H71	sing	1.08Å	1.10Å
C8	H81	sing	1.09Å	1.11Å
C8	H82	sing	1.09Å	1.11Å
C8	H83	sing	1.09Å	1.11Å
P	O1P	doub	1.48Å	1.49Å
P	O2P	sing	1.61Å	1.50Å
P	O3P	sing	1.61Å	1.49Å
P	O5'	sing	1.61Å	1.61Å
O2P	HOP2	sing	0.97Å	0.95Å
O3P	HOP3	sing	0.97Å	0.95Å
O5'	C5'	sing	1.43Å	1.44Å
C5'	C4'	sing	1.53Å	1.52Å
C5'	H5'1	sing	1.09Å	1.12Å
C5'	H5'2	sing	1.09Å	1.12Å
C4'	O4'	sing	1.43Å	1.46Å
C4'	C3'	sing	1.55Å	1.51Å
C4'	H4'	sing	1.09Å	1.11Å
O4'	C1'	sing	1.43Å	1.42Å
C3'	O3'	sing	1.43Å	1.43Å
C3'	C2'	sing	1.55Å	1.54Å
C3'	H3'	sing	1.09Å	1.12Å
O3'	HO3'	sing	0.97Å	0.95Å
C2'	O2'	sing	1.43Å	1.44Å
C2'	C1'	sing	1.54Å	1.52Å
C2'	H2'	sing	1.09Å	1.12Å
O2'	HO2'	sing	0.97Å	0.95Å
C1'	H1'	sing	1.09Å	1.12Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C2	N3	C3A	105.8°	109.6°
N3	C2	N1	114.5°	110.1°
N3	C2	H21	122.1°	124.9°
N3	C3A	C7A	107.6°	106.9°
N3	C3A	C4	131.1°	133.6°
C2	N1	C7A	103.2°	107.3°
C2	N1	C1'	128.6°	126.3°
N1	C2	H21	123.4°	125.0°
C7A	N1	C1'	128.2°	126.4°
N1	C7A	C3A	108.8°	106.0°
N1	C7A	C7	130.9°	134.1°
N1	C1'	O4'	113.7°	109.9°
N1	C1'	C2'	113.1°	109.8°
N1	C1'	H1'	102.2°	109.8°
C3A	C7A	C7	120.2°	119.8°
C7A	C3A	C4	121.3°	119.5°
C7A	C7	C6	118.8°	119.7°
C7A	C7	H71	121.2°	120.1°
C3A	C4	C5	118.9°	119.9°
C3A	C4	H41	120.7°	120.1°
C5	C4	H41	120.4°	120.0°
C4	C5	C6	120.2°	120.6°
C4	C5	C8	119.2°	119.7°
C6	C5	C8	120.5°	119.7°
C5	C6	C7	120.5°	120.5°
C5	C6	H61	120.9°	119.8°
C5	C8	H81	119.2°	109.5°
C5	C8	H82	108.6°	109.5°
C5	C8	H83	108.7°	109.5°
C7	C6	H61	118.6°	119.8°
C6	C7	H71	120.1°	120.2°
H81	C8	H82	108.8°	109.5°
H81	C8	H83	108.7°	109.5°
H82	C8	H83	101.4°	109.4°
O1P	P	O2P	119.9°	109.4°
O1P	P	O3P	110.3°	109.5°
O1P	P	O5'	103.3°	109.4°
O2P	P	O3P	114.2°	109.5°
O2P	P	O5'	107.0°	109.5°
P	O2P	HOP2	119.9°	106.8°
O3P	P	O5'	99.4°	109.5°
P	O3P	HOP3	110.3°	106.8°
P	O5'	C5'	121.0°	106.9°
O5'	C5'	C4'	109.4°	109.5°
O5'	C5'	H5'1	112.2°	109.5°
O5'	C5'	H5'2	112.2°	109.4°
C4'	C5'	H5'1	112.2°	109.6°
C4'	C5'	H5'2	112.3°	109.4°
C5'	C4'	O4'	110.9°	110.4°
C5'	C4'	C3'	114.2°	110.4°
C5'	C4'	H4'	103.7°	110.2°
H5'1	C5'	H5'2	98.1°	109.4°
O4'	C4'	C3'	104.7°	105.2°
O4'	C4'	H4'	113.4°	110.3°
C4'	O4'	C1'	110.7°	110.0°
C3'	C4'	H4'	110.1°	110.2°
C4'	C3'	O3'	112.6°	111.2°
C4'	C3'	C2'	97.8°	101.0°
C4'	C3'	H3'	115.8°	111.1°
O4'	C1'	C2'	103.3°	107.7°
O4'	C1'	H1'	112.1°	109.8°
O3'	C3'	C2'	111.8°	111.2°
O3'	C3'	H3'	102.8°	110.9°
C3'	O3'	HO3'	112.5°	106.9°
C2'	C3'	H3'	116.5°	111.1°
C3'	C2'	O2'	107.6°	110.8°
C3'	C2'	C1'	103.7°	102.2°
C3'	C2'	H2'	114.6°	110.9°
O2'	C2'	C1'	110.3°	111.0°
O2'	C2'	H2'	108.5°	110.7°
C2'	O2'	HO2'	107.6°	106.8°
C1'	C2'	H2'	112.0°	111.0°
C2'	C1'	H1'	112.7°	109.9°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
N3	C2	N1	H21	180.0°	179.9°
N3	C2	N1	C7A	2.9°	0.0°
N3	C2	N1	C1'	176.5°	180.0°
C2	N3	C3A	C7A	0.8°	0.0°
C2	N3	C3A	C4	177.6°	179.7°
C3A	N3	C2	N1	1.4°	0.0°
N3	C3A	C7A	N1	2.6°	0.0°
C3A	N3	C2	H21	178.6°	180.0°
N3	C3A	C7A	C4	178.6°	179.7°
N3	C3A	C7A	C7	180.0°	180.0°
N3	C3A	C4	C5	179.5°	179.8°
N3	C3A	C4	H41	0.5°	0.0°
C2	N1	C7A	C1'	179.4°	180.0°
C2	N1	C7A	C3A	3.3°	0.0°
C2	N1	C7A	C7	179.7°	180.0°
C2	N1	C1'	O4'	171.2°	28.4°
C2	N1	C1'	C2'	53.7°	89.8°
C2	N1	C1'	H1'	67.7°	149.3°
C7A	N1	C2	H21	177.1°	180.0°
N1	C7A	C3A	C7	177.4°	180.0°
N1	C7A	C3A	C4	176.0°	179.7°
N1	C7A	C7	C6	175.5°	180.0°
N1	C7A	C7	H71	4.5°	0.0°
C7A	N1	C1'	O4'	9.5°	151.6°
C7A	N1	C1'	C2'	127.0°	90.2°
C7A	N1	C1'	H1'	111.5°	30.7°
C1'	N1	C2	H21	3.5°	0.0°
C1'	N1	C7A	C3A	176.1°	180.0°
C1'	N1	C7A	C7	0.9°	0.0°
N1	C1'	O4'	C4'	116.0°	117.9°
N1	C1'	O4'	C2'	123.0°	119.6°
N1	C1'	O4'	H1'	115.3°	120.8°
N1	C1'	C2'	C3'	91.4°	140.8°
N1	C1'	C2'	O2'	23.5°	22.7°
N1	C1'	C2'	H1'	115.3°	120.8°
N1	C1'	C2'	H2'	144.5°	100.9°
C7A	C3A	C4	C5	1.3°	0.6°
C7A	C3A	C4	H41	178.7°	179.7°
C3A	C7A	C7	C6	1.2°	0.0°
C3A	C7A	C7	H71	178.8°	180.0°
C7	C7A	C3A	C4	1.5°	0.3°
C7A	C7	C6	C5	0.9°	0.0°
C7A	C7	C6	H71	180.0°	179.9°
C7A	C7	C6	H61	179.1°	180.0°
C3A	C4	C5	H41	180.0°	179.8°
C3A	C4	C5	C6	0.9°	0.6°
C3A	C4	C5	C8	179.7°	179.8°
C4	C5	C6	C8	179.4°	179.6°
C4	C5	C6	C7	0.8°	0.3°
C4	C5	C6	H61	179.3°	179.7°
C4	C5	C8	H81	180.0°	90.3°
C4	C5	C8	H82	54.7°	29.7°
C4	C5	C8	H83	54.7°	149.7°
H41	C4	C5	C6	179.1°	179.7°
H41	C4	C5	C8	0.3°	0.0°
C5	C6	C7	H61	180.0°	180.0°
C5	C6	C7	H71	179.1°	179.9°
C6	C5	C8	H81	0.6°	90.0°
C6	C5	C8	H82	124.7°	149.9°
C6	C5	C8	H83	125.9°	30.0°
C8	C5	C6	C7	179.8°	180.0°
C8	C5	C6	H61	0.1°	0.0°
C5	C8	H81	H82	125.2°	120.0°
C5	C8	H81	H83	125.2°	120.0°
C5	C8	H82	H83	114.3°	120.0°
H61	C6	C7	H71	0.8°	0.0°
H81	C8	H82	H83	114.5°	120.0°
O1P	P	O2P	O3P	134.1°	120.0°
O1P	P	O2P	O5'	117.0°	119.9°
O1P	P	O3P	O5'	108.1°	120.0°
O1P	P	O2P	HOP2	180.0°	60.0°
O1P	P	O3P	HOP3	180.0°	180.0°
O1P	P	O5'	C5'	54.3°	60.1°
O2P	P	O3P	O5'	113.5°	120.1°
O2P	P	O3P	HOP3	41.6°	60.0°
O2P	P	O5'	C5'	178.3°	180.0°
O3P	P	O2P	HOP2	45.9°	60.0°
O3P	P	O5'	C5'	59.3°	59.9°
O5'	P	O2P	HOP2	63.0°	180.0°
O5'	P	O3P	HOP3	71.9°	60.1°
P	O5'	C5'	C4'	101.4°	180.0°
P	O5'	C5'	H5'1	133.3°	59.9°
P	O5'	C5'	H5'2	23.9°	60.0°
O5'	C5'	C4'	H5'1	125.3°	120.1°
O5'	C5'	C4'	H5'2	125.3°	119.9°
O5'	C5'	H5'1	H5'2	118.1°	119.9°
O5'	C5'	C4'	O4'	59.2°	61.4°
O5'	C5'	C4'	C3'	177.3°	177.2°
O5'	C5'	C4'	H4'	62.9°	60.7°
C4'	C5'	H5'1	H5'2	118.2°	120.0°
C5'	C4'	O4'	C3'	123.7°	119.1°
C5'	C4'	O4'	H4'	116.3°	122.0°
C5'	C4'	C3'	H4'	116.2°	122.0°
C5'	C4'	O4'	C1'	102.6°	143.5°
C5'	C4'	C3'	O3'	159.6°	86.5°
C5'	C4'	C3'	C2'	82.9°	155.4°
C5'	C4'	C3'	H3'	41.7°	37.5°
H5'1	C5'	C4'	O4'	66.1°	178.5°
H5'1	C5'	C4'	C3'	52.0°	62.7°
H5'1	C5'	C4'	H4'	171.8°	59.4°
H5'2	C5'	C4'	O4'	175.5°	58.6°
H5'2	C5'	C4'	C3'	57.5°	57.3°
H5'2	C5'	C4'	H4'	62.3°	179.4°
O4'	C4'	C3'	H4'	122.3°	118.9°
O4'	C4'	C3'	O3'	78.9°	154.4°
O4'	C4'	C3'	C2'	38.7°	36.3°
O4'	C4'	C3'	H3'	163.2°	81.5°
C4'	O4'	C1'	C2'	7.0°	1.7°
C4'	O4'	C1'	H1'	128.7°	121.3°
C3'	C4'	O4'	C1'	21.1°	24.3°
C4'	C3'	O3'	C2'	108.9°	111.7°
C4'	C3'	O3'	H3'	125.3°	124.1°
C4'	C3'	C2'	H3'	124.0°	117.9°
C4'	C3'	O3'	HO3'	180.0°	180.0°
C4'	C3'	C2'	O2'	160.0°	84.3°
C4'	C3'	C2'	C1'	43.1°	34.0°
C4'	C3'	C2'	H2'	79.3°	152.3°
H4'	C4'	O4'	C1'	141.1°	94.5°
H4'	C4'	C3'	O3'	43.4°	35.5°
H4'	C4'	C3'	C2'	160.9°	82.6°
H4'	C4'	C3'	H3'	74.5°	159.6°
O4'	C1'	C2'	C3'	32.0°	21.2°
O4'	C1'	C2'	O2'	147.0°	96.9°
O4'	C1'	C2'	H1'	121.2°	119.6°
O4'	C1'	C2'	H2'	92.1°	139.5°
O3'	C3'	C2'	H3'	117.8°	124.0°
O3'	C3'	C2'	O2'	41.8°	33.8°
O3'	C3'	C2'	C1'	75.0°	152.1°
O3'	C3'	C2'	H2'	162.6°	89.6°
C2'	C3'	O3'	HO3'	71.1°	68.3°
C3'	C2'	O2'	C1'	112.5°	112.8°
C3'	C2'	O2'	H2'	124.5°	123.5°
C3'	C2'	C1'	H2'	124.1°	118.2°
C3'	C2'	O2'	HO2'	179.9°	61.4°
C3'	C2'	C1'	H1'	153.3°	98.3°
H3'	C3'	O3'	HO3'	54.7°	55.8°
H3'	C3'	C2'	O2'	76.0°	157.8°
H3'	C3'	C2'	C1'	167.1°	83.9°
H3'	C3'	C2'	H2'	44.7°	34.4°
O2'	C2'	C1'	H2'	121.0°	123.6°
O2'	C2'	C1'	H1'	91.8°	143.5°
C1'	C2'	O2'	HO2'	67.6°	174.2°
H2'	C2'	O2'	HO2'	55.5°	62.0°
H2'	C2'	C1'	H1'	29.2°	19.9°

Definition date:	2001-07-09
Last modified:	2020-06-17
Release status:	REL
Processing site:	RCSB
Derived from:	1JHO